Query gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 173
No_of_seqs 115 out of 1862
Neff 8.2
Searched_HMMs 33803
Date Wed Jun 1 21:26:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781085.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2cly_A ATP synthase B chain, 99.9 3.4E-20 1E-24 135.4 14.8 155 3-162 53-207 (214)
2 >1l2p_A ATP synthase B chain; 97.9 0.00014 4.1E-09 44.8 9.7 59 63-121 2-60 (61)
3 >1b9u_A Protein (ATP synthase) 97.0 0.001 3E-08 39.8 4.5 32 1-33 1-33 (34)
4 >2khk_A ATP synthase subunit B 94.0 0.0052 1.5E-07 35.7 -1.6 50 31-80 2-51 (53)
5 >2cly_A ATP synthase B chain, 94.0 0.33 9.9E-06 25.2 14.8 93 23-122 68-160 (214)
6 >2k88_A Vacuolar proton pump s 74.9 4.7 0.00014 18.5 7.9 45 64-108 10-54 (60)
7 >2kk7_A V-type ATP synthase su 71.3 5.8 0.00017 18.0 6.0 32 63-94 14-45 (52)
8 >2rdd_B UPF0092 membrane prote 53.4 9.8 0.00029 16.7 2.5 26 11-36 6-31 (37)
9 >1u2m_A Histone-like protein H 44.1 18 0.00053 15.2 2.9 53 82-134 60-112 (143)
10 >2f95_B Sensory rhodopsin II t 29.4 27 0.00081 14.1 1.6 22 25-46 83-104 (163)
11 >2f93_B Sensory rhodopsin II t 25.4 36 0.0011 13.4 1.6 21 25-45 85-105 (122)
No 1
>>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} (A:)
Probab=99.85 E-value=3.4e-20 Score=135.36 Aligned_cols=155 Identities=10% Similarity=0.066 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79899999999999999999962288999999999999999999999999999999999999999999999999999999
Q gi|254781085|r 3 FDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHR 82 (173)
Q Consensus 3 ~d~tfw~~i~f~il~~il~~~~~~~~i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~~~ 82 (173)
+|..||++++|++|+++++++ +|+||.++||+|.+.|.+++++|+..+.++.+.+.+|++++..+..++..|+..++++
T Consensus 53 ~n~e~~~~i~F~i~~~l~~k~-~~~~i~~~ld~R~~~I~~~l~~a~~~~~ea~~~~~e~~~~l~~~~~~~~~I~~~ake~ 131 (214)
T 2cly_A 53 ITPETFSAISTIGFLVYIVKK-YGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNN 131 (214)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 880799999999999999999-8999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999994339999999999999999999999
Q gi|254781085|r 83 AKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQSCHQM 162 (173)
Q Consensus 83 a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~kil~~~l~~~~~~~~I~~~i~~l~~~~k~ 162 (173)
+....+....+....+......+...+......+++.+++++++.+ .+.+...++++.++++|+++|.+|+.....
T Consensus 132 a~~~~E~~~~e~~~~~~~~~k~~ld~~~~~e~~~r~~~q~~~v~~v----~~~v~k~i~~~~~~~li~~~I~~L~~la~k 207 (214)
T 2cly_A 132 IAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWV----EKRVVQSISAQQEKETIAKCIADLKLLSKK 207 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999----999998758888999999999999989987
No 2
>>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} (A:)
Probab=97.90 E-value=0.00014 Score=44.79 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r 63 EKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLY 121 (173)
Q Consensus 63 ~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~ 121 (173)
+.|.+++.++..|+.+|+..+..+++++...+..+.++++..++.+|+.+...++.+||
T Consensus 2 e~L~eAk~eAa~Ii~~A~kra~qIveeak~~A~~Ea~rIi~~A~aeIe~Er~~a~~eLR 60 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77799999999999999988999999999999999999999899999999999999750
No 3
>>1b9u_A Protein (ATP synthase); membrane protein; HET: GMA; NMR {Synthetic} (A:)
Probab=96.97 E-value=0.001 Score=39.79 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=25.0
Q ss_pred CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9979899999-99999999999996228899999
Q gi|254781085|r 1 MHFDETFLVF-MSLIIFLVIVVYLRIPSILLSFL 33 (173)
Q Consensus 1 m~~d~tfw~~-i~f~il~~il~~~~~~~~i~~~l 33 (173)
||+|.|++.. +.|++|++ ++.+++|+|+.+.+
T Consensus 1 MniNaTl~gQ~i~F~~fvw-F~mKfVWPPl~~ai 33 (34)
T 1b9u_A 1 MNLNATILGQAIAFVLFVL-FCMKYVWPPLMAAI 33 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 9611899999999999999-99998623888860
No 4
>>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12} (A:)
Probab=94.03 E-value=0.0052 Score=35.68 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999
Q gi|254781085|r 31 SFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAK 80 (173)
Q Consensus 31 ~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~ 80 (173)
+.|++|+.+|.+.|..|+..+.+.+.........|.+++.++..|+.+|.
