RPSBLAST alignment of GI: 254781085 and protein with PDBid: 2pff

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 18/99 (18%)

Query: 38   DKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQI 97
            DKI       R +    + IL   +E HS V+  +    L  K+R + L     Q     
Sbjct: 1213 DKI------GRSVPAPGKGILTTAREHHSSVKYASPN--LNMKYRKRQLVTREAQ----- 1259

Query: 98   SALYLKD-LEQKIHYMKLEAKRLLYAKIADFSVEIVREI 135
                +KD +E ++  +KLEA+ +      +F +E  REI
Sbjct: 1260 ----IKDWVENELEALKLEAEEIPSEDQNEFLLERTREI 1294