RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
(173 letters)
>gnl|CDD|169691 PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated.
Length = 159
Score = 107 bits (268), Expect = 2e-24
Identities = 48/156 (30%), Positives = 95/156 (60%)
Query: 3 FDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYK 62
D TF F+ L++FL +VVYL++P ++ LDA AD+I++++ EARRLRE+++ +L +Y+
Sbjct: 1 MDATFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQ 60
Query: 63 EKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYA 122
K + E+E +I+ AA+ A+ L E + E+ A K EQKI + +A + +
Sbjct: 61 RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRS 120
Query: 123 KIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQS 158
D ++ +++++K++ S +F+ ++ +++
Sbjct: 121 SAVDLAIAAAEKLLAEKVDAKAASELFKDALAQVKT 156
>gnl|CDD|184062 PRK13455, PRK13455, F0F1 ATP synthase subunit B; Provisional.
Length = 184
Score = 81.0 bits (200), Expect = 2e-16
Identities = 42/143 (29%), Positives = 81/143 (56%), Gaps = 1/143 (0%)
Query: 7 FLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHS 66
F+V ++ ++F+ I+VY ++P ++ LD A+ IR ++ EAR LRE+++ +L Y+ K
Sbjct: 30 FVVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQR 89
Query: 67 KVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIAD 126
+V+E+ I+ AAK A+ AE+ ++E A L E +I + A + + +
Sbjct: 90 EVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVS 149
Query: 127 FSVEIVREIISQKMN-DDVNSSI 148
+V ++I+++M D N+ I
Sbjct: 150 VAVAAAADVIAKQMTAADANALI 172
>gnl|CDD|184697 PRK14475, PRK14475, F0F1 ATP synthase subunit B; Provisional.
Length = 167
Score = 61.5 bits (149), Expect = 1e-10
Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 7 FLVFMSLIIFLVIVVYLRI-PSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
F V L+IF I++ L++ P L LDA+A KI+ ++ EA+RLRE+++ +L K +
Sbjct: 12 FWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAER 71
Query: 66 SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIA 125
+ E + ++ AAK A+ + E + +E+ + E+KI + +A + A
Sbjct: 72 EEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAV 131
Query: 126 DFSVEIVREIISQKM 140
D + + +++ ++
Sbjct: 132 DLAAQAAETVLAARL 146
>gnl|CDD|139585 PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional.
Length = 173
Score = 45.8 bits (108), Expect = 7e-06
Identities = 36/155 (23%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 8 LVFMSLIIFLVIVVYLRIPS--ILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
LV +L+ FLV+V+ L+ + ++L LD A +++DI +A LR ++E +L Y+ +
Sbjct: 18 LVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARL 77
Query: 66 SKVEEETREIILAAKHRA----KILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLY 121
+ ++E I+ AK A L EE ++ +K++E K +A L
Sbjct: 78 NSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIE----LAKGKALSQLQ 133
Query: 122 AKIADFSVEIVREIISQKMNDDVNSSIFEKTISSI 156
+I + ++ I +++ +++ + + E ++ +
Sbjct: 134 NQIVEMTITIASKVLEKQLKKEDYKAFIETELAKL 168
>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.
Length = 156
Score = 39.8 bits (94), Expect = 4e-04
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 1 MHFDETFLVFMSLIIFLVIVVYLR---IPSILLSFLDAHADKIRDDIFEARRLREKSENI 57
M+ + T + LI FL++V ++ P I+ L+ KI D + A R +++ E
Sbjct: 1 MNLNGTLIG--QLIAFLILVWFIMKFVWPPIM-KALEERQKKIADGLAAAERAKKELELA 57
Query: 58 LMQYKEKHSKVEEETREIILAAKHRA-KILAE---EGCQNIEQISALYLKDLEQKIHYMK 113
+Y+ + ++ E EII AK RA +I+ E E +I A ++EQ+
Sbjct: 58 QAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERK--- 114
Query: 114 LEAKRLLYAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSI 156
A+ L ++AD +V +I+ ++++ S + +K I+ +
Sbjct: 115 -RAREELRKQVADLAVAGAEKILGRELDAAAQSDLIDKLIAEL 156
>gnl|CDD|172947 PRK14472, PRK14472, F0F1 ATP synthase subunit B; Provisional.
