Query gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 127 out of 1799
Neff 8.1
Searched_HMMs 33803
Date Wed Jun 1 22:43:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781086.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2cly_A ATP synthase B chain, 99.8 6.1E-19 1.8E-23 136.5 14.3 150 23-175 54-203 (214)
2 >1l2p_A ATP synthase B chain; 97.8 0.00023 6.7E-09 46.5 9.7 59 81-139 2-60 (61)
3 >1b9u_A Protein (ATP synthase) 96.9 0.001 3E-08 42.5 4.2 32 15-51 2-33 (34)
4 >2cly_A ATP synthase B chain, 96.6 0.05 1.5E-06 32.0 14.5 116 4-121 41-163 (214)
5 >1l2p_A ATP synthase B chain; 95.3 0.2 6E-06 28.3 10.0 57 71-127 3-59 (61)
6 >2khk_A ATP synthase subunit B 94.8 0.0027 7.9E-08 39.9 -1.6 49 49-97 2-50 (53)
7 >2k88_A Vacuolar proton pump s 84.6 2.7 8.1E-05 21.3 7.9 46 82-127 10-55 (60)
8 >2kk7_A V-type ATP synthase su 84.3 2.8 8.3E-05 21.2 6.0 35 80-114 13-47 (52)
9 >2rdd_B UPF0092 membrane prote 70.1 3.6 0.00011 20.5 2.7 20 23-42 4-23 (37)
10 >1few_A Second mitochondria-de 69.4 7.6 0.00022 18.6 16.9 24 49-72 93-116 (184)
11 >1u2m_A Histone-like protein H 60.7 7.7 0.00023 18.5 2.9 91 62-152 18-112 (143)
12 >3g9g_A Suppressor of yeast pr 49.2 17 0.00051 16.4 5.0 29 29-57 42-72 (254)
13 >1v54_D Cytochrome C oxidase s 47.8 18 0.00053 16.2 3.2 40 8-47 66-107 (107)
14 >2oar_A Large-conductance mech 45.6 20 0.00058 16.0 4.1 37 12-52 86-122 (126)
15 >3hm6_X Plexin-B1; structural 37.0 16 0.00047 16.6 1.4 19 9-27 68-86 (285)
16 >2f95_B Sensory rhodopsin II t 32.9 27 0.00079 15.2 2.0 46 36-81 76-123 (163)
17 >3c0w_A Intron-encoded endonuc 32.2 24 0.00071 15.5 1.7 28 20-47 20-47 (62)
18 >2zon_G Cytochrome C551; nitri 31.1 18 0.00052 16.3 0.9 25 9-33 58-82 (87)
19 >1wve_C 4-cresol dehydrogenase 24.5 39 0.0012 14.1 1.7 19 4-22 17-35 (80)
20 >2f93_B Sensory rhodopsin II t 22.8 47 0.0014 13.7 2.2 27 36-62 78-104 (122)
21 >3frt_A Charged multivesicular 21.1 51 0.0015 13.4 11.3 59 58-116 12-70 (218)
No 1
>>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} (A:)
Probab=99.82 E-value=6.1e-19 Score=136.52 Aligned_cols=150 Identities=11% Similarity=-0.019 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999554089999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAE 102 (176)
Q Consensus 23 ~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~ 102 (176)
+--||.+|+|++|++++++|+||||.+++|+|.+.|.+++++|+..+.++.+...+|++.+.+++.++..|++.++..+.
T Consensus 54 n~e~~~~i~F~i~~~l~~k~~~~~i~~~ld~R~~~I~~~l~~a~~~~~ea~~~~~e~~~~l~~~~~~~~~I~~~ake~a~ 133 (214)
T 2cly_A 54 TPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIA 133 (214)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 80799999999999999999899999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999999999999999999999999999999998415999999999999942106
Q gi|254781086|r 103 QNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDGIDA 175 (176)
Q Consensus 103 ~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~~~a~~~a~~i~~kl~~~~~~~~~~~~i~~~~~~i~~ 175 (176)
...+....+...++.+.+.++...+...+..+...+++.+++.+...+.+ .++....++++++++.+++.
