HHsearch alignment for GI: 254781085 and conserved domain: CHL00019
>CHL00019 atpF ATP synthase CF0 B subunit.
Probab=99.96 E-value=3.9e-27 Score=175.99 Aligned_cols=158 Identities=13% Similarity=0.154 Sum_probs=151.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97989999999999999999996228899999999999999999999999999999999999999999999999999999
Q gi|254781085|r 2 HFDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKH 81 (173)
Q Consensus 2 ~~d~tfw~~i~f~il~~il~~~~~~~~i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~~ 81 (173)
T Consensus 23 N~niletnlINl~Ivi~iL~~f-~~~~L~~~L~~R~~~I~~~I~eAE~~~~eA~~~L~e~~~~L~~A~~eA~~I~~~A~~ 101 (184)
T CHL00019 23 NTDILETNLINLSVVLGVLIYF-GKGVLSDLLDNRKQRILNTIRNSEERREEAIEKLEKARARLRQAEIEADEIRVNGYS 101 (184)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7409999999999999999999-599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999999999999999943399999999999999999999
Q gi|254781085|r 82 RAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQSCH 160 (173)
Q Consensus 82 ~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~~~l~~~~~~~~I~~~i~~l~~~~ 160 (173)
T Consensus 102 ~ae~~k~~i~~~a~~e~erl~~~A~~~I~~E~~kA~~elr~ev~~lAl~~a~k~L~~~Ld~~~q~~LId~~I~~LG~~~ 180 (184)
T CHL00019 102 EIEREKLNLINSTYEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTIDANIGLLGAMK 180 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999999999999999999999999999999999999866499999999999999871622