RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62] (59 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.043 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 7/29 (24%) Query: 31 EQAAEKNSSSESKSKADLNKMNAPDSLPS 59 E+ A K K +A L K+ A DS P+ Sbjct: 18 EKQALK------KLQASL-KLYADDSAPA 39 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.299 0.113 0.291 Gapped Lambda K H 0.267 0.0488 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 381,179 Number of extensions: 9614 Number of successful extensions: 17 Number of sequences better than 10.0: 1 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 3 Length of query: 59 Length of database: 5,693,230 Length adjustment: 30 Effective length of query: 29 Effective length of database: 4,965,910 Effective search space: 144011390 Effective search space used: 144011390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.7 bits) S2: 50 (23.6 bits)