RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62] (176 letters) >gnl|CDD|169692 PRK09174, PRK09174, F0F1 ATP synthase subunit B'; Validated. Length = 204 Score = 120 bits (302), Expect = 2e-28 Identities = 58/151 (38%), Positives = 84/151 (55%), Gaps = 1/151 (0%) Query: 13 FPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREV 72 FPPFD++ + SQ WLAI FG+FY R ILPR+ I+E RR+ I+ D ++ K+E Sbjct: 44 FPPFDSTHYASQLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEA 103 Query: 73 ESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQK 132 ++ +++YE+ LA ARA A I AA+ E +R E L KL A+ I ++ Sbjct: 104 DAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKA 163 Query: 133 KASQEVYSIVGEVTKDLVRKL-GFSVSDADV 162 KA +V SI E +V +L G + A V Sbjct: 164 KAMADVGSIAEETAAAIVEQLIGGTADKASV 194 >gnl|CDD|184061 PRK13454, PRK13454, F0F1 ATP synthase subunit B'; Provisional. Length = 181 Score = 72.9 bits (179), Expect = 4e-14 Identities = 40/163 (24%), Positives = 78/163 (47%) Query: 10 SSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAK 69 + P D STF +Q FWL + Y+V R LPR+ +++ R+ I++D + K Sbjct: 19 APGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELK 78 Query: 70 REVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDD 129 ++ +Y ++LA ARA A+ I+ + A + L+ + ++ K + ++ I + Sbjct: 79 QKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAE 138 Query: 130 MQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRDG 172 ++ A + V + + + LV LG A V + ++ G Sbjct: 139 IRAGALESVEEVAKDTAEALVAALGGKADAAAVDAAVAQRMKG 181 >gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated. Length = 156 Score = 67.5 bits (166), Expect = 2e-12 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 1/145 (0%) Query: 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLA 84 I F I W +F+ P + +E R+ I+ + AK+E+E + YE LA Sbjct: 7 LIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLA 66 Query: 85 IARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGE 144 ARA A EII++ A Q +E + E + + AQ EI+ +K+A +E+ V + Sbjct: 67 EARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVAD 126 Query: 145 VTKDLVRK-LGFSVSDADVQKILDR 168 + K LG + A ++D+ Sbjct: 127 LAVAGAEKILGRELDAAAQSDLIDK 151 >gnl|CDD|180627 PRK06569, PRK06569, F0F1 ATP synthase subunit B'; Validated. Length = 155 Score = 56.0 bits (135), Expect = 5e-09 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Query: 14 PPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVE 73 P FD +T+ SQ FWL + FG+ Y ++FI P+ I R+ I + + D+ EVE Sbjct: 2 PQFDIATYYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVE 61 Query: 74 SMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNE-IDDMQK 132 + Y E I + + + ID++ +LE + + +K+L L N+ N+ I+D+ Sbjct: 62 KLNKYYNE--EIDKTNTE--IDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINL 117 Query: 133 KASQ 136 A Q Sbjct: 118 AAKQ 121 >gnl|CDD|172947 PRK14472, PRK14472, F0F1 ATP synthase subunit B; Provisional. Length = 175 Score = 40.9 bits (96), Expect = 2e-04 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 26 FWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAI 85 FW A+ F I + + + S +E R I S ++ SAK E E+++ E LA Sbjct: 22 FWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAK 81 Query: 86 ARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHK---LSNAQNEIDDMQKKASQEVYSIV 142 A A A +II + AE+ + E+ EK +++A+ EI+ +++A + + V Sbjct: 82 ADAEADKIIREGKEYAEK---LRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEV 138 Query: 143 GEVTKDLVRKLGFSVSDADVQK 164 ++ K+ + DAD QK Sbjct: 139 ADLAVKGAEKIIRTSLDADKQK 160 >gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase. Length = 147 Score = 38.2 bits (89), Expect = 0.001 Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 1/141 (0%) Query: 29 AIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARA 88 I F + W +++ P L+ +E R+ I+ + AK+E + L A+ Sbjct: 2 LISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKD 61 Query: 89 HAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKD 148 A+EII+ + LE + ++ + A+ EI+ +++A +E+ V +++ Sbjct: 62 EAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVL 121 Query: 149 LVRK-LGFSVSDADVQKILDR 168 K + ++ + ++D+ Sbjct: 122 GAEKIIERNIDKQAQKDLIDK 142 >gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed. Length = 782 Score = 35.6 bits (83), Expect = 0.007 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 9/92 (9%) Query: 56 NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKD 115 N+I ++ + K ++ +I+S EE A+E + L + E +++ Sbjct: 502 NIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEA---------EALLKEAEKLKEE 552 Query: 116 LLHKLSNAQNEIDDMQKKASQEVYSIVGEVTK 147 L K Q E D + ++A +E + E K Sbjct: 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584 >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional. Length = 250 Score = 35.6 bits (82), Expect = 0.007 Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 14/131 (10%) Query: 30 IIFGIFYWVTHRFILPRLSSIMEVRRNLISS---DQEKMD-SAKREVES---MISSYEES 82 I F I ++ RF+ + +M+ R+ I++ D E+ A +E E S E+ Sbjct: 13 INFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQ 72 Query: 83 ----LAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEV 138 +A A+ A E ++ A +++ R+ + + L + Q +Q++ Q++ Sbjct: 73 RASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLERE---KQEFFKALQQQTGQQM 129 Query: 139 YSIVGEVTKDL 149 I+ DL Sbjct: 130 VKIIRAALADL 140 >gnl|CDD|184695 PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional. Length = 164 Score = 34.4 bits (79), Expect = 0.015 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 14/136 (10%) Query: 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLA 84 FFW I+F I + +F + ++ R + I + + A++E++++ + E L Sbjct: 11 FFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLK 70 Query: 85 IARAH-------AKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137 ARA A+EI +K++A A++ + + + + A+ I+ + A E Sbjct: 71 EARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQ-------AKASIESEKNAAMAE 123 Query: 138 VYSIVGEVTKDLVRKL 153 + + V ++ ++ K+ Sbjct: 124 IKNQVANLSVEIAEKV 139 >gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional. Length = 159 Score = 34.6 bits (80), Expect = 0.015 Identities = 22/117 (18%), Positives = 51/117 (43%) Query: 22 LSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEE 81 + I F I + F ++ ++++ R++ I + EK D +++ + E Sbjct: 5 IPTIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNER 64 Query: 82 SLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEV 138 L A+ K+I+++ + AE E + ++ + A+ E ++KA E+ Sbjct: 65 ELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEI 121 >gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase. Length = 246 Score = 33.5 bits (77), Expect = 0.032 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 26/150 (17%) Query: 15 PFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVES 74 D T ++Q I F I W+ RF+ + M+ R I+ + D+ KRE E Sbjct: 2 LIDWFTVIAQ----LINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQ 57 Query: 75 MISSYEESLAI---------------ARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHK 119 YEE A+A + ++D+ A++ E +E ++ Sbjct: 58 ERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRRE---- 113 Query: 120 LSNAQNEIDDMQKKASQEVYSIVGEVTKDL 149 D+++++ EV++I +V DL Sbjct: 114 ---QAALSDELRRRTGAEVFAIARKVLTDL 140 >gnl|CDD|181441 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated. Length = 167 Score = 32.7 bits (75), Expect = 0.060 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 27/165 (16%) Query: 17 DTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSD----QEKMDSAKREV 72 +T I F IF + F L + + R N IS QEK+ +K + Sbjct: 17 LGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKK 76 Query: 73 ESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQK 132 E + EE AKE + +V A++ + EK +++I+++ K Sbjct: 77 EDALKKLEE--------AKEKAELIVETAKKEAYILTQKIEKQ-------TKDDIENLIK 121 Query: 133 --KASQE------VYSIVGEVTKDLVRKLGFSVSDADVQKILDRK 169 + E +V EV +L S++ + IL +K Sbjct: 122 SFEELMEFEVRKMEREVVEEVLNELFESKKVSLNQQEYVNILLKK 166 Score = 26.1 bits (58), Expect = 5.0 Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 7/65 (10%) Query: 61 DQEKMDSAKREVESMISSYEESL-----AIARAHAKEIIDKVVAAAEQNLEFQREVFEKD 115 Q+ K ++E++I S+EE + + R +E+++++ + + ++ + Sbjct: 105 TQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLNELF--ESKKVSLNQQEYVNI 162 Query: 116 LLHKL 120 LL K+ Sbjct: 163 LLKKV 167 >gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated. Length = 141 Score = 32.4 bits (74), Expect = 0.070 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 4/107 (3%) Query: 29 AIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARA 88 ++F + + + ++ L M+ R I +D EK+ + +V + E L AR Sbjct: 14 FVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNARE 73 Query: 89 HAKEIIDKVVAAA----EQNLEFQREVFEKDLLHKLSNAQNEIDDMQ 131 A +I K +A A E+ +E ++ E N+ +++ Sbjct: 74 EANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELK 120 >gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated. Length = 174 Score = 32.2 bits (74), Expect = 0.077 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 20/137 (14%) Query: 2 ASSSSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSD 61 A+ + F +T+ LAI+ G+ Y+ F L I+E RR I Sbjct: 8 ATEAEGGFGLNLNLLETN-----LINLAIVIGLLYYFGRGF----LGKILEERREAILQA 58 Query: 62 QEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLS 121 ++ + R+ ++ ++ LA A+ A +++ A A+ E R EK Sbjct: 59 LKEAEERLRQAAQALAEAQQKLAQAQQEA----ERIRADAKARAEAIRAEIEK------- 107 Query: 122 NAQNEIDDMQKKASQEV 138 A ++ +++ A+ ++ Sbjct: 108 QAIEDMARLKQTAAADL 124 >gnl|CDD|179777 PRK04194, PRK04194, hypothetical protein; Provisional. Length = 392 Score = 31.3 bits (72), Expect = 0.15 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 12/88 (13%) Query: 29 AIIF------GIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEES 82 I+F G+ + R++L R +E + D + ++ YE+ Sbjct: 308 RILFRETGTLGVREYPVERWVLERRIETVETPYGEVRVKVAYRDG---GIINVKPEYEDC 364 Query: 83 LAIARAH---AKEIIDKVVAAAEQNLEF 107 IAR +E+ AAE+ F Sbjct: 365 KRIARETGIPLREVYRAAEEAAEEFYAF 392 >gnl|CDD|139585 PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional. Length = 173 Score = 31.1 bits (70), Expect = 0.15 Identities = 15/70 (21%), Positives = 31/70 (44%) Query: 27 WLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIA 86 W + F + V +F + ++ R + + +D K + E E+++ YE L A Sbjct: 21 WTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSA 80 Query: 87 RAHAKEIIDK 96 + A I+ + Sbjct: 81 KDEANAIVAE 90 >gnl|CDD|179887 PRK04863, mukB, cell division protein MukB; Provisional. Length = 1486 Score = 30.7 bits (70), Expect = 0.20 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 45 PRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQN 104 L+ + R QEK++ + ++E + EE A E ++ A AE Sbjct: 335 DHLNLVQTALRQ-----QEKIERYQADLEELEERLEEQ-NEVVEEADEQQEENEARAEAA 388 Query: 105 LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQ 136 + EV +L +L++ Q +D Q +A Q Sbjct: 389 ---EEEV--DELKSQLADYQQALDVQQTRAIQ 415 >gnl|CDD|168615 PRK06568, PRK06568, F0F1 ATP synthase subunit B; Validated. Length = 154 Score = 30.6 bits (69), Expect = 0.23 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 6/121 (4%) Query: 21 FLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYE 80 FL + FWLA+ F IF ++ +R P +I+ I QEK+ A++ E +E Sbjct: 3 FLDESFWLAVSFVIFVYLIYR---PAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFE 59 Query: 81 ESLAIAR---AHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137 ++ A + ++I++ ++ ++ + + E+ L HK S+A I + + AS+E Sbjct: 60 QTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKE 119 Query: 138 V 138 + Sbjct: 120 L 120 >gnl|CDD|147793 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846). This family consists of several of unknown function from a variety of eukaryotic organisms. Length = 140 Score = 30.3 bits (69), Expect = 0.26 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 9 FSSRFPPFDTSTFLSQFFWLAIIFGIFYWV 38 F SR PPF + S FWLA+ +WV Sbjct: 76 FESRDPPFVPNAIDSNLFWLALYVAPLFWV 105 >gnl|CDD|179944 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional. Length = 233 Score = 30.1 bits (69), Expect = 0.34 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%) Query: 80 EESLAIARAHAKE---IIDKVVAAAEQNLEFQREVF 112 EE++ +AR HA E ID AE+ F Sbjct: 80 EENIEVARLHALESGLKIDYRQTTAEELAAEHPGQF 115 >gnl|CDD|179408 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional. Length = 188 Score = 30.0 bits (68), Expect = 0.39 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 20/104 (19%) Query: 80 EESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLS-----------NAQNEI- 127 EE +A A A A+EI++ A AE+ +E RE +LS NA+ E+ Sbjct: 30 EEIIAEAEADAEEILEDREAEAEREIEQLRE-------QELSSAKLEAKRERLNARKEVL 82 Query: 128 DDMQKKASQEVYSIVGEVTKDLVRKLGFSVSDADVQKILDRKRD 171 +D++ + E+ S+ G+ ++L + L +DAD ++ RK D Sbjct: 83 EDVRNQVEDEIASLDGDKREELTKSL-LDAADADGVRVYSRKDD 125 >gnl|CDD|132225 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. Length = 341 Score = 29.4 bits (67), Expect = 0.46 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 44 LPRLSSIMEVRRNLISSDQEKMDSAKREVESMIS-SYEESLAIARAHAKEIIDKVVAAAE 102 + RL +E R+ L +QE ++ + E E+ ++ + E+LA+ +I D V A Sbjct: 275 ILRLRKYLE-RKGLWDEEQE--EALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAELP 331 Query: 103 QNLEFQREVF 112 LE QR Sbjct: 332 PELEEQRAEL 341 >gnl|CDD|183147 PRK11465, PRK11465, putative mechanosensitive channel protein; Provisional. Length = 741 Score = 29.4 bits (66), Expect = 0.47 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Query: 15 PFDTSTF---LSQFFWLAIIFGIFYWVTHRFILP 45 PF+ TF L+ F LA++ FYW+ LP Sbjct: 128 PFNPQTFSNALTHFLMLAVLVFGFYWLIRLCALP 161 >gnl|CDD|168917 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated. Length = 140 Score = 29.2 bits (66), Expect = 0.59 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Query: 55 RNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEK 114 R + +E++ E E + + YE+ LA AR A+ +I + A A++ + Sbjct: 42 RTNRAEAKERLA----EAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQA 97 Query: 115 DLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKDLVRKL 153 + A+ EI+ ++ A ++ V +++ ++ KL Sbjct: 98 EAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKL 136 >gnl|CDD|163537 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes. Length = 255 Score = 29.0 bits (65), Expect = 0.61 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%) Query: 41 RFILPRLSSIMEVRRNLISSDQ-EKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVA 