HHsearch alignment for GI: 254781086 and conserved domain: PRK06328
>PRK06328 type III secretion system protein; Validated.
Probab=96.53 E-value=0.068 Score=31.62 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL 153 (176)
Q Consensus 74 ~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl 153 (176)
T Consensus 26 ~~~~~A~eilE~Ak~~Ae~~~~ea~~e~e~~~eea~~~G~~eG~~~~~~~la~~~~e~~~~~~~~e~~lv~lvl~aarKI 105 (223)
T PRK06328 26 SALLDAKELLEKTKEDSEAYTQETHEECAELREEAKNQGFKEGSEAWSKQLAFLEKETQALRIQVKEALVPLAIASVKKI 105 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99874999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred -HHH--CCHHHHHHHHHHHHHHHH
Q ss_conf -841--599999999999994210
Q gi|254781086|r 154 -GFS--VSDADVQKILDRKRDGID 174 (176)
Q Consensus 154 -~~~--~~~~~~~~~i~~~~~~i~ 174 (176)
T Consensus 106 Ig~el~~~pe~vl~iVr~aL~~vr 129 (223)
T PRK06328 106 IGKELELHPETIVSIISEALKELT 129 (223)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 888876088999999999999986