T Consensus 134 ~~~E~~~~e~~~~~~~~~k~~ld~~~~~e~~~r~~~q~~~v~~v~~~v~k---~i~~~~~~~li~~~I~~L~~ 203 (214)
T 2cly_A 134 MALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQ---SISAQQEKETIAKCIADLKL 203 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999998---75888899999999999998
No 2
>>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} (A:)
Probab=97.82 E-value=0.00023 Score=46.50 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 81 ESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVY 139 (176)
Q Consensus 81 ~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~ei~ 139 (176)
+.|.+|+.++..|+++|+..+..++++.+.++..+.++++..+..+|+.++..+..+|+
T Consensus 2 e~L~eAk~eAa~Ii~~A~kra~qIveeak~~A~~Ea~rIi~~A~aeIe~Er~~a~~eLR 60 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77799999999999999988999999999999999999999899999999999999750
No 3
>>1b9u_A Protein (ATP synthase); membrane protein; HET: GMA; NMR {Synthetic} (A:)
Probab=96.93 E-value=0.001 Score=42.50 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8598876889999999999999999999554089999
Q gi|254781086|r 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIM 51 (176)
Q Consensus 15 qld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l 51 (176)
.+|. |.++|. |.|++|+++..||+||||.+.|
T Consensus 2 niNa-Tl~gQ~----i~F~~fvwF~mKfVWPPl~~ai 33 (34)
T 1b9u_A 2 NLNA-TILGQA----IAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp CCHH-HHHHHH----HHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6118-999999----9999999999998623888860
No 4
>>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} (A:)
Probab=96.63 E-value=0.05 Score=32.01 Aligned_cols=116 Identities=6% Similarity=-0.123 Sum_probs=66.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 645334689988598876889999999999999999999554089999999---999999999999999999999999--
Q gi|254781086|r 4 SSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVR---RNLISSDQEKMDSAKREVESMISS-- 78 (176)
Q Consensus 4 ~~~~~~~~gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~~R---~~~I~~~l~~A~~~~~eae~~~~~-- 78 (176)
......|.|+.-+|.+||. +..++|.|++++.+++..+..-+.+=.+.= -+.....-.++.+...+.++.+..
T Consensus 41 ~~~~l~Skei~v~n~e~~~--~i~F~i~~~l~~k~~~~~i~~~ld~R~~~I~~~l~~a~~~~~ea~~~~~e~~~~l~~~~ 118 (214)
T 2cly_A 41 LILYLLSKEIYVITPETFS--AISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALV 118 (214)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCEEECHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999977853068807999--99999999999999899999999998999999999999999999999999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --9999999999999999999999999999999999999999999
Q gi|254781086|r 79 --YEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLS 121 (176)
Q Consensus 79 --~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~ 121 (176)
.+..+..++..+....+.+..+..........+......+...
T Consensus 119 ~~~~~I~~~ake~a~~~~E~~~~e~~~~~~~~~k~~ld~~~~~e~ 163 (214)
T 2cly_A 119 QKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQN 163 (214)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999
No 5
>>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} (A:)
Probab=95.33 E-value=0.2 Score=28.29 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 71 EVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176)
Q Consensus 71 eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176)
.......+....+.+|+..+..|+++++..+....+..+..++.+++.....+..++
T Consensus 3 ~L~eAk~eAa~Ii~~A~kra~qIveeak~~A~~Ea~rIi~~A~aeIe~Er~~a~~eL 59 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 779999999999999998899999999999999999999989999999999999975
No 6
>>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12} (A:)
Probab=94.84 E-value=0.0027 Score=39.90 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999999999
Q gi|254781086|r 49 SIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKV 97 (176)
Q Consensus 49 ~~l~~R~~~I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a 97 (176)
+.|++|+..|.++|..|++.+.+.+.........|.+++.++.+|++++
T Consensus 2 ~aieeRqkkIAdGLaaAerak~eLelA~~~a~~~L~eAK~~AaeiI~qA 50 (53)
T 2khk_A 2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQA 50 (53)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3788999898767999997789999999999999999999999999975
No 7
>>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} (A:)
Probab=84.57 E-value=2.7 Score=21.29 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999999
Q gi|254781086|r 82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEI 127 (176)
Q Consensus 82 ~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I 127 (176)
.|..|..++.+++++|+..-..-+..++.++..+|+.-..+-+.+.
