RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781087|ref|YP_003065500.1| H+transporting two-sector ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62] (91 letters) >2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus} Length = 72 Score = 42.4 bits (100), Expect = 3e-05 Identities = 20/69 (28%), Positives = 37/69 (53%) Query: 21 AAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFL 80 AAK++ G A +G+ + +F + + G RNP + ++ ++E++GLF Sbjct: 4 AAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFC 63 Query: 81 LLVVMLLLF 89 L+V L+LF Sbjct: 64 LMVAFLILF 72 >2xok_K ATP synthase subunit 9, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} PDB: 2wpd_J* Length = 76 Score = 41.9 bits (99), Expect = 4e-05 Identities = 22/72 (30%), Positives = 40/72 (55%) Query: 20 LAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLF 79 LAAKY+ G++ +G+ + ++ +F ++G RNP ++ ++E+ GLF Sbjct: 5 LAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLF 64 Query: 80 LLLVVMLLLFVI 91 L+V LLLF + Sbjct: 65 CLMVSFLLLFGV 76 >2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A* Length = 89 Score = 39.2 bits (92), Expect = 2e-04 Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 20 LAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLF 79 LAA V G A + + + R P A + +++ +AES G++ Sbjct: 11 LAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIY 70 Query: 80 LLLVVMLLLFV 90 L++ ++LL+ Sbjct: 71 SLVIALILLYA 81 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 33.4 bits (76), Expect = 0.014 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 28/75 (37%) Query: 35 GLVALA-------VSNI----FTTYLSGAFRNPCAASAHKTEVLIFAVIA-----ESLGL 78 G++ LA + +YL GA + H ++ IA ES Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGA-------TGHSQGLVTAVAIAETDSWES--- 291 Query: 79 F--LLLVVMLLLFVI 91 F + + +LF I Sbjct: 292 FFVSVRKAITVLFFI 306 >2wie_A C15_RING, ATP synthase C chain; hydrolase, F1FO ATP synthase rotor, ION proton-translocation, ION transport, transmembrane; HET: FME CVM; 2.13A {Arthrospira platensis} PDB: 2w5j_A Length = 82 Score = 31.8 bits (73), Expect = 0.040 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 20 LAAKYVAVGMA-CLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGL 78 AA +A +A +G L + G R P A + +L+ E+L + Sbjct: 7 TAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTI 66 Query: 79 FLLLVVMLLLFV 90 + L+V ++LLF Sbjct: 67 YGLVVALVLLFA 78 >2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2wie_A* 2xqt_A* 2w5j_A Length = 82 Score = 30.8 bits (70), Expect = 0.077 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 20 LAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGL 78 AA +A +A +G L + G R P A + +L+ E+L + Sbjct: 7 TAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTI 66 Query: 79 FLLLVVMLLLFV 90 + L+V ++LLF Sbjct: 67 YGLVVALVLLFA 78 >1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP} Length = 72 Score = 28.3 bits (64), Expect = 0.39 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 19 SLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGL 78 + A +AVG+ LG + I + + G R P +T + I + E+L + Sbjct: 4 GVLAAAIAVGLGALG---AGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPI 60 Query: 79 FLLLVVMLLLF 89 ++ + L Sbjct: 61 IGVVFSFIYLG 71 >2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4} Length = 69 Score = 27.3 bits (61), Expect = 0.92 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 25 VAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVV 84 +A G+A + A+AV+ I + G R P +T + I +AE++ + +++ Sbjct: 8 IAAGLAAVA---GAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVIS 64 Query: 85 MLLLF 89 +L+LF Sbjct: 65 LLILF 69 >1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A Length = 79 Score = 26.9 bits (60), Expect = 1.1 Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 19 SLAAKYVAVGMA-CLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLG 77 ++ Y+A + L A+ + + +L GA R P +T+ I + +++ Sbjct: 5 NMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIP 64 Query: 78 LFLLLVVMLLLFVI 91 + + + + ++F + Sbjct: 65 MIAVGLGLYVMFAV 78 >1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Length = 315 Score = 24.9 bits (54), Expect = 5.0 Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 34 MGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91 +G ++L + + + A +P + LI L + + ++M + F Sbjct: 10 LGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAW 67 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.330 0.138 0.387 Gapped Lambda K H 0.267 0.0501 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 656,395 Number of extensions: 22895 Number of successful extensions: 70 Number of sequences better than 10.0: 1 Number of HSP's gapped: 69 Number of HSP's successfully gapped: 15 Length of query: 91 Length of database: 5,693,230 Length adjustment: 58 Effective length of query: 33 Effective length of database: 4,287,078 Effective search space: 141473574 Effective search space used: 141473574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 50 (23.6 bits)