HHsearch alignment for GI: 254781086 and conserved domain: TIGR03321
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=99.91 E-value=1e-21 Score=154.03 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=144.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85988768899999999999999999995540899999999999999999999999999999999999999999999999
Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEII 94 (176)
Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii 94 (176)
T Consensus 2 ~idw~T~~~q----~iNfliL~~lL~rFl~~Pv~~~i~~R~~~I~~~l~~A~~~~~eA~~~~~~~e~~~~~~~~e~~~~l 77 (246)
T TIGR03321 2 LIDWFTVIAQ----LINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLL 77 (246)
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0109999999----999999999999996889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999841599999-99999999421
Q gi|254781086|r 95 DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADV-QKILDRKRDGI 173 (176)
Q Consensus 95 ~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~-~~~i~~~~~~i 173 (176)
T Consensus 78 ~~A~~eAe~er~~ll~~Ar~eae~~r~~~~~~l~~E~~~~~~~l~~r~~~~~~~ia~k~L~~Lad~~le~~~v~~f~~rL 157 (246)
T TIGR03321 78 TKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQRL 157 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999998663247999999999998
Q ss_pred H
Q ss_conf 0
Q gi|254781086|r 174 D 174 (176)
Q Consensus 174 ~ 174 (176)
T Consensus 158 ~ 158 (246)
T TIGR03321 158 R 158 (246)
T ss_pred H
T ss_conf 7