99 I S I R +I Q + ++E+ +E+ L A A A +II++ Sbjct: 3 NIIKSTKSVIPAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQ--- 59 Query: 100 AAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVY 139 AE RE E+ + + + E + + ++A QE Y Sbjct: 60 -AEAQAAAIREQIEQ----ERAQWEEERERLIQEAKQEGY 94 >gnl|CDD|148840 pfam07464, ApoLp-III, Apolipophorin-III precursor (apoLp-III). This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage. Length = 166 Score = 28.7 bits (64), Expect = 0.78 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 14/102 (13%) Query: 62 QEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLS 121 +E D ++++++ +S +E+L A AKE + QN+E E K Sbjct: 44 KEGSDKVLQQLKALSASLQEALKDANGKAKE----ALEQLRQNIEETAEELRKAHPEVEQ 99 Query: 122 NAQNEIDDMQ----------KKASQEVYSIVGEVTKDLVRKL 153 AQ D +Q +K ++EV S V + L K+ Sbjct: 100 QAQELRDKLQAAVQSTVQESQKLAKEVASNVEGTNEKLAPKI 141 >gnl|CDD|150104 pfam09325, Vps5, Vps5 C terminal like. Vps5 is a sorting nexin that functions in membrane trafficking. This is the C terminal dimerization domain. Length = 236 Score = 28.0 bits (63), Expect = 1.4 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%) Query: 46 RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARA--HAKEIIDKVVAAAEQ 103 LS + EV + + + + I Y + +A + + + AEQ Sbjct: 83 ALSQLAEVEERIKELLERQALQDVLTLGETIDEYLRLIGSVKAVFNQRVKAWQQWQNAEQ 142 Query: 104 NLEFQREVFEKDLL------HKLSNAQNEIDDMQKKASQ 136 +L +R K KL A+ E+D+ ++K Q Sbjct: 143 DLSKKRAQLAKLKGAGKSRQDKLQQAKKEVDEAERKVQQ 181 >gnl|CDD|152163 pfam11727, ISG65-75, Invariant surface glycoprotein. This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75. that are found in the mammalian stage of the parasitic protozoan. the sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. they are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite. Length = 289 Score = 27.9 bits (62), Expect = 1.6 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 56 NLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKD 115 L SD++K+ + + I A A+++ ++V AA + L + + + Sbjct: 95 KLSDSDKKKIKEICEKAKDKIDEALPEAKKAGREAEKLAEEVKEAAAKALGWALDEGTSN 154 Query: 116 --LLHKLSN 122 L K+ N Sbjct: 155 STGLSKVLN 163 >gnl|CDD|151530 pfam11085, YqhR, Conserved membrane protein YqhR. This family is conserved in the Bacillaceae family of the Firmicutes. The function is not known. Length = 174 Score = 27.7 bits (62), Expect = 1.7 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Query: 20 TFLSQFF--WLAIIFGIFYWVTHRFIL----PRLSSIMEVRRNLI 58 L + W I++G+ W+ F+L P + + E+ +N I Sbjct: 91 ALLKKVKSMWPGILYGLALWLLVFFVLNPIFPDVKPVTELDKNTI 135 >gnl|CDD|179204 PRK01005, PRK01005, V-type ATP synthase subunit E; Provisional. Length = 207 Score = 27.4 bits (61), Expect = 1.9 Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 63 EKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDL 116 E + A+ E +++ + +E A A+E +K++ +AE+ + + + E L Sbjct: 20 ETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESAL 73 >gnl|CDD|184510 PRK14105, PRK14105, selenophosphate synthetase; Provisional. Length = 345 Score = 27.4 bits (61), Expect = 2.1 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 47 LSSIMEVRRNLISSDQEKMDSA-KREVESMISSYEESLAIARAHAKEIIDKVVAA 100 LS + E +LI +E+ + + +E M +S +L R +E+ +K+ A Sbjct: 185 LSRVPEEFEDLIDITKEEKEYIINKAIELMTTSNRYALLALREAEEEVGEKIANA 239 >gnl|CDD|162545 TIGR01818, ntrC, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. Length = 463 Score = 27.4 bits (61), Expect = 2.3 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Query: 96 KVVAAAEQNLE--FQREVFEKDLLHKL 120 ++VAA QNLE ++ F +DL H+L Sbjct: 