HHsearch alignment for GI: 254781086 and conserved domain: PRK13454
>PRK13454 F0F1 ATP synthase subunit B'; Provisional.
Probab=98.57 E-value=7e-05 Score=50.06 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=95.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5334689988598876889999999999999999999554089999999-999999999999999999999999999999
Q gi|254781086|r 6 SSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR-RNLISSDQEKMDSAKREVESMISSYEESLA 84 (176)
Q Consensus 6 ~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R-~~~I~~~l~~A~~~~~eae~~~~~~e~~l~ 84 (176)
T Consensus 12 ~~~~~~~~~Gm-PQld~~-~f~sQiFWl~i~F~ily~vl~---k~~lPrI~~vLe~R~~~I~~dL~~Ae~~k~eAe~--- 83 (181)
T PRK13454 12 AADAAASAPGM-PQLDFD-TFPNQIFWLLVTLVAIYFVLT---RVALPRIGAVLAERQGTITNDLAAAEELKQKAVE--- 83 (181)
T ss_pred HHHHCCCCCCC-CCCCCH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf 76503457999-999902-407899999999999999999---9999888989999999999889999999999999---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999999999999999999999999999999999999999999-------9999999999998415
Q gi|254781086|r 85 IARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSI-------VGEVTKDLVRKLGFSV 157 (176)
Q Consensus 85 eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~-------a~~~a~~i~~kl~~~~ 157 (176)
T Consensus 84 -~~~~ye~~L~~Ar~eA~~ii~eAr~~a~~~~~~~~~~a~~el~~~i~~AE~~I~~~K~~Am~~i~~iA~d~a~~Iv~kL 162 (181)
T PRK13454 84 -AEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAAL 162 (181)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999999999999999999999999999999999999999999999999999999889999999999999999998
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 99999999999994
Q gi|254781086|r 158 SDADVQKILDRKRD 171 (176)
Q Consensus 158 ~~~~~~~~i~~~~~ 171 (176)
T Consensus 163 ~gk~~~~~v~aaV~ 176 (181)
T PRK13454 163 GGKADAAAVDAAVA 176 (181)
T ss_pred HCCCCHHHHHHHHH
T ss_conf 57587788999999