HHsearch alignment for GI: 254781085 and conserved domain: PRK06569
>PRK06569 F0F1 ATP synthase subunit B'; Validated.
Probab=98.04 E-value=0.00081 Score=40.74 Aligned_cols=139 Identities=11% Similarity=0.132 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 979899999999-9999999999622889999999999999999999999999999999999999999999999999999
Q gi|254781085|r 2 HFDETFLVFMSL-IIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAK 80 (173)
Q Consensus 2 ~~d~tfw~~i~f-~il~~il~~~~~~~~i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~ 80 (173)
T Consensus 3 Qld~~~~~sQifWL~itF~~ly~~~sk~~---lPri~~~le~R~~~I~~dl~~A~~~k~eae~----~~~~ye~~l~~Ak 75 (157)
T PRK06569 3 QFDIATYYSQIFWLIVTFGLLYIFVYKFI---TPKAEEIFNNRQTNIQDNITQADTLTLEVEK----LNKYYNEEIDKTN 75 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_conf 99822408999999999999999999998---6048779998999999889999999999999----9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 9999999999999999999999999999999999999999-------999999999999999994339999999
Q gi|254781085|r 81 HRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLL-------YAKIADFSVEIVREIISQKMNDDVNSS 147 (173)
Q Consensus 81 ~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l-------~~~~~~la~~~~~kil~~~l~~~~~~~ 147 (173)
T Consensus 76 ~eA~~i~~ea~~~l~~e~~~k~~~le~~l~~~i~~aekeI~~~k~~a~~~i~~ia~eia~~iI~kl~G~k~n~s 149 (157)
T PRK06569 76 TEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNIIEKITGTKADMN 149 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999999999999999999999999999999999999999987876999999999999999868887788