RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str. psy62] (173 letters) >gnl|CDD|169691 PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated. Length = 159 Score = 107 bits (268), Expect = 2e-24 Identities = 48/156 (30%), Positives = 95/156 (60%) Query: 3 FDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYK 62 D TF F+ L++FL +VVYL++P ++ LDA AD+I++++ EARRLRE+++ +L +Y+ Sbjct: 1 MDATFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQ 60 Query: 63 EKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYA 122 K + E+E +I+ AA+ A+ L E + E+ A K EQKI + +A + + Sbjct: 61 RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRS 120 Query: 123 KIADFSVEIVREIISQKMNDDVNSSIFEKTISSIQS 158 D ++ +++++K++ S +F+ ++ +++ Sbjct: 121 SAVDLAIAAAEKLLAEKVDAKAASELFKDALAQVKT 156 >gnl|CDD|184062 PRK13455, PRK13455, F0F1 ATP synthase subunit B; Provisional. Length = 184 Score = 81.0 bits (200), Expect = 2e-16 Identities = 42/143 (29%), Positives = 81/143 (56%), Gaps = 1/143 (0%) Query: 7 FLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHS 66 F+V ++ ++F+ I+VY ++P ++ LD A+ IR ++ EAR LRE+++ +L Y+ K Sbjct: 30 FVVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQR 89 Query: 67 KVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIAD 126 +V+E+ I+ AAK A+ AE+ ++E A L E +I + A + + + Sbjct: 90 EVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVS 149 Query: 127 FSVEIVREIISQKMN-DDVNSSI 148 +V ++I+++M D N+ I Sbjct: 150 VAVAAAADVIAKQMTAADANALI 172 >gnl|CDD|184697 PRK14475, PRK14475, F0F1 ATP synthase subunit B; Provisional. Length = 167 Score = 61.5 bits (149), Expect = 1e-10 Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 7 FLVFMSLIIFLVIVVYLRI-PSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65 F V L+IF I++ L++ P L LDA+A KI+ ++ EA+RLRE+++ +L K + Sbjct: 12 FWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAER 71 Query: 66 SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIA 125 + E + ++ AAK A+ + E + +E+ + E+KI + +A + A Sbjct: 72 EEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAV 131 Query: 126 DFSVEIVREIISQKM 140 D + + +++ ++ Sbjct: 132 DLAAQAAETVLAARL 146 >gnl|CDD|139585 PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional. Length = 173 Score = 45.8 bits (108), Expect = 7e-06 Identities = 36/155 (23%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Query: 8 LVFMSLIIFLVIVVYLRIPS--ILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65 LV +L+ FLV+V+ L+ + ++L LD A +++DI +A LR ++E +L Y+ + Sbjct: 18 LVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARL 77 Query: 66 SKVEEETREIILAAKHRA----KILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLY 121 + ++E I+ AK A L EE ++ +K++E K +A L Sbjct: 78 NSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIE----LAKGKALSQLQ 133 Query: 122 AKIADFSVEIVREIISQKMNDDVNSSIFEKTISSI 156 +I + ++ I +++ +++ + + E ++ + Sbjct: 134 NQIVEMTITIASKVLEKQLKKEDYKAFIETELAKL 168 >gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated. Length = 156 Score = 39.8 bits (94), Expect = 4e-04 Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 1 MHFDETFLVFMSLIIFLVIVVYLR---IPSILLSFLDAHADKIRDDIFEARRLREKSENI 57 M+ + T + LI FL++V ++ P I+ L+ KI D + A R +++ E Sbjct: 1 MNLNGTLIG--QLIAFLILVWFIMKFVWPPIM-KALEERQKKIADGLAAAERAKKELELA 57 Query: 58 LMQYKEKHSKVEEETREIILAAKHRA-KILAE---EGCQNIEQISALYLKDLEQKIHYMK 113 +Y+ + ++ E EII AK RA +I+ E E +I A ++EQ+ Sbjct: 58 QAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERK--- 114 Query: 114 LEAKRLLYAKIADFSVEIVREIISQKMNDDVNSSIFEKTISSI 156 A+ L ++AD +V +I+ ++++ S + +K I+ + Sbjct: 115 -RAREELRKQVADLAVAGAEKILGRELDAAAQSDLIDKLIAEL 156 >gnl|CDD|172947 PRK14472, PRK14472, F0F1 ATP synthase subunit