Length = 175
Score = 38.6 bits (90), Expect = 8e-04
Identities = 33/153 (21%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 8 LVFMSLIIFLVIVVYLRIPSI--LLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
L+F + + F+++++ L+ + +LS L+ I+ I A ++++E IL + +E
Sbjct: 20 LIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELL 79
Query: 66 SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIA 125
+K + E +II K A+ L E + + + +++I K A +L ++A
Sbjct: 80 AKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVA 139
Query: 126 DFSVEIVREIISQKMNDDVNSSIFEKTISSIQS 158
D +V+ +II ++ D + + I + +
Sbjct: 140 DLAVKGAEKIIRTSLDADKQKKVVDSMIQDLST 172
>gnl|CDD|168615 PRK06568, PRK06568, F0F1 ATP synthase subunit B; Validated.
Length = 154
Score = 35.3 bits (81), Expect = 0.008
Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Query: 1 MHF-DETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILM 59
M+F DE+F + +S +IF V ++Y +L+ LDA ++++ + +A +L+E + +
Sbjct: 1 MNFLDESFWLAVSFVIF-VYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFE 59
Query: 60 QYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRL 119
Q + K+E ++I + K + +E + IE+ D Q I K A +
Sbjct: 60 QTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKE 119
Query: 120 LYAKIADFSVEIVRE 134
L + D +++V E
Sbjct: 120 LQDEFCDEVIKLVSE 134
>gnl|CDD|169692 PRK09174, PRK09174, F0F1 ATP synthase subunit B'; Validated.
Length = 204
Score = 34.0 bits (78), Expect = 0.019
Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 6 TFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
TF +F +F+ V+ RI I+ + D+I D+ +A RL+++++ + Y+++
Sbjct: 62 TFGLFY---LFMSRVILPRIGGII----ETRRDRIAQDLDQAARLKQEADAAVAAYEQEL 114
Query: 66 SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIA 125
++ + I AA+ AK AE IE LK+ E +I +K +A + +
Sbjct: 115 AQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAE 174
Query: 126 DFSVEIVREIISQKMND-DVNSSI 148
+ + IV ++I + V +++
Sbjct: 175 ETAAAIVEQLIGGTADKASVAAAV 198
>gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional.
Length = 164
Score = 34.1 bits (78), Expect = 0.019
Identities = 32/155 (20%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 8 LVFMSLIIFLVIVVYLR--IPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65
L+ LI FL+++ LR + +L+ L+ +I + + +A ++RE+ N Y+ +
Sbjct: 10 LLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAEL 69
Query: 66 SKVEEETREIILAAKHRAKILAEE----GCQNIEQISALYLKDLEQKIHYMKLEAKRLLY 121
+K +E +I+ A+ RA+ E + E+I EQ+ M E K
Sbjct: 70 AKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELK---- 125
Query: 122 AKIADFSVEIVREIISQKMNDDVNSSIFEKTISSI 156
++IAD ++ ++ + ++ ++++++
Sbjct: 126 SQIADLVTLTASRVLGAELQARGHDALIAESLAAL 160
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. CC
and in principle may run in either direction. This model
represents the F0 subunit B of this apparent second ATP
synthase.
Length = 246
Score = 32.3 bits (74), Expect = 0.069
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 1 MHFDETFLVFMSLIIFLVIVVYLR--IPSILLSFLDAHADKIRDDIFEARRLREKSENIL 58
M D F V LI FL++V L+ + +L +DA KI ++ +A + ++E
Sbjct: 1 MLID-WFTVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQER 59
Query: 59 MQYKEKHS---------------KVEEETREIILAAKHRAKILAEEGCQNIEQISALYLK 103
+Y+EK+ + + E + ++ A+ A + E+ + + + A
Sbjct: 60 REYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSD 119
Query: 104 DLEQKIHYMKLEAKRLLYAKIADFSVEI 131
+L ++ R + +AD +E
Sbjct: 120 ELRRRTGAEVFAIARKVLTDLADTDLEE 147
>gnl|CDD|161969 TIGR00631, uvrb, excinuclease ABC, B subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 655
Score = 31.1 bits (71), Expect = 0.17
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 36 HADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETR---EIILAAKHRAKILAEEGCQ 92
+ADKI D + +A E+ I M Y E+H + R IL + + K A + +
Sbjct: 549 YADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELKEKEDAAKKKK 608
Query: 93 NIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADF 127
E +S L K+L++ I +LE + A+ +F
Sbjct: 609 KGEDLSDLSKKELKKLIK--QLEKEMKQAARNLEF 641
>gnl|CDD|161881 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a
histidyl-tRNA synthetase in every completed genome.
