BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781084|ref|YP_003065497.1| hypothetical protein
CLIBASIA_04930 [Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 59

 Score =  116 bits (291), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59
          MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS
Sbjct: 1  MVSPPQFNSNSDMLVQADVDRAFSEMYGNSEQAAEKNSSSESKSKADLNKMNAPDSLPS 59


>gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 160

 Score = 29.6 bits (65), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 2/26 (7%)

Query: 31  EQAAEKNSSSESKSKADLNKMNAPDS 56
           ++  EKNSSSE K   DLNK+NAP S
Sbjct: 136 DKVDEKNSSSELK--VDLNKLNAPGS 159


>gi|254780543|ref|YP_003064956.1| NADH dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 131

 Score = 21.9 bits (45), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 27 YGNSEQAAEKNSSSESKSKADLNKMNAPDSLP 58
          +GN+   + KN +  S+     N    P S+P
Sbjct: 35 FGNTYYESRKNINGSSRRWVIYNGYTDPSSIP 66


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.299    0.113    0.291 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,311
Number of Sequences: 1233
Number of extensions: 682
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 59
length of database: 328,796
effective HSP length: 31
effective length of query: 28
effective length of database: 290,573
effective search space:  8136044
effective search space used:  8136044
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.4 bits)
S2: 31 (16.5 bits)