HHsearch alignment of GI: 254781085 and MMDB domain: 2cly_A_
>2cly_A (A:) ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus}
Probab=99.85 E-value=3.4e-20 Score=135.36 Aligned_cols=155 Identities=10% Similarity=0.066 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79899999999999999999962288999999999999999999999999999999999999999999999999999999
Q gi|254781085|r 3 FDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHR 82 (173)
Q Consensus 3 ~d~tfw~~i~f~il~~il~~~~~~~~i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~~~ 82 (173)
+|..||++++|++|+++++++ +|+||.++||+|.+.|.+++++|+..+.++.+.+.+|++++..+..++..|+..++++
T Consensus 53 ~n~e~~~~i~F~i~~~l~~k~-~~~~i~~~ld~R~~~I~~~l~~a~~~~~ea~~~~~e~~~~l~~~~~~~~~I~~~ake~ 131 (214)
T 2cly_A 53 ITPETFSAISTIGFLVYIVKK-YGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNN 131 (214)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 880799999999999999999-8999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999994339999999999999999999999
Q gi|254781085|r 83 AKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQSCHQM 162 (173)
Q Consensus 83 a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~~~l~~~~~~~~I~~~i~~l~~~~k~ 162 (173)
+....+....+....+......+...+......+++.+++++++.+ .+.+...++++.++++|+++|.+|+.....
T Consensus 132 a~~~~E~~~~e~~~~~~~~~k~~ld~~~~~e~~~r~~~q~~~v~~v----~~~v~k~i~~~~~~~li~~~I~~L~~la~k 207 (214)
T 2cly_A 132 IAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWV----EKRVVQSISAQQEKETIAKCIADLKLLSKK 207 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999----999998758888999999999999989987