271 RIVAATHQNLEALVRQGKFREDLFHRL 297 >gnl|CDD|169751 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated. Length = 288 Score = 27.1 bits (60), Expect = 2.6 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 24/78 (30%) Query: 57 LISSDQEKMDSAKREVESMIS--------------------SYEESLAIARAHAKEIIDK 96 L+ QE+++SA++E+ S+ SY L A A A D Sbjct: 29 LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADA----DL 84 Query: 97 VVAAAEQNLEFQREVFEK 114 V+ A + LE ++ VFE Sbjct: 85 VIEAVPEKLELKKAVFET 102 >gnl|CDD|184060 PRK13453, PRK13453, F0F1 ATP synthase subunit B; Provisional. Length = 173 Score = 26.8 bits (59), Expect = 3.2 Identities = 28/141 (19%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Query: 30 IIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAH 89 + F + + +F L +M+ R I+ D + + AK + + ++ L + Sbjct: 26 LTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEE 85 Query: 90 AKEII-DKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEVTKD 148 ++I+ D V A +Q + E + + AQ+EI+ +++A ++ + V E++ Sbjct: 86 VQKILEDAKVQARQQQEQIIHEANVR-ANGMIETAQSEINSQKERAIADINNQVSELSVL 144 Query: 149 LVRK-LGFSVSDADVQKILDR 168 + K L +S+ D + ++D+ Sbjct: 145 IASKVLRKEISEQDQKALVDK 165 >gnl|CDD|117334 pfam08764, Coagulase, Staphylococcus aureus coagulase. Staphylococcus aureus secretes a cofactor called coagulase. Coagulase is an extracellular protein that forms a complex with human prothrombin, and activates it without the usual proteolytic cleavages. The resulting complex directly initiates blood clotting. Length = 282 Score = 26.7 bits (59), Expect = 3.3 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Query: 106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEV 145 +F++EV K++ K S+ + ++ +KKA+ EVY +V E+ Sbjct: 129 DFKKEV--KEIQSKNSDLKPYSEEEEKKATDEVYDLVSEI 166 >gnl|CDD|129194 TIGR00086, smpB, SsrA-binding protein. This model describes the SsrA-binding protein, also called tmRNA binding protein, small protein B, and SmpB. The small, stable RNA SsrA (also called tmRNA or 10Sa RNA) recognizes stalled ribosomes such as occur during translation from message that lacks a stop codon. It becomes charged with Ala like a tRNA, then acts as mRNA to resume translation started with the defective mRNA. The short C-terminal peptide tag added by the SsrA system marks the abortively translated protein for degradation. SmpB binds SsrA after its aminoacylation but before the coupling of the Ala to the nascent polypeptide chain and is an essential part of the SsrA peptide tagging system. SmpB has been associated with the survival of bacterial pathogens in conditions of stress. It is universal in the first 100 sequenced bacterial genomes. Length = 144 Score = 26.8 bits (60), Expect = 3.5 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 5/29 (17%) Query: 114 KDLLHKLSNAQNEIDDMQKKASQEVYSIV 142 K LLHK EID +Q K ++ ++V Sbjct: 76 KLLLHK-----KEIDKLQGKVKEKGLTLV 99 >gnl|CDD|180481 PRK06231, PRK06231, F0F1 ATP synthase subunit B; Validated. Length = 205 Score = 26.7 bits (59), Expect = 3.7 Identities = 36/174 (20%), Positives = 77/174 (44%), Gaps = 28/174 (16%) Query: 5 SSSDFSSRFPPFDTSTFLSQFFWLAIIFGIFYWV----THRFILPRLSSIMEVRRNLISS 60 S S + FP F F++ +I+ + ++ T RF + R+ LI + Sbjct: 37 SKSIINELFPNF--WVFIAHLIAFSILLLLGIFLFWKPTQRF--------LNKRKELIEA 86 Query: 61 DQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKL 120 + + + K++ + ++ + ++ A A AKEIID+ A + L+ + EK+ Sbjct: 87 EINQANELKQQAQQLLENAKQRHENALAQAKEIIDQ---ANYEALQL-KSELEKE----- 137 Query: 121 SNAQNEIDDMQKKASQEVY---SIVGEVTKDLVRKLGFSVSDADVQKILDRKRD 171 A + + + +A QE+ + E + +L ++ ++K +DR+ D Sbjct: 