Query gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 59
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 21:33:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781084.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1e3o_C Octamer-binding transc 23.4 27 0.0008 17.0 0.7 18 14-31 25-42 (91)
2 >3d1n_I POU domain, class 6, t 21.7 14 0.00042 18.4 -1.0 17 14-30 22-38 (94)
3 >2fok_A R.FOKI, FOKI restricti 21.5 58 0.0017 15.4 2.1 30 6-35 121-150 (159)
4 >1au7_A Protein PIT-1, GHF-1; 16.8 42 0.0013 16.0 0.5 17 14-30 21-37 (82)
5 >1mty_D Methane monooxygenase 8.8 63 0.0019 15.2 -0.6 11 14-24 4-14 (93)
6 >1q1q_A SULT2B1A, sulfotransfe 7.6 1E+02 0.003 14.1 0.0 10 1-10 1-10 (42)
7 >2wmm_A Chromosome partition p 5.4 2.4E+02 0.0072 12.2 1.0 18 20-37 29-46 (107)
8 >2inc_A Toluene, O-xylene mono 5.2 1.3E+02 0.0037 13.7 -0.6 11 14-24 20-30 (107)
9 >2vri_A Non-structural protein 4.6 2.9E+02 0.0086 11.9 2.0 29 9-37 31-59 (163)
10 >3ez9_A Para; DNA binding, win 4.5 1.3E+02 0.0038 13.6 -0.9 26 13-38 14-39 (65)
No 1
>>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} (C:1-91)
Probab=23.43 E-value=27 Score=17.02 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.7
Q ss_pred EEEECHHHHHHHHHCCHH
Q ss_conf 563006688998726614
Q gi|254781084|r 14 LVQADVDRAFSEMYGNSE 31 (59)
Q Consensus 14 lvqadvdrafsemygnse 31 (59)
+.|+||..|++..||+.-
T Consensus 25 ~TQ~dVG~al~~l~g~~f 42 (91)
T 1e3o_C 25 FTQGDVGLAMGKLYGNDF 42 (91)
T ss_dssp CCHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHCCCCC
T ss_conf 759899999995346752
No 2
>>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} (I:1-94)
Probab=21.71 E-value=14 Score=18.40 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.3
Q ss_pred EEEECHHHHHHHHHCCH
Q ss_conf 56300668899872661
Q gi|254781084|r 14 LVQADVDRAFSEMYGNS 30 (59)
Q Consensus 14 lvqadvdrafsemygns 30 (59)
+.|+||..|++-.||+.
T Consensus 22 ~TQ~dVG~ALg~l~G~~ 38 (94)
T 3d1n_I 22 LTQTQVGQAXTATEGPA 38 (94)
T ss_dssp CCHHHHHHHHSCSSSCC
T ss_pred CCHHHHHHHHHCCCCCC
T ss_conf 76968999997337763
No 3
>>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} (A:1-159)
Probab=21.47 E-value=58 Score=15.37 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=25.7
Q ss_pred CCCCCCCEEEEECHHHHHHHHHCCHHHHHH
Q ss_conf 448875225630066889987266145443
Q gi|254781084|r 6 QFNSNSDMLVQADVDRAFSEMYGNSEQAAE 35 (59)
Q Consensus 6 qfnsnsdmlvqadvdrafsemygnseqaae 35 (59)
.|+-+.|+..-.++.++|++.+.++++..+
T Consensus 121 ~y~r~~DtfsITe~G~~~~~a~d~~~~E~~ 150 (159)
T 2fok_A 121 EYINKSDSFVITDVGLAYSKSADGSAIEKE 150 (159)
T ss_dssp EEETTTTEEEECHHHHHHHHSCTTCHHHHH
T ss_pred EEECCCCEEEEEHHHHHHHHHCCCHHHHHH
T ss_conf 870378758873777999875223567999
No 4
>>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA); HET: DNA; 2.30A {Rattus norvegicus} (A:1-82)
Probab=16.83 E-value=42 Score=16.04 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=15.2
Q ss_pred EEEECHHHHHHHHHCCH
Q ss_conf 56300668899872661
Q gi|254781084|r 14 LVQADVDRAFSEMYGNS 30 (59)
Q Consensus 14 lvqadvdrafsemygns 30 (59)
+.|+||..|++..||+.
