BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62] (59 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62] gi|254040761|gb|ACT57557.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62] Length = 59 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 59/59 (100%), Positives = 59/59 (100%) Query: 1 MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59 MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS Sbjct: 1 MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59 >gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 597 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Query: 1 MVSPPQFNSNSDMLVQAD-VDRAFSEMYGNSE 31 ++S P+ N+D+L +AD +DRA+ YGN E Sbjct: 405 LISDPELAPNADLLTRADGIDRAYVNQYGNPE 436 Searching..................................................done Results from round 2 CONVERGED! >gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62] gi|254040761|gb|ACT57557.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62] Length = 59 Score = 77.7 bits (189), Expect = 5e-13, Method: Composition-based stats. Identities = 59/59 (100%), Positives = 59/59 (100%) Query: 1 MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59 MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS Sbjct: 1 MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.299 0.113 0.291 Lambda K H 0.267 0.0353 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 818,717,294 Number of Sequences: 14124377 Number of extensions: 17253090 Number of successful extensions: 47917 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 47915 Number of HSP's gapped (non-prelim): 3 length of query: 59 length of database: 4,842,793,630 effective HSP length: 32 effective length of query: 27 effective length of database: 4,390,813,566 effective search space: 118551966282 effective search space used: 118551966282 T: 11 A: 40 X1: 16 ( 6.9 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.7 bits) S2: 75 (33.7 bits)