RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
         (173 letters)



>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 254

 Score = 26.3 bits (58), Expect = 1.6
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 36  HADKIRDDIFEARRLREKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEG 90
           H  K+   I   R++   SE+ L+   ++     E  REI    +      A  G
Sbjct: 146 HMRKVNAQI---RKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGG 197


>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 154

 Score = 25.0 bits (54), Expect = 4.2
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 3   FDETFLVFMSLIIFLVIVVYLRIPSILLSFLDAHADKIRDDIFEARRLREKSENILMQYK 62
            +     F   I+ ++++ Y+R P +  + LD   + I  DI  A    ++       YK
Sbjct: 92  IERQGEDFYEEIMRVIVLGYIR-PELNYAGLDKLIEDIHTDIRVALNSMDRPSYS--SYK 148

Query: 63  E 63
           +
Sbjct: 149 K 149


>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 70

 Score = 23.4 bits (51), Expect = 9.6
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 122 AKIADFSVEIVREIISQKMND 142
             +   + + + EI   KM D
Sbjct: 25  KIVGKVTRKQIEEIAKTKMPD 45


>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter
           pylori [TaxId: 210]}
          Length = 125

 Score = 23.5 bits (50), Expect = 9.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 61  YKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDLEQKIHYM 112
           YK  H+ V      I+   K+R K+L       +++I     K+L  +I  M
Sbjct: 2   YKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEM 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.360 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,265
Number of extensions: 28067
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 25
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.0 bits)