T Consensus 21 ~TQ~dVG~al~~l~g~~ 37 (82)
T 1au7_A 21 YTQTNVGEALAAVHGSE 37 (82)
T ss_dssp CCHHHHHHHHHHTTSSC
T ss_pred CCCCCHHHHHHHCCCCC
T ss_conf 88646777766415886
No 5
>>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:249-341)
Probab=8.84 E-value=63 Score=15.19 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=8.1
Q ss_pred EEEECHHHHHH
Q ss_conf 56300668899
Q gi|254781084|r 14 LVQADVDRAFS 24 (59)
Q Consensus 14 lvqadvdrafs 24 (59)
++|.++|++|=
T Consensus 4 ~lQ~~id~~FW 14 (93)
T 1mty_D 4 YLNTDLNNAFW 14 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 6
>>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens} (A:1-42)
Probab=7.60 E-value=1e+02 Score=14.15 Aligned_cols=10 Identities=60% Similarity=1.089 Sum_probs=7.0
Q ss_pred CCCCCCCCCC
Q ss_conf 9887544887
Q gi|254781084|r 1 MVSPPQFNSN 10 (59)
Q Consensus 1 mvsppqfnsn 10 (59)
|++||.+.|.
T Consensus 1 m~~pp~~~Sq 10 (42)
T 1q1q_A 1 MASPPPFHSQ 10 (42)
T ss_dssp ----------
T ss_pred CCCCCCCCCC
T ss_conf 9989888878
No 7
>>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli} (A:28-134)
Probab=5.43 E-value=2.4e+02 Score=12.24 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=12.9
Q ss_pred HHHHHHHHCCHHHHHHHH
Q ss_conf 688998726614544310
Q gi|254781084|r 20 DRAFSEMYGNSEQAAEKN 37 (59)
Q Consensus 20 drafsemygnseqaaekn 37 (59)
---||.|||-+..|---.
T Consensus 29 APYfSAlYGpaRhAIVV~ 46 (107)
T 2wmm_A 29 APYFSALYGPSRHAIVVP 46 (107)
T ss_dssp HHHHHHHTGGGGGCEEES
T ss_pred HHHHHHHHCCCCEEEEEC
T ss_conf 577998746300025617
No 8
>>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} (A:233-339)
Probab=5.17 E-value=1.3e+02 Score=13.68 Aligned_cols=11 Identities=36% Similarity=0.093 Sum_probs=8.6
Q ss_pred EEEECHHHHHH
Q ss_conf 56300668899
Q gi|254781084|r 14 LVQADVDRAFS 24 (59)
Q Consensus 14 lvqadvdrafs 24 (59)
++|.++|++|=
T Consensus 20 ~~Q~~id~~FW 30 (107)
T 2inc_A 20 EAQQMVDVAIW 30 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 9
>>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} (A:12-174)
Probab=4.63 E-value=2.9e+02 Score=11.87 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCCEEEEECHHHHHHHHHCCHHHHHHHH
Q ss_conf 87522563006688998726614544310
Q gi|254781084|r 9 SNSDMLVQADVDRAFSEMYGNSEQAAEKN 37 (59)
Q Consensus 9 snsdmlvqadvdrafsemygnseqaaekn 37 (59)
.|+++.....++.|+.+.+|..-|...++
T Consensus 31 ~n~~~~~~~gia~ai~~~~G~~~~~e~~~ 59 (163)
T 2vri_A 31 ANENLLHGGGVARAIDILTEGQLQSLSKD 59 (163)
T ss_dssp ECTTCCCCSHHHHHHHHHTTTHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 87121678848799999739129999999
No 10
>>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A (A:41-105)
Probab=4.51 E-value=1.3e+02 Score=13.62 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=18.0
Q ss_pred EEEEECHHHHHHHHHCCHHHHHHHHC
Q ss_conf 25630066889987266145443100
Q gi|254781084|r 13 MLVQADVDRAFSEMYGNSEQAAEKNS 38 (59)
Q Consensus 13 mlvqadvdrafsemygnseqaaekns 38 (59)
-|-.+.||.|.+||-.+.-|-..|..
T Consensus 14 ~Ltr~~Vd~av~EME~~GY~F~Kk~~ 39 (65)
T 3ez9_A 14 KLSRRIVDQAIKEMEEDGYQFNKKQV 39 (65)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 85577799998766544677885457
Done!