T Consensus 10 qLL~AEk~A~~iV~eARk~k~~RLKqAKeEA~~EIe~yr~q~E~ef 55 (60)
T 2k88_A 10 TLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKEL 55 (60)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999899999999999999998898999999999999999999998
No 8
>>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} (A:)
Probab=84.32 E-value=2.8 Score=21.22 Aligned_cols=35 Identities=34% Similarity=0.320 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999
Q gi|254781086|r 80 EESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEK 114 (176)
Q Consensus 80 e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ 114 (176)
.+.|.+|+.++..|+.+|..+...+++.+..++++
T Consensus 13 sKIleDA~~~A~kI~sEAekEk~~il~KAkeEAEk 47 (52)
T 2kk7_A 13 SKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999888689999989998899999998999998
No 9
>>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} (B:)
Probab=70.07 E-value=3.6 Score=20.53 Aligned_cols=20 Identities=30% Similarity=0.394 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999
Q gi|254781086|r 23 SQFFWLAIIFGIFYWVTHRF 42 (176)
Q Consensus 23 ~q~fw~~I~F~il~~il~~~ 42 (176)
++++++++.|++|||++.+.
T Consensus 4 ~~~~~~v~i~~ifYFllIRP 23 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRP 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCH
T ss_conf 89999999999999999372
No 10
>>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} (A:)
Probab=69.45 E-value=7.6 Score=18.55 Aligned_cols=24 Identities=4% Similarity=-0.188 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254781086|r 49 SIMEVRRNLISSDQEKMDSAKREV 72 (176)
Q Consensus 49 ~~l~~R~~~I~~~l~~A~~~~~ea 72 (176)
.-+..+...+..+|..-..+....
T Consensus 93 ~e~~~~~~~l~~GL~KL~ea~~~V 116 (184)
T 1few_A 93 QEYLKLETTWMTAVGLSEMAAEAA 116 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 11
>>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} (A:)
Probab=60.67 E-value=7.7 Score=18.51 Aligned_cols=91 Identities=8% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999----9999999999999999999999999999999999999999
Q gi|254781086|r 62 QEKMDSAKREVESMISSYEESLAIARAHAKEIIDKV----VAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137 (176)
Q Consensus 62 l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a----~~~a~~~~e~~~~~a~~ei~~~~~~a~~~I~~~k~~a~~e 137 (176)
...+.......+.....++..+.....+......+. ..............-..++.+.....+.++...+......
T Consensus 18 ~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~~~~~ls~~~~~~~~~el~~k~~elq~~~~~~~~~l~~~~~~~~~~ 97 (143)
T 1u2m_A 18 VAQKTGVSNTLENEFKGRASELQRXETDLQAKXKKLQSXKAGSDRTKLEKDVXAQRQTFAQKAQAFEQDRARRSNEERGK 97 (143)
T ss_dssp HHHHHTTTTTTC---------------------------------------------------------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999989999999999999999999998708898999899999999999999999999999999999878
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254781086|r 138 VYSIVGEVTKDLVRK 152 (176)
Q Consensus 138 i~~~a~~~a~~i~~k 152 (176)
+...+......++++
T Consensus 98 l~~~i~~~i~~ia~~ 112 (143)
T 1u2m_A 98 LVTRIQTAVKSVANS 112 (143)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 12
>>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} (A:1-254)
Probab=49.16 E-value=17 Score=16.35 Aligned_cols=29 Identities=7% Similarity=-0.077 Sum_probs=13.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999--999554089999999999
Q gi|254781086|r 29 AIIFGIFYWVT--HRFILPRLSSIMEVRRNL 57 (176)
Q Consensus 29 ~I~F~il~~il--~~~~~~pi~~~l~~R~~~ 57 (176)
.-.|-.++--+ ..-...-+.+++.+|...
