HHsearch alignment for GI: 254781085 and conserved domain: COG1317
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=91.37 E-value=0.92 Score=23.02 Aligned_cols=61 Identities=10% Similarity=0.262 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999943399--999999999999999999
Q gi|254781085|r 96 QISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIISQKMND--DVNSSIFEKTISSIQSCH 160 (173)
Q Consensus 96 ~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~~~l~~--~~~~~~I~~~i~~l~~~~ 160 (173)
T Consensus 95 e~~~~li~~~~~~~~----~~~~~~e~qLv~lvl~ia~~Vi~~~~~~~~~~ll~~v~e~L~~~~~~~ 157 (234)
T COG1317 95 ERLAKLIAEFQAELE----ALKEVVEKQLVQLVLEIARKVIGKELELDPEALLAAVREALEEVPLFA 157 (234)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999----999999999999999999999856531288999999999999711666