138 --ANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKKVDREDD 189 >gnl|CDD|148047 pfam06207, DUF1002, Protein of unknown function (DUF1002). This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria. Length = 222 Score = 26.4 bits (59), Expect = 4.0 Identities = 8/24 (33%), Positives = 13/24 (54%) Query: 125 NEIDDMQKKASQEVYSIVGEVTKD 148 +ID+ QK+A+ E E+ D Sbjct: 122 EKIDEEQKEAANEELVTTSELNGD 145 >gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional. Length = 164 Score = 26.4 bits (58), Expect = 4.3 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%) Query: 52 EVRRNLISSDQE---KMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQ 108 +VR L ++ ++ ++ A++E +++ +E ARA EII + AE+ E Sbjct: 53 KVREQLANAKRDYEAELAKARQEAAKIVAQAQER---ARAQEAEIIAQARREAEKIKEEA 109 Query: 109 REVFEKDLLHKLSNAQNEIDDM 130 R E++ LS +++I D+ Sbjct: 110 RAQAEQERQRMLSELKSQIADL 131 >gnl|CDD|184019 PRK13387, PRK13387, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional. Length = 317 Score = 26.3 bits (58), Expect = 4.3 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%) Query: 21 FLSQFFWLAIIF--GIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDS 67 F + + +A+I G L ++ + NL S +E D Sbjct: 242 FYASYLAIAVIVLMGYISPWA----LLSFLTLRKPISNLQSFQKEAKDP 286 >gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional. Length = 137 Score = 26.2 bits (57), Expect = 4.9 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 3 SSSSSDFSSRFPPFDT 18 SS S +F+ FPPF+T Sbjct: 30 SSQSIEFAGDFPPFET 45 >gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes. Length = 85 Score = 26.0 bits (57), Expect = 5.2 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 67 SAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQ----NLEFQREVFEKDLLHKLSN 122 A+ +E ++ +A AR A+E++++ A + ++ E EK+ Sbjct: 10 DAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREE 69 Query: 123 AQNEIDDMQKKA 134 + EI+ M+ KA Sbjct: 70 GEKEIEAMKSKA 81 >gnl|CDD|181438 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated. Length = 613 Score = 26.2 bits (58), Expect = 5.3 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Query: 100 AAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQEVYSIVGEV 145 A +Q L + E L + + + + +D +QKK ++E+ V E+ Sbjct: 132 AQKQALAQKTET----LTNNIKDTRERLDTLQKKVNEELKVTVDEI 173 >gnl|CDD|163430 TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader. Length = 302 Score = 26.0 bits (58), Expect = 5.4 Identities = 8/21 (38%), Positives = 11/21 (52%) Query: 19 STFLSQFFWLAIIFGIFYWVT 39 + + QF W+ IFG F T Sbjct: 120 AALIEQFHWVLYIFGAFLLYT 140 >gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. Length = 1164 Score = 26.2 bits (58), Expect = 5.4 Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 39 THRFILPRLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVV 98 I RL I E + N ++ ++E ++ +E++ +E + + E ++ Sbjct: 806 EVSRIEARLREI-EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK-SIEKEIENLNGKK 863 Query: 99 AAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKASQ 136 E+ LE + E +DL +L + + E D+++ + + Sbjct: 864 EELEEELE-ELEAALRDLESRLGDLKKERDELEAQLRE 900 >gnl|CDD|181293 PRK08210, PRK08210, aspartate kinase I; Reviewed. Length = 403 Score = 26.0 bits (58), Expect = 5.9 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Query: 76 ISSYEESLAIARAHAKEIIDKVVAAAEQNLEFQREVFEKDLLHKLSNAQNEIDDMQKKAS 135 EE L AH + V A E + Q+EVF+ L+ A +D + + Sbjct: 254 GIDVEERLITGIAHVSNVTQIKVKAKENAYDLQQEVFK-----ALAEAGISVDFINIFPT 308 Query: 136 QEVYSIVGEVT---KDLVRKLGFSVS 158 + V+++ E + K+++ LG S Sbjct: 309 EVVFTVSDEDSEKAKEILENLGLKPS 334 >gnl|CDD|148774 