T Consensus 2 ~aieeRqkkIAdGLaaAerak~eLelA~~~a~~~L~eAK~~AaeiI~qA~ 51 (53)
T 2khk_A 2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQAN 51 (53)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37889998987679999977899999999999999999999999999755
No 5
>>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} (A:)
Probab=94.02 E-value=0.33 Score=25.20 Aligned_cols=93 Identities=6% Similarity=-0.079 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96228899999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r 23 LRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYL 102 (173)
Q Consensus 23 ~~~~~~i~~~l~~R~~~I~~~l~~A~~~~~~a~~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~ 102 (173)
+++++.+...+.+ .+.+..+......+++.....+..+. ..+....+..+..++..+.+.....+....+...
T Consensus 68 ~l~~k~~~~~i~~---~ld~R~~~I~~~l~~a~~~~~ea~~~----~~e~~~~l~~~~~~~~~I~~~ake~a~~~~E~~~ 140 (214)
T 2cly_A 68 VYIVKKYGASVGE---FADKLNEQKIAQLEEVKQASIKQIQD----AIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTY 140 (214)
T ss_dssp -----------CH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998999999---99998999999999999999999999----9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254781085|r 103 KDLEQKIHYMKLEAKRLLYA 122 (173)
Q Consensus 103 ~~a~~~I~~~~~~a~~~l~~ 122 (173)
.++..++..........+..
T Consensus 141 ~e~~~~~~~~~k~~ld~~~~ 160 (214)
T 2cly_A 141 RERLHRVYREVKNRLDYHIS 160 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
No 6
>>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} (A:)
Probab=74.92 E-value=4.7 Score=18.52 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999
Q gi|254781085|r 64 KHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQK 108 (173)
Q Consensus 64 ~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~ 108 (173)
.|..+..++..|+.+|+..-......+..+|..+++....+-+.+
T Consensus 10 qLL~AEk~A~~iV~eARk~k~~RLKqAKeEA~~EIe~yr~q~E~e 54 (60)
T 2k88_A 10 TLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKE 54 (60)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999989999999999999999889899999999999999999999
No 7
>>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} (A:)
Probab=71.30 E-value=5.8 Score=18.01 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999
Q gi|254781085|r 63 EKHSKVEEETREIILAAKHRAKILAEEGCQNI 94 (173)
Q Consensus 63 ~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a 94 (173)
+.+.+++.++..|+.+|..+...+.+.+..++
T Consensus 14 KIleDA~~~A~kI~sEAekEk~~il~KAkeEA 45 (52)
T 2kk7_A 14 KILDDAKAEANKIISEAEAEKAKILEKAKEEA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998886899999899988999999989999
No 8
>>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} (B:)
Probab=53.44 E-value=9.8 Score=16.68 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999996228899999999
Q gi|254781085|r 11 MSLIIFLVIVVYLRIPSILLSFLDAH 36 (173)
Q Consensus 11 i~f~il~~il~~~~~~~~i~~~l~~R 36 (173)
+.++++++.+.||++.+|=.+--.++
T Consensus 6 ~~~~v~i~~ifYFllIRPQ~Kr~Ke~ 31 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 99999999999999937217889999
No 9
>>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} (A:)
Probab=44.07 E-value=18 Score=15.19 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999
Q gi|254781085|r 82 RAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVRE 134 (173)
Q Consensus 82 ~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~k 134 (173)
......+.....-..++..........+..........+...+....-.++++
T Consensus 60 ~~~~~~~~el~~k~~elq~~~~~~~~~l~~~~~~~~~~l~~~i~~~i~~ia~~ 112 (143)
T 1u2m_A 60 SDRTKLEKDVXAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999899999999999999999999999999999878999999999999998
No 10
>>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle state; HET: BOG RET; 2.20A {Natronomonas pharaonis} (B:)
Probab=29.38 E-value=27 Score=14.09 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2288999999999999999999
Q gi|254781085|r 25 IPSILLSFLDAHADKIRDDIFE 46 (173)
Q Consensus 25 ~~~~i~~~l~~R~~~I~~~l~~ 46 (173)
+-+|+....+.-..--.++++.
T Consensus 83 i~~Pl~~l~~~~~~i~~gd~~~ 104 (163)
T 2f95_B 83 TAASLSTLAAKASRMGDGDLDV 104 (163)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999887412233
No 11
>>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle state, membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} (B:)
Probab=25.36 E-value=36 Score=13.42 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 228899999999999999999
Q gi|254781085|r 25 IPSILLSFLDAHADKIRDDIF 45 (173)
Q Consensus 25 ~~~~i~~~l~~R~~~I~~~l~ 45 (173)
+-+||....+.=..--+++++
T Consensus 85 i~~PI~~l~~~~~~i~~G~~~ 105 (122)
T 2f93_B 85 TAASLSTLAAKASRMGDGDLD 105 (122)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 458999999999998679988
Done!