B; Provisional. Length = 175 Score = 38.6 bits (90), Expect = 8e-04 Identities = 33/153 (21%), Positives = 74/153 (48%), Gaps = 2/153 (1%) Query: 8 LVFMSLIIFLVIVVYLRIPSI--LLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65 L+F + + F+++++ L+ + +LS L+ I+ I A ++++E IL + +E Sbjct: 20 LIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELL 79 Query: 66 SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIA 125 +K + E +II K A+ L E + + + +++I K A +L ++A Sbjct: 80 AKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVA 139 Query: 126 DFSVEIVREIISQKMNDDVNSSIFEKTISSIQS 158 D +V+ +II ++ D + + I + + Sbjct: 140 DLAVKGAEKIIRTSLDADKQKKVVDSMIQDLST 172 >gnl|CDD|168615 PRK06568, PRK06568, F0F1 ATP synthase subunit B; Validated. Length = 154 Score = 35.3 bits (81), Expect = 0.008 Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 1 MHF-DETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILM 59 M+F DE+F + +S +IF V ++Y +L+ LDA ++++ + +A +L+E + + Sbjct: 1 MNFLDESFWLAVSFVIF-VYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFE 59 Query: 60 QYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRL 119 Q + K+E ++I + K + +E + IE+ D Q I K A + Sbjct: 60 QTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKE 119 Query: 120 LYAKIADFSVEIVRE 134 L + D +++V E Sbjct: 120 LQDEFCDEVIKLVSE 134 >gnl|CDD|169692 PRK09174, PRK09174, F0F1 ATP synthase subunit B'; Validated. Length = 204 Score = 34.0 bits (78), Expect = 0.019 Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 6 TFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65 TF +F +F+ V+ RI I+ + D+I D+ +A RL+++++ + Y+++ Sbjct: 62 TFGLFY---LFMSRVILPRIGGII----ETRRDRIAQDLDQAARLKQEADAAVAAYEQEL 114 Query: 66 SKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIA 125 ++ + I AA+ AK AE IE LK+ E +I +K +A + + Sbjct: 115 AQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAE 174 Query: 126 DFSVEIVREIISQKMND-DVNSSI 148 + + IV ++I + V +++ Sbjct: 175 ETAAAIVEQLIGGTADKASVAAAV 198 >gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional. Length = 164 Score = 34.1 bits (78), Expect = 0.019 Identities = 32/155 (20%), Positives = 73/155 (47%), Gaps = 10/155 (6%) Query: 8 LVFMSLIIFLVIVVYLR--IPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKH 65 L+ LI FL+++ LR + +L+ L+ +I + + +A ++RE+ N Y+ + Sbjct: 10 LLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAEL 69 Query: 66 SKVEEETREIILAAKHRAKILAEE----GCQNIEQISALYLKDLEQKIHYMKLEAKRLLY 121 +K +E +I+ A+ RA+ E + E+I EQ+ M E K Sbjct: 70 AKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELK---- 125 Query: 122 AKIADFSVEIVREIISQKMNDDVNSSIFEKTISSI 156 ++IAD ++ ++ + ++ ++++++ Sbjct: 126 SQIADLVTLTASRVLGAELQARGHDALIAESLAAL 160 >gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase. Length = 246 Score = 32.3 bits (74), Expect = 0.069 Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 18/148 (12%) Query: 1 MHFDETFLVFMSLIIFLVIVVYLR--IPSILLSFLDAHADKIRDDIFEARRLREKSENIL 58 M D F V LI FL++V L+ + +L +DA KI ++ +A + ++E Sbjct: 1 MLID-WFTVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQER 59 Query: 59 MQYKEKHS---------------KVEEETREIILAAKHRAKILAEEGCQNIEQISALYLK 103 +Y+EK+ + + E + ++ A+ A + E+ + + + A Sbjct: 60 REYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSD 119 Query: 104 DLEQKIHYMKLEAKRLLYAKIADFSVEI 131 +L ++ R + +AD +E Sbjct: 120 ELRRRTGAEVFAIARKVLTDLADTDLEE 147 >gnl|CDD|161969 TIGR00631, uvrb, excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 655 Score = 31.1 bits (71), Expect = 0.17 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 36 HADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETR---EIILAAKHRAKILAEEGCQ 92 +ADKI D + +A E+ I M Y E+H + R IL + + K