HHsearch alignment for GI: 254781085 and conserved domain: pfam06635
>pfam06635 NolV Nodulation protein NolV. This family consists of several nodulation protein NolV sequences from different Rhizobium species. The function of this family is unclear.
Probab=92.54 E-value=0.67 Score=23.82 Aligned_cols=101 Identities=11% Similarity=0.057 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999943
Q gi|254781085|r 60 QYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIISQK 139 (173)
Q Consensus 60 ~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~~~ 139 (173)
T Consensus 31 da~~~ieAA~~~A~~vr~~A~~ayE~~r~~Gye~G~~~g~~E~A~li~qt~ae~~~y~a~lE~~l~~lVle~vRkiLg~f 110 (207)
T pfam06635 31 DAAKACAAAERHLQHVRGWARAAYERELAQGHAEGAKAGAEEMAALIAQATAELAQRKAVLEQELPQLVFEILRDLLGAF 110 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 69999999999999999999999999999889999999999999999999999999999999999999999999998604
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 399999999999999999999
Q gi|254781085|r 140 MNDDVNSSIFEKTISSIQSCH 160 (173)
Q Consensus 140 l~~~~~~~~I~~~i~~l~~~~ 160 (173)
T Consensus 111 D~~Ell~r~vR~AL~~~~~~k 131 (207)
T pfam06635 111 DPGELLVMAVRHAIEQQYKGA 131 (207)
T ss_pred CHHHHHHHHHHHHHHHHHCCC
T ss_conf 948899999999999873387