HHsearch alignment for GI: 254781085 and conserved domain: CHL00019
>CHL00019 atpF ATP synthase CF0 B subunit.
Probab=97.71 E-value=0.003 Score=37.41 Aligned_cols=124 Identities=12% Similarity=0.086 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999622889999999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r 10 FMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEE 89 (173)
Q Consensus 10 ~i~f~il~~il~~~~~~~~i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~ 89 (173)
T Consensus 27 letnlINl~Ivi~i-L~~f~~~~L~~~L~~R~~~---I~~~I~eAE~~~~eA~~~L~----e~~~~L~~A~~eA~~I~~~ 98 (184)
T CHL00019 27 LETNLINLSVVLGV-LIYFGKGVLSDLLDNRKQR---ILNTIRNSEERREEAIEKLE----KARARLRQAEIEADEIRVN 98 (184)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999-9999599999999999999---99999999999999999999----9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999999999999999999999994339
Q gi|254781085|r 90 GCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIISQKMN 141 (173)
Q Consensus 90 ~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~~~l~ 141 (173)
T Consensus 99 A~~~ae~~k~~i~~~a~~e~erl~~~A~~~I~~E~~kA~~elr~ev~~lAl~ 150 (184)
T CHL00019 99 GYSEIEREKLNLINSTYEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQ 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999999