Apparent second copies from Bacillus subtilis,
Synechocystis sp., and Aquifex aeolicus are slightly
shorter, more closely related to each other than to
other hisS proteins, and actually serve as regulatory
subunits for an enzyme of histidine biosynthesis. They
were excluded from the seed alignment and score much
lower than do single copy histidyl-tRNA synthetases of
other genomes not included in the seed alignment. These
putative second copies of HisS score below the trusted
cutoff. The regulatory protein kinase GCN2 of
Saccharomyces cerevisiae (YDR283c), and related proteins
from other species designated eIF-2 alpha kinase, have a
domain closely related to histidyl-tRNA synthetase that
may serve to detect and respond to uncharged tRNA(his),
an indicator of amino acid starvation; these regulatory
proteins are not orthologous and so score below the
noise cutoff.
Length = 397
Score = 29.0 bits (66), Expect = 0.62
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 23 LRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHR 82
L LL +LD H DK+ +D RRL + IL K E+ +E++ A
Sbjct: 169 LEYREALLRYLDKHLDKLGED--SVRRLEKNPLRIL---DSK----NEKIQELLKEAPKI 219
Query: 83 AKILAEEGCQNIEQISALYLKDL 105
L EE + E++ L L
Sbjct: 220 LDFLDEESRAHFEELKE-LLDAL 241
>gnl|CDD|182958 PRK11096, ansB, L-asparaginase II; Provisional.
Length = 347
Score = 28.9 bits (65), Expect = 0.77
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 123 KIADFSVEIVREIISQKMNDDV 144
IA+ E V I SQ MND+V
Sbjct: 65 DIANVKGEQVVNIGSQDMNDEV 86
>gnl|CDD|179204 PRK01005, PRK01005, V-type ATP synthase subunit E; Provisional.
Length = 207
Score = 27.8 bits (62), Expect = 1.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 69 EEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKI 109
EEE I+ AK +AK + E + E+I + +QK+
Sbjct: 26 EEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKL 66
>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
Length = 250
Score = 27.9 bits (62), Expect = 1.4
Identities = 26/141 (18%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 7 FLVFMSLIIFLVIVVYLR--IPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEK 64
F V +I FL++V LR + ++ + +I + +A + ++++ +Y++K
Sbjct: 6 FTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQK 65
Query: 65 HSKVEEETREIILAAK-----HRAKILAE----------EGCQNIEQISALYLKDLEQKI 109
+E++ + A+ R +L E E + +E+ + K L+Q+
Sbjct: 66 QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQT 125
Query: 110 HYMKLEAKRLLYAKIADFSVE 130
++ R A +A+ ++E
Sbjct: 126 GQQMVKIIRAALADLANATLE 146
>gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 27.5 bits (62), Expect = 1.7
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 46 EARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQI 97
EA L +++E + + +EK K++EE +++ A+ A+ +E + ++I
Sbjct: 538 EAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEI 589
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 27.6 bits (61), Expect = 1.7
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 52 EKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKI-H 110
EKS +I+ Y EK S++EE+ REI + K + E+ ++ L +++ + I
Sbjct: 465 EKSNHIINHYNEKKSRLEEKIREI----EIEVKDIDEKIVDLKKRKEYLESEEINKSINE 520
Query: 111 YMKLEAKRLLYAKIADFSVEIVR 133
Y K+E+ R A + D ++I
Sbjct: 521 YNKIESAR---ADLEDIKIKINE 540
>gnl|CDD|181524 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 27.3 bits (61), Expect = 2.0
Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 56 NILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISAL------YLKDLEQK 108
N+ + E+ + + EE + L + R K L+E+ ++++A+ Y+ ++
Sbjct: 434 NLHTHFIEEETTILEEMKRYALEEEEREKTLSEKFFPGNKKVAAIAAAVNAYISSAKKD 492
>gnl|CDD|129024 smart00788, Adenylsucc_synt, Adenylosuccinate synthetase.
Adenylosuccinate synthetase plays an important role in
purine biosynthesis, by catalyzing the GTP-dependent
conversion of IMP and aspartic acid to AMP.
Adenylosuccinate synthetase has been characterized from
various sources ranging from Escherichia coli (gene
purA) to vertebrate tissues. In vertebrates, two
isozymes are present - one involved in purine
biosynthesis and the other in the purine nucleotide
cycle. The crystal structure of adenylosuccinate
synthetase from E. coli reveals that the dominant
structural element of each monomer of the homodimer is a
central beta-sheet of 10 strands. The first nine strands
of the sheet are mutually parallel with right-handed
crossover connections between the strands. The 10th
strand is antiparallel with respect to the first nine
strands. In addition, the enzyme has two antiparallel
beta-sheets, comprised of two strands and three strands
each, 11 alpha-helices and two short 3/10-helices.
