RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781087|ref|YP_003065500.1| H+transporting two-sector
ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP
          synthase rotor, sodium-motive force, cell inner
          membrane, CF(0), membrane, transport; HET: F09; 2.35A
          {Ilyobacter tartaricus} PDB: 1yce_A* (A:)
          Length = 89

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 16/71 (22%), Positives = 31/71 (43%)

Query: 20 LAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLF 79
          LAA  V  G A +      +         +    R P A     + +++   +AES G++
Sbjct: 11 LAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIY 70

Query: 80 LLLVVMLLLFV 90
           L++ ++LL+ 
Sbjct: 71 SLVIALILLYA 81


>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen
          ION transport, hydrolase; NMR {Bacillus SP} (A:)
          Length = 72

 Score = 33.7 bits (78), Expect = 0.009
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 20 LAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGL 78
          ++   +A  +A  LG     +    I +  + G  R P      +T + I   + E+L +
Sbjct: 1  MSLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPI 60

Query: 79 FLLLVVMLLLF 89
            ++   + L 
Sbjct: 61 IGVVFSFIYLG 71


>2wie_A C15_RING, ATP synthase C chain; hydrolase, F1FO ATP
          synthase rotor, ION proton-translocation, ION
          transport, transmembrane; HET: FME CVM; 2.13A
          {Arthrospira platensis} PDB: 2w5j_A (A:)
          Length = 82

 Score = 30.7 bits (70), Expect = 0.068
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 20 LAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGL 78
           AA  +A  +A  +G     L         + G  R P A    +  +L+     E+L +
Sbjct: 7  TAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTI 66

Query: 79 FLLLVVMLLLFV 90
          + L+V ++LLF 
Sbjct: 67 YGLVVALVLLFA 78


>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION
          transport; NMR {Escherichia coli} (A:)
          Length = 79

 Score = 28.3 bits (64), Expect = 0.36
 Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 20 LAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGL 78
          +   Y+A  +   L     A+ +  +   +L GA R P      +T+  I   + +++ +
Sbjct: 6  MDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPM 65

Query: 79 FLLLVVMLLLFVI 91
            + + + ++F +
Sbjct: 66 IAVGLGLYVMFAV 78


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.330    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0770    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 573,828
Number of extensions: 18915
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 5
Length of query: 91
Length of database: 4,956,049
Length adjustment: 52
Effective length of query: 39
Effective length of database: 3,198,189
Effective search space: 124729371
Effective search space used: 124729371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.0 bits)