A + + Sbjct: 549 YADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELKEKEDAAKKKK 608 Query: 93 NIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADF 127 E +S L K+L++ I +LE + A+ +F Sbjct: 609 KGEDLSDLSKKELKKLIK--QLEKEMKQAARNLEF 641 >gnl|CDD|161881 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. Length = 397 Score = 29.0 bits (66), Expect = 0.62 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 10/83 (12%) Query: 23 LRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHR 82 L LL +LD H DK+ +D RRL + IL K E+ +E++ A Sbjct: 169 LEYREALLRYLDKHLDKLGED--SVRRLEKNPLRIL---DSK----NEKIQELLKEAPKI 219 Query: 83 AKILAEEGCQNIEQISALYLKDL 105 L EE + E++ L L Sbjct: 220 LDFLDEESRAHFEELKE-LLDAL 241 >gnl|CDD|182958 PRK11096, ansB, L-asparaginase II; Provisional. Length = 347 Score = 28.9 bits (65), Expect = 0.77 Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 123 KIADFSVEIVREIISQKMNDDV 144 IA+ E V I SQ MND+V Sbjct: 65 DIANVKGEQVVNIGSQDMNDEV 86 >gnl|CDD|179204 PRK01005, PRK01005, V-type ATP synthase subunit E; Provisional. Length = 207 Score = 27.8 bits (62), Expect = 1.4 Identities = 13/41 (31%), Positives = 21/41 (51%) Query: 69 EEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKI 109 EEE I+ AK +AK + E + E+I + +QK+ Sbjct: 26 EEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKL 66 >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional. Length = 250 Score = 27.9 bits (62), Expect = 1.4 Identities = 26/141 (18%), Positives = 62/141 (43%), Gaps = 17/141 (12%) Query: 7 FLVFMSLIIFLVIVVYLR--IPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYKEK 64 F V +I FL++V LR + ++ + +I + +A + ++++ +Y++K Sbjct: 6 FTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQK 65 Query: 65 HSKVEEETREIILAAK-----HRAKILAE----------EGCQNIEQISALYLKDLEQKI 109 +E++ + A+ R +L E E + +E+ + K L+Q+ Sbjct: 66 QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQT 125 Query: 110 HYMKLEAKRLLYAKIADFSVE 130 ++ R A +A+ ++E Sbjct: 126 GQQMVKIIRAALADLANATLE 146 >gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed. Length = 782 Score = 27.5 bits (62), Expect = 1.7 Identities = 13/52 (25%), Positives = 30/52 (57%) Query: 46 EARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQI 97 EA L +++E + + +EK K++EE +++ A+ A+ +E + ++I Sbjct: 538 EAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEI 589 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 27.6 bits (61), Expect = 1.7 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%) Query: 52 EKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKI-H 110 EKS +I+ Y EK S++EE+ REI + K + E+ ++ L +++ + I Sbjct: 465 EKSNHIINHYNEKKSRLEEKIREI----EIEVKDIDEKIVDLKKRKEYLESEEINKSINE 520 Query: 111 YMKLEAKRLLYAKIADFSVEIVR 133 Y K+E+ R A + D ++I Sbjct: 521 YNKIESAR---ADLEDIKIKINE 540 >gnl|CDD|181524 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated. Length = 499 Score = 27.3 bits (61), Expect = 2.0 Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 56 NILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISAL------YLKDLEQK 108 N+ + E+ + + EE + L + R K L+E+ ++++A+ Y+ ++ Sbjct: 434 NLHTHFIEEETTILEEMKRYALEEEEREKTLSEKFFPGNKKVAAIAAAVNAYISSAKKD 492 >gnl|CDD|129024 smart00788, Adenylsucc_synt, Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins PUBMED:8244965. