RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781087|ref|YP_003065500.1| H+transporting two-sector
ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>gnl|CDD|38235 KOG3025, KOG3025, KOG3025, Mitochondrial F1F0-ATP synthase, subunit
           c/ATP9/proteolipid [Energy production and conversion].
          Length = 137

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 20/72 (27%), Positives = 38/72 (52%)

Query: 20  LAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLF 79
            AAK++  G A +G+      +  +F + + G  RNP       +  ++   ++E++GLF
Sbjct: 66  TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 125

Query: 80  LLLVVMLLLFVI 91
            L+V  L+LF +
Sbjct: 126 CLMVAFLILFAM 137


>gnl|CDD|164765 MTH00222, ATP9, ATP synthase F0 subunit 9; Provisional.
          Length = 77

 Score = 33.3 bits (76), Expect = 0.017
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 21 AAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFL 80
          AAK+V  G A +G       +  +F   + G  RNP       T  ++   I+E++GLF 
Sbjct: 7  AAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFC 66

Query: 81 LLVVMLLLF 89
          L++  L+LF
Sbjct: 67 LMMAFLILF 75


>gnl|CDD|110122 pfam01098, FTSW_RODA_SPOVE, Cell cycle protein.  This entry
           includes the following members; FtsW, RodA, SpoVE.
          Length = 356

 Score = 28.4 bits (64), Expect = 0.40
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 68  IFAVIAESLGLFLLLVVMLLLFVI 91
           IFAVI E LG    L+++ L F++
Sbjct: 255 IFAVIGEELGFIGALLLLALFFLL 278


>gnl|CDD|30981 COG0636, AtpE, F0F1-type ATP synthase, subunit
          c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy
          production and conversion].
          Length = 79

 Score = 28.3 bits (63), Expect = 0.55
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 11 FAAANGYYSLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFA 70
            AA    +L    +AVG+A LG     +    I    +    R P AA     ++ I  
Sbjct: 1  MTAAKKGLALIGAGLAVGLAALG---AGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGL 57

Query: 71 VIAESLGLFLLLVVMLLLFVI 91
           + E+LG++ L++ +LLLF  
Sbjct: 58 ALVEALGIYGLVIALLLLFAN 78


>gnl|CDD|144575 pfam01034, Syndecan, Syndecan domain.  Syndecans are transmembrane
           heparin sulfate proteoglycans which are implicated in
           the binding of extracellular matrix components and
           growth factors.
          Length = 207

 Score = 27.8 bits (62), Expect = 0.59
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 62  HKTEVLIFAVIAESL-G-LFLLLVVMLLLF 89
            + EVL  AVIA  + G LF + +VM L++
Sbjct: 148 ERKEVLA-AVIAGGVVGLLFAVFLVMFLVY 176


>gnl|CDD|35847 KOG0628, KOG0628, KOG0628, Aromatic-L-amino-acid/L-histidine
           decarboxylase [Amino acid transport and metabolism].
          Length = 511

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 9   ATFAAANGYYSLAAKYVAVGMACLG 33
           A F A N Y S+ A  ++ G+ C+G
Sbjct: 78  AYFPAGNSYPSILADMLSGGIGCVG 102


>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
           cancer resistance protein) [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 613

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 20/74 (27%), Positives = 37/74 (50%)

Query: 14  ANGYYSLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIA 73
           ++G Y L++ Y+A  +A L   LV   + +    ++ G              +L+ +++A
Sbjct: 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVA 483

Query: 74  ESLGLFLLLVVMLL 87
           ESLGLF+  +V  L
Sbjct: 484 ESLGLFISAIVPNL 497


>gnl|CDD|31115 COG0772, FtsW, Bacterial cell division membrane protein [Cell
           division and chromosome partitioning].
          Length = 381

 Score = 25.6 bits (56), Expect = 3.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 68  IFAVIAESLGLFLLLVVMLLLFVI 91
           IFAVI E  G    L ++ L F++
Sbjct: 273 IFAVIGEEFGFIGALFLLALFFLL 296


>gnl|CDD|143909 pfam00137, ATP-synt_C, ATP synthase subunit C. 
          Length = 66

 Score = 24.7 bits (55), Expect = 5.8
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 22 AKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFL 80
             +  G+A  L      + +       +    RNP        ++LI A +AE+L ++ 
Sbjct: 1  LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNP----ELFGKMLIGAALAEALAIYG 56

Query: 81 LLVVMLLLFV 90
          L++ +LLLF 
Sbjct: 57 LVIALLLLFA 66


>gnl|CDD|30292 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
           nomenclature); composed of cysteine peptidases (CPs)
           similar to papain, including the mammalian CPs
           (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
           is an endopeptidase with specific substrate preferences,
           primarily for bulky hydrophobic or aromatic residues at
           the S2 subsite, a hydrophobic pocket in papain that
           accommodates the P2 sidechain of the substrate (the
           second residue away from the scissile bond). Most
           members of the papain subfamily are endopeptidases. Some
           exceptions to this rule can be explained by specific
           details of the catalytic domains like the occluding loop
           in cathepsin B which confers an additional
           carboxydipeptidyl activity and the mini-chain of
           cathepsin H resulting in an N-terminal exopeptidase
           activity. Papain-like CPs have different functions in
           various organisms. Plant CPs are used to mobilize
           storage proteins in seeds. Parasitic CPs act
           extracellularly to help invade tissues and cells, to
           hatch or to evade the host immune system. Mammalian CPs
           are primarily lysosomal enzymes with the exception of
           cathepsin W, which is retained in the endoplasmic
           reticulum. They are responsible for protein degradation
           in the lysosome. Papain-like CPs are synthesized as
           inactive proenzymes with N-terminal propeptide regions,
           which are removed upon activation. In addition to its
           inhibitory role, the propeptide is required for proper
           folding of the newly synthesized enzyme and its
           stabilization in denaturing pH conditions. Residues
           within the propeptide region also play a role in the
           transport of the proenzyme to lysosomes or acidified
           vesicles. Also included in this subfamily are proteins
           classified as non-peptidase homologs, which lack
           peptidase activity or have missing active site
           residues..
          Length = 210

 Score = 24.8 bits (54), Expect = 5.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 37  VALAVSNIFTTYLSGAFRNPCAASA 61
           VA+  S+ F  Y  G +  PC ++ 
Sbjct: 132 VAIDASSSFQFYKGGIYSGPCCSNT 156


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.330    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0798    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 971,837
Number of extensions: 44190
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 50
Length of query: 91
Length of database: 6,263,737
Length adjustment: 60
Effective length of query: 31
Effective length of database: 4,967,197
Effective search space: 153983107
Effective search space used: 153983107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.3 bits)