HHsearch alignment for GI: 254781086 and conserved domain: cd00520
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=93.20 E-value=0.49 Score=26.31 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 (176)
Q Consensus 41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~ 120 (176)
T Consensus 95 ri~iP~lT~--E~R~~l~K~ak~~~E~aK~~iR~iR~~~~~~ikk~~k-~~~iseD~~k~~~~~iqkltd~~~~~id~~~ 171 (179)
T cd00520 95 RVNLPPLTE--ERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEK-EKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 736998999--9999999999999999999999999999999987663-3899876888999999999999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781086|r 121 SNAQNE 126 (176)
Q Consensus 121 ~~a~~~ 126 (176)
T Consensus 172 ~~Keke 177 (179)
T cd00520 172 KSKEKE 177 (179)
T ss_pred HHHHHH
T ss_conf 999885