HHsearch alignment for GI: 254781086 and conserved domain: PRK09098
>PRK09098 type III secretion system protein HrpB; Validated.
Probab=92.08 E-value=0.96 Score=24.50 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999--------9999999---999999999999999
Q gi|254781086|r 72 VESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLH--------KLSNAQN---EIDDMQKKASQEVYS 140 (176)
Q Consensus 72 ae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~--------~~~~a~~---~I~~~k~~a~~ei~~ 140 (176)
T Consensus 34 ~~~~~~~~~~~L~~Ar~eA~~Il~~Ar~~A~~I~~~Ar~e~e~a~~~GY~eG~~ral~e~~~r~a~~~~~~~~~~~~m~~ 113 (229)
T PRK09098 34 LAAVHAERDAVLAAARDRAERIAAEARAQAEALLEDARREADRSARLGYAAGLRQALAEWHARGADHAFAERRAARRMRE 113 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999989999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCHH-HHHHHHHH
Q ss_conf 99999999999998415999-99999999
Q gi|254781086|r 141 IVGEVTKDLVRKLGFSVSDA-DVQKILDR 168 (176)
Q Consensus 141 ~a~~~a~~i~~kl~~~~~~~-~~~~~i~~ 168 (176)
T Consensus 114 rLa~iV~~AVekIv~~e~~~aL~~ra~~~ 142 (229)
T PRK09098 114 RLAEIVAAAVEQIVHGEDPAALFARAAQT 142 (229)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999999713988899999999