Query gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 59 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:15:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781084.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1e3oc2 a.35.1.1 (C:1-75) Oct- 29.6 7.2 0.00053 17.9 0.7 18 14-31 25-42 (75) 2 d1au7a2 a.35.1.1 (A:5-76) Pit- 20.9 12 0.00088 16.8 0.5 17 14-30 21-37 (72) 3 d1v8fa_ c.26.1.4 (A:) Pantothe 7.3 66 0.0048 13.1 0.9 32 1-32 51-99 (276) 4 d1ihoa_ c.26.1.4 (A:) Pantothe 6.4 52 0.0038 13.7 -0.0 32 1-32 56-104 (282) 5 d2a84a1 c.26.1.4 (A:3-288) Pan 5.2 96 0.007 12.3 0.8 14 1-14 65-78 (286) 6 d1ak7a_ d.109.1.2 (A:) Destrin 4.2 1E+02 0.0076 12.1 0.4 29 1-29 2-30 (174) 7 d2jdih1 a.2.10.1 (H:102-145) E 3.3 1.3E+02 0.0092 11.7 0.2 19 17-35 9-27 (44) 8 d2fz5a1 c.23.5.1 (A:1-137) Fla 3.2 1.3E+02 0.0092 11.7 0.1 11 26-36 9-19 (137) 9 d5nula_ c.23.5.1 (A:) Flavodox 2.6 1.6E+02 0.012 11.1 0.1 11 26-36 8-18 (138) 10 d1e5da1 c.23.5.1 (A:251-402) R 2.2 1.9E+02 0.014 10.8 0.1 11 26-36 12-22 (152) No 1 >d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=29.60 E-value=7.2 Score=17.92 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.6 Q ss_pred EEEECHHHHHHHHHCCHH Q ss_conf 563006688998726614 Q gi|254781084|r 14 LVQADVDRAFSEMYGNSE 31 (59) Q Consensus 14 lvqadvdrafsemygnse 31 (59) +.|+||..|++..||+.- T Consensus 25 ~TQ~dVG~al~~l~g~~~ 42 (75) T d1e3oc2 25 FTQGDVGLAMGKLYGNDF 42 (75) T ss_dssp CCHHHHHHHHHHHHSCCC T ss_pred CCHHHHHHHHHHHCCCCH T ss_conf 558999999998717502 No 2 >d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=20.88 E-value=12 Score=16.82 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.9 Q ss_pred EEEECHHHHHHHHHCCH Q ss_conf 56300668899872661 Q gi|254781084|r 14 LVQADVDRAFSEMYGNS 30 (59) Q Consensus 14 lvqadvdrafsemygns 30 (59) +.|+||..|++..||.. T Consensus 21 ~TQ~dVG~al~~l~g~~ 37 (72) T d1au7a2 21 YTQTNVGEALAAVHGSE 37 (72) T ss_dssp CCHHHHHHHHHHTTSSC T ss_pred CCHHHHHHHHHHHCCCC T ss_conf 62999999999861865 No 3 >d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]} Probab=7.31 E-value=66 Score=13.13 Aligned_cols=32 Identities=41% Similarity=0.591 Sum_probs=19.5 Q ss_pred CCCCCCCCCCCCE-------------EEEECHHHHH----HHHHCCHHH Q ss_conf 9887544887522-------------5630066889----987266145 Q gi|254781084|r 1 MVSPPQFNSNSDM-------------LVQADVDRAF----SEMYGNSEQ 32 (59) Q Consensus 1 mvsppqfnsnsdm-------------lvqadvdraf----semygnseq 32 (59) .|-|-|||.+.|. |-.+.||-.| .|||.+... T Consensus 51 FVNP~QF~~~eD~~~YPr~~~~D~~~l~~~~vd~vf~P~~~e~yp~~~~ 99 (276) T d1v8fa_ 51 FVNPLQFGPGEDYHRYPRDLERDRALLQEAGVDLLFAPGVEEMYPEGFA 99 (276) T ss_dssp CCCGGGCCTTSSTTTSCCCHHHHHHHHHHTTCSEEECCCHHHHSCTTCC T ss_pred EECCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC T ss_conf 8667667871012205642563499998579979983353345665553 No 4 >d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]} Probab=6.36 E-value=52 Score=13.65 Aligned_cols=32 Identities=38% Similarity=0.667 Sum_probs=21.0 Q ss_pred CCCCCCCCCCCCE-------------EEEECHHHHH----HHHHCCHHH Q ss_conf 9887544887522-------------5630066889----987266145 Q gi|254781084|r 1 MVSPPQFNSNSDM-------------LVQADVDRAF----SEMYGNSEQ 32 (59) Q Consensus 1 mvsppqfnsnsdm-------------lvqadvdraf----semygnseq 32 (59) .|-|-|||.+.|. |-.