Further, it has been suggested that the similarities in
the GTP-binding domains of the synthetase and the p21ras
protein are an example of convergent evolution of two
distinct families of GTP-binding proteins
PUBMED:8244965. Structures of adenylosuccinate
synthetase from Triticum aestivum and Arabidopsis
thaliana when compared with the known structures from E.
coli reveals that the overall fold is very similar to
that of the E. coli protein PUBMED:10669609.
Length = 421
Score = 27.4 bits (62), Expect = 2.1
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 35 AHADK-----IR-DDIFEARRLREKSENILMQYK---EKHSKVEEETREIILA 78
A+ DK IR D+F+ REK E +L +K E E IL
Sbjct: 134 AYEDKVARRGIRVGDLFDEDVFREKLEELLDYKNFLLKKLYGAEPVDVEEILE 186
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 27.1 bits (61), Expect = 2.6
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 100 LYLKDLEQKIHYMKLEAKRLLYAKIADFSV--------EIVREIISQ 138
L D ++K+ + E + LY ++AD +V E+V EI+ +
Sbjct: 123 LQTNDPKEKLRDL-YEERDPLYEEVADITVETDGRSPEEVVNEILEK 168
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 26.8 bits (59), Expect = 3.0
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 45 FEARRLREKSENILMQYKEK-HSKVEEETREIILAAKHRAKILAEEGCQNIEQISA 99
FE RR REK E + K++ K+E E + AAK R I A + + ++ I A
Sbjct: 3 FELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEA 58
>gnl|CDD|140235 PTZ00208, PTZ00208, 65 kDa invariant surface glycoprotein;
Provisional.
Length = 436
Score = 26.9 bits (59), Expect = 3.1
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 22/107 (20%)
Query: 44 IFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLK 103
I R N ++ + + K+ +E + KH A +AEE ++
Sbjct: 10 IIATRIPVLLVANSGDKHVKANKKLTKEGAAALCKMKHLADKVAEERADKLK-------D 62
Query: 104 DLEQKIHYMKLEAKRLL---------------YAKIADFSVEIVREI 135
+ Y++ E RL YAK++D E V+EI
Sbjct: 63 RTQNFAGYIEFELDRLDYWLEKLNGPKHSNDGYAKLSDSDTEKVKEI 109
>gnl|CDD|180496 PRK06264, cbiC, precorrin-8X methylmutase; Validated.
Length = 210
Score = 25.8 bits (57), Expect = 6.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 124 IADFSVEIVREIISQKMNDDVNS 146
IA+ S EIV+ I + + D +
Sbjct: 11 IANKSREIVKNKIKEVLGDKIKL 33
>gnl|CDD|179408 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 25.7 bits (57), Expect = 6.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 69 EEETREIILAAKHRAK-ILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKR 118
+EE EII A+ A+ IL + + +I L EQ++ KLEAKR
Sbjct: 26 DEEAEEIIAEAEADAEEILEDREAEAEREIEQLR----EQELSSAKLEAKR 72
>gnl|CDD|151434 pfam10987, DUF2806, Protein of unknown function (DUF2806). This
bacterial family of proteins has no known function.
Length = 223
Score = 25.3 bits (56), Expect = 7.3
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 79 AKHRAKILAEEGCQNIEQISALYLKDLEQ 107
A R +I QN+E I AL L
Sbjct: 4 AAKRQQIQELRKQQNLESIVALALNYCPS 32
>gnl|CDD|168917 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
Length = 140
Score = 25.3 bits (56), Expect = 8.4
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 33 LDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEE 89
++ D IR + EA+ ++E + QY+++ + ++ + +I A+ A LA E
Sbjct: 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAE 90
>gnl|CDD|163099 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene.
Length = 498
Score = 25.0 bits (55), Expect = 9.6
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 50 LREKSENILMQYKEKHSKVEEETREI-ILAAKHRAKILAEEGCQNIEQISALYLKDLEQK 108
L ++ + + ++Y +KH V REI L + + A+ G +I+ + L+
Sbjct: 259 LEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQ-- 316
Query: 109 IHYMKLEAK-RLLYAKIADFSVEI------VREI------ISQKMND-DVNSSIFEK 151
I + EA+ L A++A+ + I +R I ++Q D +VN S +E+
Sbjct: 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQ 373
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.135 0.360
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,720,283
Number of extensions: 172615
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 80
Length of query: 173
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,114,577
Effective search space: 353853622
Effective search space used: 353853622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)