Query         gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 59
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:15:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781084.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1e3oc2 a.35.1.1 (C:1-75) Oct-  29.6     7.2 0.00053   17.9   0.7   18   14-31     25-42  (75)
  2 d1au7a2 a.35.1.1 (A:5-76) Pit-  20.9      12 0.00088   16.8   0.5   17   14-30     21-37  (72)
  3 d1v8fa_ c.26.1.4 (A:) Pantothe   7.3      66  0.0048   13.1   0.9   32    1-32     51-99  (276)
  4 d1ihoa_ c.26.1.4 (A:) Pantothe   6.4      52  0.0038   13.7  -0.0   32    1-32     56-104 (282)
  5 d2a84a1 c.26.1.4 (A:3-288) Pan   5.2      96   0.007   12.3   0.8   14    1-14     65-78  (286)
  6 d1ak7a_ d.109.1.2 (A:) Destrin   4.2   1E+02  0.0076   12.1   0.4   29    1-29      2-30  (174)
  7 d2jdih1 a.2.10.1 (H:102-145) E   3.3 1.3E+02  0.0092   11.7   0.2   19   17-35      9-27  (44)
  8 d2fz5a1 c.23.5.1 (A:1-137) Fla   3.2 1.3E+02  0.0092   11.7   0.1   11   26-36      9-19  (137)
  9 d5nula_ c.23.5.1 (A:) Flavodox   2.6 1.6E+02   0.012   11.1   0.1   11   26-36      8-18  (138)
 10 d1e5da1 c.23.5.1 (A:251-402) R   2.2 1.9E+02   0.014   10.8   0.1   11   26-36     12-22  (152)

No 1  
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.60  E-value=7.2  Score=17.92  Aligned_cols=18  Identities=39%  Similarity=0.637  Sum_probs=15.6

Q ss_pred             EEEECHHHHHHHHHCCHH
Q ss_conf             563006688998726614
Q gi|254781084|r   14 LVQADVDRAFSEMYGNSE   31 (59)
Q Consensus        14 lvqadvdrafsemygnse   31 (59)
                      +.|+||..|++..||+.-
T Consensus        25 ~TQ~dVG~al~~l~g~~~   42 (75)
T d1e3oc2          25 FTQGDVGLAMGKLYGNDF   42 (75)
T ss_dssp             CCHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHHCCCCH
T ss_conf             558999999998717502


No 2  
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.88  E-value=12  Score=16.82  Aligned_cols=17  Identities=24%  Similarity=0.432  Sum_probs=14.9

Q ss_pred             EEEECHHHHHHHHHCCH
Q ss_conf             56300668899872661
Q gi|254781084|r   14 LVQADVDRAFSEMYGNS   30 (59)
Q Consensus        14 lvqadvdrafsemygns   30 (59)
                      +.|+||..|++..||..
T Consensus        21 ~TQ~dVG~al~~l~g~~   37 (72)
T d1au7a2          21 YTQTNVGEALAAVHGSE   37 (72)
T ss_dssp             CCHHHHHHHHHHTTSSC
T ss_pred             CCHHHHHHHHHHHCCCC
T ss_conf             62999999999861865


No 3  
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=7.31  E-value=66  Score=13.13  Aligned_cols=32  Identities=41%  Similarity=0.591  Sum_probs=19.5

Q ss_pred             CCCCCCCCCCCCE-------------EEEECHHHHH----HHHHCCHHH
Q ss_conf             9887544887522-------------5630066889----987266145
Q gi|254781084|r    1 MVSPPQFNSNSDM-------------LVQADVDRAF----SEMYGNSEQ   32 (59)
Q Consensus         1 mvsppqfnsnsdm-------------lvqadvdraf----semygnseq   32 (59)
                      .|-|-|||.+.|.             |-.+.||-.|    .|||.+...
T Consensus        51 FVNP~QF~~~eD~~~YPr~~~~D~~~l~~~~vd~vf~P~~~e~yp~~~~   99 (276)
T d1v8fa_          51 FVNPLQFGPGEDYHRYPRDLERDRALLQEAGVDLLFAPGVEEMYPEGFA   99 (276)
T ss_dssp             CCCGGGCCTTSSTTTSCCCHHHHHHHHHHTTCSEEECCCHHHHSCTTCC
T ss_pred             EECCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf             8667667871012205642563499998579979983353345665553


No 4  
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=6.36  E-value=52  Score=13.65  Aligned_cols=32  Identities=38%  Similarity=0.667  Sum_probs=21.0

Q ss_pred             CCCCCCCCCCCCE-------------EEEECHHHHH----HHHHCCHHH
Q ss_conf             9887544887522-------------5630066889----987266145
Q gi|254781084|r    1 MVSPPQFNSNSDM-------------LVQADVDRAF----SEMYGNSEQ   32 (59)
Q Consensus         1 mvsppqfnsnsdm-------------lvqadvdraf----semygnseq   32 (59)
                      .|-|-|||.+.|.             |-.+.||-.|    .|||.+..+
T Consensus        56 FVNP~QF~~~eD~~~YPr~l~~D~~~l~~~~vd~vf~P~~~e~yp~~~~  104 (282)
T d1ihoa_          56 FVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTE  104 (282)
T ss_dssp             CCCGGGCSSHHHHHHSCCCHHHHHHHHHHTTCSEEECCCHHHHCTTCST
T ss_pred             EECCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf             7367657642112126763888899997549958996374112234455