T Consensus 42 ~~~~~~l~~~~~~~~~~~e~l~~~~~~r~~~ 72 (254)
T 3g9g_A 42 YEATETIRIRLSQVKLLNKDFYLLFKELANL 72 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999999999999999999999
No 13
>>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (D:1-107)
Probab=47.85 E-value=18 Score=16.23 Aligned_cols=40 Identities=3% Similarity=0.084 Sum_probs=23.4
Q ss_pred CCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 346899885988--7688999999999999999999955408
Q gi|254781086|r 8 DFSSRFPPFDTS--TFLSQFFWLAIIFGIFYWVTHRFILPRL 47 (176)
Q Consensus 8 ~~~~gmpqld~~--~f~~q~fw~~I~F~il~~il~~~~~~pi 47 (176)
++..-|+.-.++ +-+.-+|+++..=++++++++.|++||+
T Consensus 66 ~t~pe~~~~~gewk~v~g~v~~~i~~s~~lf~~~r~~~~pp~ 107 (107)
T 1v54_D 66 ESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPI 107 (107)
T ss_dssp SCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 644546489996456899999999999999999999707999
No 14
>>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} (A:1-126)
Probab=45.56 E-value=20 Score=16.01 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99885988768899999999999999999995540899999
Q gi|254781086|r 12 RFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIME 52 (176)
Q Consensus 12 gmpqld~~~f~~q~fw~~I~F~il~~il~~~~~~pi~~~l~ 52 (176)
|-+.++.-.|++- +|+|+|.-+++...+.+|+.+.-.
T Consensus 86 ~~~~i~yG~fl~a----iI~FlIia~viyF~ivk~~nk~~k 122 (126)
T 2oar_A 86 GGQTIDLNVLLSA----AINFFLIAFAVYFLVVLPYNTLRK 122 (126)
T ss_dssp SCEEECHHHHHHH----HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCEEEECHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8705750188999----999999999999999999998732
No 15
>>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, coiled coil; 2.40A {Homo sapiens} (X:1-211,X:571-644)
Probab=37.03 E-value=16 Score=16.60 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=14.4
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 4689988598876889999
Q gi|254781086|r 9 FSSRFPPFDTSTFLSQFFW 27 (176)
Q Consensus 9 ~~~gmpqld~~~f~~q~fw 27 (176)
.++|+|-||.-+|...+||
T Consensus 68 ~~~gIPfLdy~~Y~~rvlF 86 (285)
T 3hm6_X 68 LGSGIPFLDYKVYAERIFF 86 (285)
T ss_dssp ----CCBCCHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHCC
T ss_conf 4789886566777762024
No 16
>>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle state; HET: BOG RET; 2.20A {Natronomonas pharaonis} (B:)
Probab=32.86 E-value=27 Score=15.18 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf 999999955408999999999999999999--9999999999999999
Q gi|254781086|r 36 YWVTHRFILPRLSSIMEVRRNLISSDQEKM--DSAKREVESMISSYEE 81 (176)
Q Consensus 36 ~~il~~~~~~pi~~~l~~R~~~I~~~l~~A--~~~~~eae~~~~~~e~ 81 (176)
.|++.+.+..||..+.+.=+.--.++++.- ....+|...+...++.