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein PUBMED:10669609. Length = 421 Score = 27.4 bits (62), Expect = 2.1 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 9/53 (16%) Query: 35 AHADK-----IR-DDIFEARRLREKSENILMQYK---EKHSKVEEETREIILA 78 A+ DK IR D+F+ REK E +L +K E E IL Sbjct: 134 AYEDKVARRGIRVGDLFDEDVFREKLEELLDYKNFLLKKLYGAEPVDVEEILE 186 >gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed. Length = 175 Score = 27.1 bits (61), Expect = 2.6 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 9/47 (19%) Query: 100 LYLKDLEQKIHYMKLEAKRLLYAKIADFSV--------EIVREIISQ 138 L D ++K+ + E + LY ++AD +V E+V EI+ + Sbjct: 123 LQTNDPKEKLRDL-YEERDPLYEEVADITVETDGRSPEEVVNEILEK 168 >gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional. Length = 567 Score = 26.8 bits (59), Expect = 3.0 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 45 FEARRLREKSENILMQYKEK-HSKVEEETREIILAAKHRAKILAEEGCQNIEQISA 99 FE RR REK E + K++ K+E E + AAK R I A + + ++ I A Sbjct: 3 FELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEA 58 >gnl|CDD|140235 PTZ00208, PTZ00208, 65 kDa invariant surface glycoprotein; Provisional. Length = 436 Score = 26.9 bits (59), Expect = 3.1 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 22/107 (20%) Query: 44 IFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLK 103 I R N ++ + + K+ +E + KH A +AEE ++ Sbjct: 10 IIATRIPVLLVANSGDKHVKANKKLTKEGAAALCKMKHLADKVAEERADKLK-------D 62 Query: 104 DLEQKIHYMKLEAKRLL---------------YAKIADFSVEIVREI 135 + Y++ E RL YAK++D E V+EI Sbjct: 63 RTQNFAGYIEFELDRLDYWLEKLNGPKHSNDGYAKLSDSDTEKVKEI 109 >gnl|CDD|180496 PRK06264, cbiC, precorrin-8X methylmutase; Validated. Length = 210 Score = 25.8 bits (57), Expect = 6.0 Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 124 IADFSVEIVREIISQKMNDDVNS 146 IA+ S EIV+ I + + D + Sbjct: 11 IANKSREIVKNKIKEVLGDKIKL 33 >gnl|CDD|179408 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional. Length = 188 Score = 25.7 bits (57), Expect = 6.2 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 69 EEETREIILAAKHRAK-ILAEEGCQNIEQISALYLKDLEQKIHYMKLEAKR 118 +EE EII A+ A+ IL + + +I L EQ++ KLEAKR Sbjct: 26 DEEAEEIIAEAEADAEEILEDREAEAEREIEQLR----EQELSSAKLEAKR 72 >gnl|CDD|151434 pfam10987, DUF2806, Protein of unknown function (DUF2806). This bacterial family of proteins has no known function. Length = 223 Score = 25.3 bits (56), Expect = 7.3 Identities = 10/29 (34%), Positives = 12/29 (41%) Query: 79 AKHRAKILAEEGCQNIEQISALYLKDLEQ 107 A R +I QN+E I AL L Sbjct: 4 AAKRQQIQELRKQQNLESIVALALNYCPS 32 >gnl|CDD|168917 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated. Length = 140 Score = 25.3 bits (56), Expect = 8.4 Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 33 LDAHADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEE 89 ++ D IR + EA+ ++E + QY+++ + ++ + +I A+ A LA E Sbjct: 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAE 90 >gnl|CDD|163099 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. Length = 498 Score = 25.0 bits (55), Expect = 9.6 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 17/117 (14%) Query: 50 LREKSENILMQYKEKHSKVEEETREI-ILAAKHRAKILAEEGCQNIEQISALYLKDLEQK 108 L ++ + + ++Y +KH V REI L + + A+ G +I+ + L+ Sbjct: 259 LEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQ-- 316 Query: 109 IHYMKLEAK-RLLYAKIADFSVEI------VREI------ISQKMND-DVNSSIFEK 151 I + EA+ L A++A+ + I +R I ++Q D +VN S +E+ Sbjct: 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQ 373 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.135 0.360 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,720,283 Number of extensions: 172615 Number of successful extensions: 597 Number of sequences better than 10.0: 1 Number of HSP's gapped: 584 Number of HSP's successfully gapped: 80 Length of query: 173 Length of database: 5,994,473 Length adjustment: 87 Effective length of query: 86 Effective length of database: 4,114,577 Effective search space: 353853622 Effective search space used: 353853622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (24.6 bits)