HHsearch alignment for GI: 254781086 and conserved domain: cd00520

>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=93.20  E-value=0.49  Score=26.31  Aligned_cols=83  Identities=23%  Similarity=0.345  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99554089999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r   41 RFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL  120 (176)
Q Consensus        41 ~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~  120 (176)
T Consensus        95 ri~iP~lT~--E~R~~l~K~ak~~~E~aK~~iR~iR~~~~~~ikk~~k-~~~iseD~~k~~~~~iqkltd~~~~~id~~~  171 (179)
T cd00520          95 RVNLPPLTE--ERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEK-EKEISEDEVKKAEEDLQKLTDEYIKKIDELL  171 (179)
T ss_pred             EECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             736998999--9999999999999999999999999999999987663-3899876888999999999999999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254781086|r  121 SNAQNE  126 (176)
Q Consensus       121 ~~a~~~  126 (176)
T Consensus       172 ~~Keke  177 (179)
T cd00520         172 KSKEKE  177 (179)
T ss_pred             HHHHHH
T ss_conf             999885