RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781084|ref|YP_003065497.1| hypothetical protein
CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.043
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 7/29 (24%)

Query: 31 EQAAEKNSSSESKSKADLNKMNAPDSLPS 59
          E+ A K      K +A L K+ A DS P+
Sbjct: 18 EKQALK------KLQASL-KLYADDSAPA 39


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.299    0.113    0.291 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 381,179
Number of extensions: 9614
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 3
Length of query: 59
Length of database: 5,693,230
Length adjustment: 30
Effective length of query: 29
Effective length of database: 4,965,910
Effective search space: 144011390
Effective search space used: 144011390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 50 (23.6 bits)