HHSEARCH alignment of GI: 254781085 and SCOP domain: d1l2pa_

Alignment

Probab=97.97  E-value=3.4e-05  Score=46.08  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r   63 EKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYA  122 (173)
Q Consensus        63 ~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~  122 (173)
                      ..|.+++.++..|+.+|+..+..+++++...+..+.++++..++.+|+.+...++.+||.
T Consensus         2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLRk   61 (61)
T d1l2pa_           2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             777999999999999999889999999999999999999998999999999999997509

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]