Query gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 59
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 04:37:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781084.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00352 POU Found in Pit-Oc 26.9 24 0.00061 17.6 0.6 17 14-30 25-41 (75)
2 pfam00157 Pou Pou domain - N-t 22.4 33 0.00084 16.9 0.7 17 14-30 25-41 (75)
3 TIGR02889 spore_YpeB germinati 19.3 47 0.0012 16.2 0.9 22 15-36 33-54 (465)
4 pfam08289 Flu_M1_C Influenza M 17.8 34 0.00087 16.8 -0.1 28 10-37 19-46 (97)
5 smart00759 Flu_M1_C Influenza 13.1 71 0.0018 15.3 0.5 27 11-37 20-46 (95)
6 KOG3802 consensus 11.7 99 0.0025 14.5 0.9 17 14-30 224-240 (398)
7 COG5164 SPT5 Transcription elo 8.5 1.1E+02 0.0029 14.2 0.2 32 23-56 301-332 (607)
8 PRK00380 panC pantoate--beta-a 8.3 1.4E+02 0.0036 13.8 0.7 29 2-30 56-101 (283)
9 PRK09710 lar restriction allev 8.3 1.3E+02 0.0033 13.9 0.5 10 26-35 38-47 (49)
10 pfam07611 DUF1574 Protein of u 7.9 1.2E+02 0.0031 14.0 0.2 14 2-15 125-138 (345)
No 1
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=26.93 E-value=24 Score=17.61 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=15.4
Q ss_pred EEEECHHHHHHHHHCCH
Q ss_conf 56300668899872661
Q gi|254781084|r 14 LVQADVDRAFSEMYGNS 30 (59)
Q Consensus 14 lvqadvdrafsemygns 30 (59)
+.|+||..|++..||..
T Consensus 25 ~TQ~dVG~aL~~l~g~~ 41 (75)
T smart00352 25 FTQADVGLALGALYGPD 41 (75)
T ss_pred CCHHHHHHHHHHHCCCC
T ss_conf 75999999999861864
No 2
>pfam00157 Pou Pou domain - N-terminal to homeobox domain.
Probab=22.39 E-value=33 Score=16.90 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=15.5
Q ss_pred EEEECHHHHHHHHHCCH
Q ss_conf 56300668899872661
Q gi|254781084|r 14 LVQADVDRAFSEMYGNS 30 (59)
Q Consensus 14 lvqadvdrafsemygns 30 (59)
+-|+||..|++..||+.
T Consensus 25 ~TQ~dVg~al~~l~G~~ 41 (75)
T pfam00157 25 YTQADVGLALGALYGPV 41 (75)
T ss_pred CCHHHHHHHHHHHCCCC
T ss_conf 75999999999870865
No 3
>TIGR02889 spore_YpeB germination protein YpeB; InterPro: IPR014239 Proteins in this entry include the sporulation protein YpeB from Bacillus subtilis. YpeB and the putative spore-cortex-lytic enzyme SleB are required for normal germination. These proteins appear to be restricted to endospore-forming species in the Firmicutes lineage of bacteria, and have been found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary for SleB to function..
Probab=19.28 E-value=47 Score=16.16 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=18.5
Q ss_pred EEECHHHHHHHHHCCHHHHHHH
Q ss_conf 6300668899872661454431
Q gi|254781084|r 15 VQADVDRAFSEMYGNSEQAAEK 36 (59)
Q Consensus 15 vqadvdrafsemygnseqaaek 36 (59)
.|+.-+|+|-||+++.||-...