T Consensus 76 ~~~~~r~i~~Pl~~l~~~~~~i~~gd~~~~~~~~~~dEig~L~~~~n~ 123 (163)
T 2f95_B 76 AATLGGDTAASLSTLAAKASRMGDGDLDVELETRREDEIGDLYAAFDE 123 (163)
T ss_dssp C-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999998874122333467778679999999999
No 17
>>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* (A:29-43,A:130-144,A:204-235)
Probab=32.17 E-value=24 Score=15.48 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7688999999999999999999955408
Q gi|254781086|r 20 TFLSQFFWLAIIFGIFYWVTHRFILPRL 47 (176)
Q Consensus 20 ~f~~q~fw~~I~F~il~~il~~~~~~pi 47 (176)
+-.+...|+.-+++|||-+++-++.|.+
T Consensus 20 tpmslaywfmdsylifynlikpylipqm 47 (62)
T 3c0w_A 20 TPMSLAYWFMDSYLIFYNLIKPYLIPQM 47 (62)
T ss_dssp CHHHHHHHHHHGHHHHHHHHGGGCCGGG
T ss_pred CHHHHHHHEECHHHHHHHHHHHHCCHHH
T ss_conf 8998887464678999999664076344
No 18
>>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans} (G:)
Probab=31.14 E-value=18 Score=16.28 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=12.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4689988598876889999999999
Q gi|254781086|r 9 FSSRFPPFDTSTFLSQFFWLAIIFG 33 (176)
Q Consensus 9 ~~~gmpqld~~~f~~q~fw~~I~F~ 33 (176)
..+|||+|.......+=.|-++.|+
T Consensus 58 g~~~Mp~~~~~~lt~~ei~~i~ayi 82 (87)
T 2zon_G 58 GKGAMPPRGGTAADEATLRAAVAYM 82 (87)
T ss_dssp CBTTBCGGGGCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 4468998667889999999999999
No 19
>>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} (C:)
Probab=24.48 E-value=39 Score=14.14 Aligned_cols=19 Identities=5% Similarity=-0.081 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCCCHHHHH
Q ss_conf 6453346899885988768
Q gi|254781086|r 4 SSSSDFSSRFPPFDTSTFL 22 (176)
Q Consensus 4 ~~~~~~~~gmpqld~~~f~ 22 (176)
+|+.....|-|.|....|.
T Consensus 17 ~CHg~~g~~~P~l~~~~~~ 35 (80)
T 1wve_C 17 HCHKPEVGVGPVLEGRGLP 35 (80)
T ss_dssp HHHSTTTCSSCCCTTSCCC
T ss_pred HHHCCCCCCCHHCCCCCHH
T ss_conf 8700557530112354225
No 20
>>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle state, membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} (B:)
Probab=22.77 E-value=47 Score=13.66 Aligned_cols=27 Identities=11% Similarity=-0.069 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999955408999999999999999
Q gi|254781086|r 36 YWVTHRFILPRLSSIMEVRRNLISSDQ 62 (176)
Q Consensus 36 ~~il~~~~~~pi~~~l~~R~~~I~~~l 62 (176)
.+++.+.+..||.++.+.=+.-=++++
T Consensus 78 ~~~~~~~i~~PI~~l~~~~~~i~~G~~ 104 (122)
T 2f93_B 78 AATLGGDTAASLSTLAAKASRMGDGDL 104 (122)
T ss_dssp C--------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 732032045899999999999867998
No 21
>>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} (A:)
Probab=21.06 E-value=51 Score=13.44 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999
Q gi|254781086|r 58 ISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDL 116 (176)
Q Consensus 58 I~~~l~~A~~~~~eae~~~~~~e~~l~eak~ea~~ii~~a~~~a~~~~e~~~~~a~~ei 116 (176)
+...+...+......+.....++..+...+..+...............-......+..+
T Consensus 12 ~~~~i~~l~~~~~~L~~~i~~le~~~~~~~~~~k~~~k~~~k~~A~~~lk~~k~~e~~~ 70 (218)
T 3frt_A 12 VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAV 70 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999988087999999999999999999
Done!