RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781083|ref|YP_003065496.1| hypothetical protein
CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)



>d1uaxa_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 211

 Score = 26.8 bits (58), Expect = 0.86
 Identities = 4/16 (25%), Positives = 10/16 (62%)

Query: 28  RKSFADVHEALERYKK 43
           R+++    +  ER++K
Sbjct: 195 RRTWETARKIEERFRK 210


>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit,
           domain 1 {Propionibacterium freudenreichii, subsp.
           shermanii [TaxId: 1744]}
          Length = 557

 Score = 26.2 bits (57), Expect = 1.5
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 32  ADVHEALERYKKVARVVGPHIPNSNVFSSSVR--RTYWSERGDIINAL 77
             V  AL++    A       P+ N+    +   R   +  G++ +AL
Sbjct: 503 EKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATV-GEMSDAL 549


>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
           {Methylobacillus flagellatus [TaxId: 405]}
          Length = 395

 Score = 24.6 bits (53), Expect = 3.9
 Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 2/53 (3%)

Query: 64  RTYWSERGDIINALDQDLQDVESIEVFE-YLKTRLS-DLEAHRRSMSFYFAKY 114
                        L Q L D  S++     L   L+ + E +      Y   Y
Sbjct: 150 GADIVRNIPAFQTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLY 202


>d1ikta_ d.106.1.1 (A:) SCP2-like domain of MFE-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 115

 Score = 24.5 bits (53), Expect = 4.9
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 85  ESIEVFEYLKTRLSDLEAH-----RRSMSFYFAKYPKKVGPSVIDV 125
           +S  VFE +  RL D+             ++  K         ID+
Sbjct: 2   QSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKGGNIGAKWTIDL 47


>d1u1ha2 c.1.22.2 (A:396-760)
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase MetE {Thale cress (Arabidopsis
           thaliana) [TaxId: 3702]}
          Length = 365

 Score = 23.9 bits (51), Expect = 6.2
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 5/49 (10%)

Query: 85  ESIEVFEYLKTRLSDLEAHRRSMS-----FYFAKYPKKVGPSVIDVVYP 128
           + I     +   +  +E  R             KY   +GP V D+  P
Sbjct: 260 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSP 308


>d1pz4a_ d.106.1.1 (A:) Sterol carrier protein 2 (SCP2) {Yellow
           fever mosquito (Aedes aegypti) [TaxId: 7159]}
          Length = 113

 Score = 24.2 bits (52), Expect = 6.6
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 86  SIEVFEYLKTRLSDLEAHRRSMS----FYFAKYPKKVGPSVIDV 125
           S EVF  +  RL  ++   R +     F   +  K V   V+D+
Sbjct: 8   SDEVFAKIAKRLESIDPANRQVEHVYKFRITQGGKVVKNWVMDL 51


>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 167

 Score = 24.0 bits (52), Expect = 6.7
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 100 LEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKEDKV 138
           LEA R + + Y                +P  H+++E+K 
Sbjct: 61  LEAARVAANRYVQNSGAAANYKFRIRKFPF-HVIRENKA 98


>d1io2a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon
           Thermococcus kodakaraensis [TaxId: 311400]}
          Length = 213

 Score = 24.0 bits (51), Expect = 7.6
 Identities = 3/16 (18%), Positives = 8/16 (50%)

Query: 28  RKSFADVHEALERYKK 43
           RK +  + +  E+ + 
Sbjct: 195 RKGWKTLKKIAEKVES 210


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId:
          562]}
          Length = 493

 Score = 23.8 bits (51), Expect = 7.7
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)

Query: 26 VQRKSFADVHE----ALERYKKVARVVG 49
          V R+    ++       + YKK ARVVG
Sbjct: 15 VHRRVLYAMNVLGNDWNKAYKKSARVVG 42


>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
           faecalis (Streptococcus faecalis) [TaxId: 1351]}
          Length = 353

 Score = 23.8 bits (51), Expect = 7.9
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 16/67 (23%)

Query: 44  VARVVG--PHIPNSNVFSSSVRRTYWS-----ERGDIINALDQDLQDVESIEVFEYLKTR 96
           +  VVG   +    +V         W+          +      L  +ES+ + + +K  
Sbjct: 26  ITGVVGTLLNKLPGDV---------WTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAG 76

Query: 97  LSDLEAH 103
               + +
Sbjct: 77  TDQRDHY 83


>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
          protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 310

 Score = 23.7 bits (51), Expect = 8.7
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 14 VSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGP 50
          + I VF      +  KSF+    AL ++ +V + +  
Sbjct: 62 LKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAE 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 581,774
Number of extensions: 24936
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 16
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)