HHsearch alignment for GI: 254781086 and conserved domain: pfam00430
>pfam00430 ATP-synt_B ATP synthase B/B' CF(0). Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006
Probab=98.61 E-value=5.4e-05 Score=50.73 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf 7688999999999999999999955408---9999999999999999999999999999999----99999999999999
Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRL---SSIMEVRRNLISSDQEKMDSAKREVESMISS----YEESLAIARAHAKE 92 (176)
Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi---~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~----~e~~l~eak~ea~~ 92 (176)
T Consensus 1 tl~~qlI~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~ea~~~~~~~e~~l~~a~~ea~~i~~~a~~~a~~ 80 (132)
T pfam00430 1 TLETNLINFLILVGLLIYFGYKPLGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQK 80 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999999999999997988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 93 IIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLV 150 (176)
Q Consensus 93 ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~ 150 (176)
T Consensus 81 ~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~-------~e~~~la~~~aekil 131 (132)
T pfam00430 81 LKEEILAEAQKDAERLLESARAEIEQEKEQALAELR-------QQVAALAVQIAEKLL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999999999999-------999999999997655