pfam07355, GRDB, Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes. Length = 349 Score = 25.8 bits (57), Expect = 6.0 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 51 MEVRRNLISSDQ---EKMDSAKREVESMISSYEESLAIA 86 EV +I D E ++ A E+ M+ + L IA Sbjct: 48 AEVVHTVICGDSYFNENIEEAVAEILEMLKEEKPDLFIA 86 >gnl|CDD|161672 TIGR00033, aroC, chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation. Length = 351 Score = 25.8 bits (57), Expect = 6.2 Identities = 8/19 (42%), Positives = 13/19 (68%) Query: 154 GFSVSDADVQKILDRKRDG 172 G +++ D+Q LDR+R G Sbjct: 24 GLPLTEEDIQPDLDRRRPG 42 >gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional. Length = 453 Score = 25.6 bits (56), Expect = 6.6 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 19/68 (27%) Query: 8 DFSSRF----PPFDTSTF---------------LSQFFWLAIIFGIFYWVTHRFILPRLS 48 DF++ F F+T L ++ + G+FY++ + + Sbjct: 9 DFTNTFMKNESSFNTFRVDNKVKRWKIQKLFQILYVTVFIVLAGGLFYYIFENVVFQKNR 68 Query: 49 SIMEVRRN 56 I E+ + Sbjct: 69 KINEIIKT 76 >gnl|CDD|147857 pfam05933, Fun_ATP-synt_8, Fungal ATP synthase protein 8 (A6L). This family consists of fungus specific ATP synthase protein 8 (EC:3.6.3.14). The family may be related to the ATP synthase protein 8 found in other eukaryotes pfam00895. Length = 47 Score = 25.7 bits (57), Expect = 7.2 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 21 FLSQFFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISS 60 F++Q + I I ++ ++ILPR+ + V R IS Sbjct: 9 FINQIVFTFAIISILLYLFSKYILPRIVRLY-VSRLFISK 47 >gnl|CDD|150409 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells. Length = 711 Score = 25.6 bits (56), Expect = 7.5 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 105 LEFQREVFEKDLLHKLSNAQNEIDDMQKKASQE 137 LE Q E+ K L +LSN Q E + + + + Sbjct: 37 LELQAEL--KQLRAELSNVQAENERLSSLSQEL 67 >gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated. Length = 460 Score = 25.5 bits (57), Expect = 7.6 Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 2/27 (7%) Query: 152 KLGFSVSDADV--QKILDRKRDGIDAF 176 + G + +K++ R R D F Sbjct: 67 EFGIHADGPKIDFKKVMARVRRERDRF 93 >gnl|CDD|184661 PRK14405, PRK14405, membrane protein; Provisional. Length = 202 Score = 25.5 bits (56), Expect = 8.2 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 10/45 (22%) Query: 25 FFWLAIIFGIFYWVTHRFILPRLSSIMEVRRNLISSDQEKMDSAK 69 + WL++I IF + HR ++I L+S + K+ K Sbjct: 165 YIWLSLIIAIFAFWRHR------TNI----VRLLSGTENKLGKKK 199 >gnl|CDD|118258 pfam09726, Macoilin, Transmembrane protein. This entry is a highly conserved protein present in eukaryotes. Length = 680 Score = 25.3 bits (55), Expect = 9.3 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 9/91 (9%) Query: 46 RLSSIMEVRRNLISSDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDKVVAAAEQNL 105 RL S + R N E+ K E E+ + A A A +E + + A+Q+L Sbjct: 484 RLKSEADSRVNAEKQLAEEKKRKKEEEETA----ARAAAQAAASREECAE-SLKQAKQDL 538 Query: 106 EFQREVFEKDLLHKLSNAQNEIDDMQKKASQ 136 E + K L H L + E ++K+A + Sbjct: 539 EMEI----KKLEHDLKLKEEECRMLEKEAQE 565 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.132 0.359 Gapped Lambda K H 0.267 0.0640 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,761,169 Number of extensions: 166459 Number of successful extensions: 784 Number of sequences better than 10.0: 1 Number of HSP's gapped: 768 Number of HSP's successfully gapped: 123 Length of query: 176 Length of database: 5,994,473 Length adjustment: 87 Effective length of query: 89 Effective length of database: 4,114,577 Effective search space: 366197353 Effective search space used: 366197353 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.8 bits)