+.||-.| .|||.+..+ T Consensus 56 FVNP~QF~~~eD~~~YPr~l~~D~~~l~~~~vd~vf~P~~~e~yp~~~~ 104 (282) T d1ihoa_ 56 FVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTE 104 (282) T ss_dssp CCCGGGCSSHHHHHHSCCCHHHHHHHHHHTTCSEEECCCHHHHCTTCST T ss_pred EECCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC T ss_conf 7367657642112126763888899997549958996374112234455 No 5 >d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]} Probab=5.25 E-value=96 Score=12.31 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=10.5 Q ss_pred CCCCCCCCCCCCEE Q ss_conf 98875448875225 Q gi|254781084|r 1 MVSPPQFNSNSDML 14 (59) Q Consensus 1 mvsppqfnsnsdml 14 (59) .|-|-|||.+.|.- T Consensus 65 FVNP~QF~~~eD~~ 78 (286) T d2a84a1 65 FVNPMQFGAGGDLD 78 (286) T ss_dssp CCCCCCTTC----- T ss_pred EECCCCCCCCCCCC T ss_conf 64665567556576 No 6 >d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Probab=4.23 E-value=1e+02 Score=12.11 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=24.5 Q ss_pred CCCCCCCCCCCCEEEEECHHHHHHHHHCC Q ss_conf 98875448875225630066889987266 Q gi|254781084|r 1 MVSPPQFNSNSDMLVQADVDRAFSEMYGN 29 (59) Q Consensus 1 mvsppqfnsnsdmlvqadvdrafsemygn 29 (59) |+.|-+-++.|.+.|..++-.+|.+|--+ T Consensus 2 ~~~~~~~ss~SGI~v~de~~~~f~elK~~ 30 (174) T d1ak7a_ 2 MITPSSGNSASGVQVADEVCRIFYDMKVR 30 (174) T ss_dssp CCCCCSSSTTCCCCCCSSHHHHTTSSSST T ss_pred CCCCCCCCCCCCCEECHHHHHHHHHHHHC T ss_conf 22566676779947599999999998614 No 7 >d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Probab=3.34 E-value=1.3e+02 Score=11.70 Aligned_cols=19 Identities=32% Similarity=0.622 Sum_probs=14.4 Q ss_pred ECHHHHHHHHHCCHHHHHH Q ss_conf 0066889987266145443 Q gi|254781084|r 17 ADVDRAFSEMYGNSEQAAE 35 (59) Q Consensus 17 advdrafsemygnseqaae 35 (59) +....|-|||-|-|..|+. T Consensus 9 ~nlekaqsel~~asdeaar 27 (44) T d2jdih1 9 ANLEKAQSELLGAADEATR 27 (44) T ss_dssp HHHHHHHHHSSSCCCSSSS T ss_pred HHHHHHHHHHHCCCHHHHH T ss_conf 5189999987511308766 No 8 >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Probab=3.18 E-value=1.3e+02 Score=11.71 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=5.5 Q ss_pred HHCCHHHHHHH Q ss_conf 72661454431 Q gi|254781084|r 26 MYGNSEQAAEK 36 (59) Q Consensus 26 mygnseqaaek 36 (59) +|||+|+.|+. T Consensus 9 ~tGnTe~~A~~ 19 (137) T d2fz5a1 9 GTGNTEAMANE 19 (137) T ss_dssp SSSHHHHHHHH T ss_pred CCHHHHHHHHH T ss_conf 87079999999 No 9 >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} Probab=2.57 E-value=1.6e+02 Score=11.14 Aligned_cols=11 Identities=45% Similarity=0.450 Sum_probs=4.7 Q ss_pred HHCCHHHHHHH Q ss_conf 72661454431 Q gi|254781084|r 26 MYGNSEQAAEK 36 (59) Q Consensus 26 mygnseqaaek 36 (59) |+||+++.|+. T Consensus 8 ~tGnT~~vA~~ 18 (138) T d5nula_ 8 GTGNTEKMAEL 18 (138) T ss_dssp SSSHHHHHHHH T ss_pred CCHHHHHHHHH T ss_conf 67179999999 No 10 >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Probab=2.25 E-value=1.9e+02 Score=10.79 Aligned_cols=11 Identities=27% Similarity=0.452 Sum_probs=5.9 Q ss_pred HHCCHHHHHHH Q ss_conf 72661454431 Q gi|254781084|r 26 MYGNSEQAAEK 36 (59) Q Consensus 26 mygnseqaaek 36 (59) ||||.+..|+. T Consensus 12 ~tGnTe~~A~~ 22 (152) T d1e5da1 12 MWHSTEKMARV 22 (152) T ss_dssp SSSHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 88089999999 Done!