No 5  
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.25  E-value=96  Score=12.31  Aligned_cols=14  Identities=36%  Similarity=0.634  Sum_probs=10.5

Q ss_pred             CCCCCCCCCCCCEE
Q ss_conf             98875448875225
Q gi|254781084|r    1 MVSPPQFNSNSDML   14 (59)
Q Consensus         1 mvsppqfnsnsdml   14 (59)
                      .|-|-|||.+.|.-
T Consensus        65 FVNP~QF~~~eD~~   78 (286)
T d2a84a1          65 FVNPMQFGAGGDLD   78 (286)
T ss_dssp             CCCCCCTTC-----
T ss_pred             EECCCCCCCCCCCC
T ss_conf             64665567556576


No 6  
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]}
Probab=4.23  E-value=1e+02  Score=12.11  Aligned_cols=29  Identities=34%  Similarity=0.422  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCCCEEEEECHHHHHHHHHCC
Q ss_conf             98875448875225630066889987266
Q gi|254781084|r    1 MVSPPQFNSNSDMLVQADVDRAFSEMYGN   29 (59)
Q Consensus         1 mvsppqfnsnsdmlvqadvdrafsemygn   29 (59)
                      |+.|-+-++.|.+.|..++-.+|.+|--+
T Consensus         2 ~~~~~~~ss~SGI~v~de~~~~f~elK~~   30 (174)
T d1ak7a_           2 MITPSSGNSASGVQVADEVCRIFYDMKVR   30 (174)
T ss_dssp             CCCCCSSSTTCCCCCCSSHHHHTTSSSST
T ss_pred             CCCCCCCCCCCCCEECHHHHHHHHHHHHC
T ss_conf             22566676779947599999999998614


No 7  
>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.34  E-value=1.3e+02  Score=11.70  Aligned_cols=19  Identities=32%  Similarity=0.622  Sum_probs=14.4

Q ss_pred             ECHHHHHHHHHCCHHHHHH
Q ss_conf             0066889987266145443
Q gi|254781084|r   17 ADVDRAFSEMYGNSEQAAE   35 (59)
Q Consensus        17 advdrafsemygnseqaae   35 (59)
                      +....|-|||-|-|..|+.
T Consensus         9 ~nlekaqsel~~asdeaar   27 (44)
T d2jdih1           9 ANLEKAQSELLGAADEATR   27 (44)
T ss_dssp             HHHHHHHHHSSSCCCSSSS
T ss_pred             HHHHHHHHHHHCCCHHHHH
T ss_conf             5189999987511308766


No 8  
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}
Probab=3.18  E-value=1.3e+02  Score=11.71  Aligned_cols=11  Identities=36%  Similarity=0.416  Sum_probs=5.5

Q ss_pred             HHCCHHHHHHH
Q ss_conf             72661454431
Q gi|254781084|r   26 MYGNSEQAAEK   36 (59)
Q Consensus        26 mygnseqaaek   36 (59)
                      +|||+|+.|+.
T Consensus         9 ~tGnTe~~A~~   19 (137)
T d2fz5a1           9 GTGNTEAMANE   19 (137)
T ss_dssp             SSSHHHHHHHH
T ss_pred             CCHHHHHHHHH
T ss_conf             87079999999


No 9  
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}
Probab=2.57  E-value=1.6e+02  Score=11.14  Aligned_cols=11  Identities=45%  Similarity=0.450  Sum_probs=4.7

Q ss_pred             HHCCHHHHHHH
Q ss_conf             72661454431
Q gi|254781084|r   26 MYGNSEQAAEK   36 (59)
Q Consensus        26 mygnseqaaek   36 (59)
                      |+||+++.|+.
T Consensus         8 ~tGnT~~vA~~   18 (138)
T d5nula_           8 GTGNTEKMAEL   18 (138)
T ss_dssp             SSSHHHHHHHH
T ss_pred             CCHHHHHHHHH
T ss_conf             67179999999


No 10 
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=2.25  E-value=1.9e+02  Score=10.79  Aligned_cols=11  Identities=27%  Similarity=0.452  Sum_probs=5.9

Q ss_pred             HHCCHHHHHHH
Q ss_conf             72661454431
Q gi|254781084|r   26 MYGNSEQAAEK   36 (59)
Q Consensus        26 mygnseqaaek   36 (59)
                      ||||.+..|+.
T Consensus        12 ~tGnTe~~A~~   22 (152)
T d1e5da1          12 MWHSTEKMARV   22 (152)
T ss_dssp             SSSHHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             88089999999


Done!