HHsearch alignment for GI: 254781087 and conserved domain: TIGR03322
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.92 E-value=5.7e-25 Score=145.61 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23599999999999999-99874789999999999999823787898799999999999999999999999999970
Q gi|254781087|r 15 NGYYSLAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFV 90 (91)
Q Consensus 15 ~~~~a~aak~IGAGlA~-ig~~G~giGiG~if~~~i~~vaRNP~~~~~l~~~~ilG~Al~Ea~glfalviA~lllFa 90 (91)
T Consensus 2 ~~~~i~~~Sii~AGla~gigaiGpgiGeG~aa~~A~e~iaRqPea~~~I~~Tm~ig~A~~Es~aIY~lVValILlFa 78 (86)
T TIGR03322 2 SLTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 08899999999999999998305324587999999999874942002049999999999999999999999999985