HHsearch alignment for GI: 254781087 and conserved domain: CHL00061

>CHL00061 atpH ATP synthase CF0 C subunit.
Probab=99.90  E-value=6.7e-24  Score=140.21  Aligned_cols=74  Identities=24%  Similarity=0.279  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r   17 YYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV   90 (91)
Q Consensus        17 ~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa   90 (91)
T Consensus         3 ~iv~~~s~l~Agl~~glaaiG~giG~G~a~~~a~e~iaRqPea~g~i~~tm~ig~A~iEs~~Iy~lvialillFA   77 (81)
T CHL00061          3 PLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             399999999999999998313246587999999999874920102169999999999999999999999999953