Query gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 173
No_of_seqs 115 out of 1862
Neff 8.2
Searched_HMMs 13730
Date Wed Jun 1 11:33:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781085.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l2pa_ f.23.21.1 (A:) F1F0 AT 98.0 3.4E-05 2.5E-09 46.1 9.7 60 63-122 2-61 (61)
2 d1l2pa_ f.23.21.1 (A:) F1F0 AT 94.7 0.098 7.2E-06 26.0 10.0 56 54-109 4-59 (61)
3 d1u00a1 a.8.4.1 (A:504-615) Ch 31.1 12 0.00085 14.0 10.2 24 61-84 22-45 (112)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 27.8 13 0.00098 13.6 2.7 17 3-19 29-45 (100)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 24.6 15 0.0011 13.3 2.7 16 3-18 35-50 (107)
6 d1v54d_ f.23.1.1 (D:) Mitochon 23.7 14 0.00099 13.6 1.2 25 11-35 86-110 (144)
7 d1u2ma_ f.48.1.1 (A:) Periplas 23.5 16 0.0012 13.2 3.7 44 91-134 69-112 (143)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 18.7 20 0.0015 12.6 3.8 22 2-23 2-23 (37)
9 d1jb0x_ f.23.20.1 (X:) Subunit 15.5 25 0.0018 12.1 3.2 20 5-24 6-25 (29)
10 d1xvha1 a.8.1.2 (A:3-72) Ebh p 14.4 26 0.0019 11.9 3.6 43 121-163 28-70 (70)
No 1
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=97.97 E-value=3.4e-05 Score=46.08 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999999999999999999
Q gi|254781085|r 63 EKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYA 122 (173)
Q Consensus 63 ~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~ 122 (173)
..|.+++.++..|+.+|+..+..+++++...+..+.++++..++.+|+.+...++.+||.
T Consensus 2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLRk 61 (61)
T d1l2pa_ 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 777999999999999999889999999999999999999998999999999999997509
No 2
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=94.66 E-value=0.098 Score=26.01 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999
Q gi|254781085|r 54 SENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKI 109 (173)
Q Consensus 54 a~~~~~~~~~~l~~a~~ea~~i~~~a~~~a~~~~e~~~~~a~~~~~~~~~~a~~~I 109 (173)
..+...+....+.+++..+..|+.+++..|..+.+.++..++.+++.....+...+
T Consensus 4 L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eL 59 (61)
T d1l2pa_ 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999998899999999999999999999989999999999999975
No 3
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=31.13 E-value=12 Score=13.97 Aligned_cols=24 Identities=4% Similarity=-0.015 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254781085|r 61 YKEKHSKVEEETREIILAAKHRAK 84 (173)
Q Consensus 61 ~~~~l~~a~~ea~~i~~~a~~~a~ 84 (173)
..+.+.+++.++..++........
T Consensus 22 ~~R~~ie~~n~ae~~i~~~e~~L~ 45 (112)
T d1u00a1 22 KARMLAEQKVEAARVLESLHGALA 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=27.80 E-value=13 Score=13.63 Aligned_cols=17 Identities=12% Similarity=0.338 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 79899999999999999
Q gi|254781085|r 3 FDETFLVFMSLIIFLVI 19 (173)
Q Consensus 3 ~d~tfw~~i~f~il~~i 19 (173)
+|..+|+.+.+++++..
T Consensus 29 ~~~v~~i~~~I~~~V~~ 45 (100)
T d3dtub2 29 DGFILVIIAAITIFVTL 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=24.56 E-value=15 Score=13.27 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 7989999999999999
Q gi|254781085|r 3 FDETFLVFMSLIIFLV 18 (173)
Q Consensus 3 ~d~tfw~~i~f~il~~ 18 (173)
+|..+|+++..+++++
T Consensus 35 h~~v~~i~~~I~~~V~ 50 (107)
T d3ehbb2 35 DHFVLYIITAVTIFVC 50 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9888999999999999
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.68 E-value=14 Score=13.59 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999622889999999
Q gi|254781085|r 11 MSLIIFLVIVVYLRIPSILLSFLDA 35 (173)
Q Consensus 11 i~f~il~~il~~~~~~~~i~~~l~~ 35 (173)
++|.++++++.+.++++|+-..|++
T Consensus 86 i~~s~~i~~~~r~~v~p~~P~T~~~ 110 (144)
T d1v54d_ 86 IGFTALLLIWEKHYVYGPIPHTFEE 110 (144)
T ss_dssp HHHHHHHHHHHHHHTCCCCCGGGSH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 9999999999999707999988899
No 7
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia coli [TaxId: 562]}
Probab=23.55 E-value=16 Score=13.16 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999
Q gi|254781085|r 91 CQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEIVRE 134 (173)
Q Consensus 91 ~~~a~~~~~~~~~~a~~~I~~~~~~a~~~l~~~~~~la~~~~~k 134 (173)
......++......+...+......+...+...+......++.+
T Consensus 69 ~~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~~i~~ia~~ 112 (143)
T d1u2ma_ 69 VMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=18.73 E-value=20 Score=12.56 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9798999999999999999999
Q gi|254781085|r 2 HFDETFLVFMSLIIFLVIVVYL 23 (173)
Q Consensus 2 ~~d~tfw~~i~f~il~~il~~~ 23 (173)
.+|.+-.++-.|.+||..|++.
T Consensus 2 y~D~Aql~ly~Fw~FFagLi~Y 23 (37)
T d1eysh2 2 YIDAAQITIWAFWLFFFGLIIY 23 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 1009999999999999999999
No 9
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=15.48 E-value=25 Score=12.09 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999996
Q gi|254781085|r 5 ETFLVFMSLIIFLVIVVYLR 24 (173)
Q Consensus 5 ~tfw~~i~f~il~~il~~~~ 24 (173)
-|||-++...|-|++-.|+|
T Consensus 6 rt~wa~lllainflvaayyf 25 (29)
T d1jb0x_ 6 RTFWAVLLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999998
No 10
>d1xvha1 a.8.1.2 (A:3-72) Ebh protein {Staphylococcus aureus [TaxId: 1280]}
Probab=14.37 E-value=26 Score=11.92 Aligned_cols=43 Identities=7% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999943399999999999999999999997
Q gi|254781085|r 121 YAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQSCHQMD 163 (173)
Q Consensus 121 ~~~~~~la~~~~~kil~~~l~~~~~~~~I~~~i~~l~~~~k~~ 163 (173)
+..+-+-|+..++.+|.+.-++.....-|+..+..+..++..+
T Consensus 28 kq~aYd~Av~~A~~Iin~~~~p~~~~~~I~~a~~~v~~ak~aL 70 (70)
T d1xvha1 28 KRNAYNQAVSAAETILNKQTGPNTAKTAVEQALNNVNNAKHAL 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8999999999999998079999889999999999999998729
Done!