T Consensus 33 L~~~Y~R~F~~L~~~v~~i~~~ 54 (465)
T TIGR02889 33 LQAQYQRAFYELIDHVEQIEAE 54 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8522216799987558878764
No 4
>pfam08289 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=17.81 E-value=34 Score=16.83 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=20.1
Q ss_pred CCCEEEEECHHHHHHHHHCCHHHHHHHH
Q ss_conf 7522563006688998726614544310
Q gi|254781084|r 10 NSDMLVQADVDRAFSEMYGNSEQAAEKN 37 (59)
Q Consensus 10 nsdmlvqadvdrafsemygnseqaaekn 37 (59)
...|..-.....|...|-|.||||+|--
T Consensus 19 E~rMVlAstTAKaMeqmagsseqaaeam 46 (97)
T pfam08289 19 EMQMVLAMNTAKAMEGMAGSSEKAADAM 46 (97)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 7789998757999998525547689999
No 5
>smart00759 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=13.07 E-value=71 Score=15.26 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=19.6
Q ss_pred CCEEEEECHHHHHHHHHCCHHHHHHHH
Q ss_conf 522563006688998726614544310
Q gi|254781084|r 11 SDMLVQADVDRAFSEMYGNSEQAAEKN 37 (59)
Q Consensus 11 sdmlvqadvdrafsemygnseqaaekn 37 (59)
-.|..--....+...|-|.|||++|--
T Consensus 20 ~~MV~A~~tAKaMe~magsseqaaeam 46 (95)
T smart00759 20 MQMVLAMNTAKAMEGMAGSSEKAADAM 46 (95)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 788873027999988525437679999
No 6
>KOG3802 consensus
Probab=11.73 E-value=99 Score=14.52 Aligned_cols=17 Identities=47% Similarity=0.743 Sum_probs=15.3
Q ss_pred EEEECHHHHHHHHHCCH
Q ss_conf 56300668899872661
Q gi|254781084|r 14 LVQADVDRAFSEMYGNS 30 (59)
Q Consensus 14 lvqadvdrafsemygns 30 (59)
+.|+||.-|....|||.
T Consensus 224 fTQaDVGlALG~lyGn~ 240 (398)
T KOG3802 224 FTQADVGLALGALYGNV 240 (398)
T ss_pred CCHHHHHHHHHHHHCCC
T ss_conf 44267888987650764
No 7
>COG5164 SPT5 Transcription elongation factor [Transcription]
Probab=8.45 E-value=1.1e+02 Score=14.24 Aligned_cols=32 Identities=38% Similarity=0.503 Sum_probs=18.7
Q ss_pred HHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf 9987266145443100002233333332157433
Q gi|254781084|r 23 FSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDS 56 (59)
Q Consensus 23 fsemygnseqaaeknssseskskadlnkmnapds 56 (59)
|+..-+|-+-.|.|.-.- .-|+||.|||+|-+
T Consensus 301 fv~~~~nv~~VAtkd~~~--s~k~dl~kmnp~v~ 332 (607)
T COG5164 301 FVKIEGNVCIVATKDFTE--SLKVDLDKMNPPVT 332 (607)
T ss_pred EEEECCCEEEEEECCCHH--HHCCCHHHCCCHHH
T ss_conf 997058536897155423--21056735590320
No 8
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=8.31 E-value=1.4e+02 Score=13.77 Aligned_cols=29 Identities=45% Similarity=0.651 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCEE-------------EEECHHHHH----HHHHCCH
Q ss_conf 8875448875225-------------630066889----9872661
Q gi|254781084|r 2 VSPPQFNSNSDML-------------VQADVDRAF----SEMYGNS 30 (59)
Q Consensus 2 vsppqfnsnsdml-------------vqadvdraf----semygns 30 (59)
|-|-|||.+.|.- -.+.||-.| .|||.+.
T Consensus 56 VNP~QF~~~eD~~~YPr~~e~D~~~l~~~gvD~vF~P~~~eiYp~~ 101 (283)
T PRK00380 56 VNPLQFGPNEDLDRYPRTLEADLAKLEAAGVDLVFAPSVEEMYPEG 101 (283)
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHCCCC
T ss_conf 0601059875401289878999999998699899788789817899
No 9
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=8.26 E-value=1.3e+02 Score=13.93 Aligned_cols=10 Identities=50% Similarity=0.607 Sum_probs=6.7
Q ss_pred HHCCHHHHHH
Q ss_conf 7266145443
Q gi|254781084|r 26 MYGNSEQAAE 35 (59)
Q Consensus 26 mygnseqaae 35 (59)
-||.|||+|-
T Consensus 38 ~~~~se~~a~ 47 (49)
T PRK09710 38 GYGGSEKEAL 47 (49)
T ss_pred CCCCHHHHHH
T ss_conf 1474077663
No 10
>pfam07611 DUF1574 Protein of unknown function (DUF1574). A family of hypothetical proteins in Leptospira interrogans.
Probab=7.92 E-value=1.2e+02 Score=14.05 Aligned_cols=14 Identities=57% Similarity=0.707 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCEEE
Q ss_conf 88754488752256
Q gi|254781084|r 2 VSPPQFNSNSDMLV 15 (59)
Q Consensus 2 vsppqfnsnsdmlv 15 (59)
+||-|||++|+...
T Consensus 125 ~spe~Fn~~s~~~~ 138 (345)
T pfam07611 125 SSPEQFNSNSTTFK 138 (345)
T ss_pred CCHHHCCCCCCCCC
T ss_conf 48777076445004
Done!