RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781087|ref|YP_003065500.1| H+transporting two-sector
ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62]
(91 letters)
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP
phosphorylase (H+ transporting), ATP synthesis, F1FO
ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A
{Bos taurus}
Length = 72
Score = 42.4 bits (100), Expect = 3e-05
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 21 AAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFL 80
AAK++ G A +G+ + +F + + G RNP + ++ ++E++GLF
Sbjct: 4 AAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFC 63
Query: 81 LLVVMLLLF 89
L+V L+LF
Sbjct: 64 LMVAFLILF 72
>2xok_K ATP synthase subunit 9, mitochondrial; hydrolase, ATP-binding,
F(O), F(1), mitochondr inner membrane, transmembrane;
HET: ANP; 3.01A {Saccharomyces cerevisiae} PDB: 2wpd_J*
Length = 76
Score = 41.9 bits (99), Expect = 4e-05
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 20 LAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLF 79
LAAKY+ G++ +G+ + ++ +F ++G RNP ++ ++E+ GLF
Sbjct: 5 LAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLF 64
Query: 80 LLLVVMLLLFVI 91
L+V LLLF +
Sbjct: 65 CLMVSFLLLFGV 76
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase
rotor, sodium-motive force, cell inner membrane, CF(0),
membrane, transport; HET: F09; 2.35A {Ilyobacter
tartaricus} PDB: 1yce_A*
Length = 89
Score = 39.2 bits (92), Expect = 2e-04
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 20 LAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLF 79
LAA V G A + + + R P A + +++ +AES G++
Sbjct: 11 LAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIY 70
Query: 80 LLLVVMLLLFV 90
L++ ++LL+
Sbjct: 71 SLVIALILLYA 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 33.4 bits (76), Expect = 0.014
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 28/75 (37%)
Query: 35 GLVALA-------VSNI----FTTYLSGAFRNPCAASAHKTEVLIFAVIA-----ESLGL 78
G++ LA + +YL GA + H ++ IA ES
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGA-------TGHSQGLVTAVAIAETDSWES--- 291
Query: 79 F--LLLVVMLLLFVI 91
F + + +LF I
Sbjct: 292 FFVSVRKAITVLFFI 306
>2wie_A C15_RING, ATP synthase C chain; hydrolase, F1FO ATP synthase
rotor, ION proton-translocation, ION transport,
transmembrane; HET: FME CVM; 2.13A {Arthrospira
platensis} PDB: 2w5j_A
Length = 82
Score = 31.8 bits (73), Expect = 0.040
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 20 LAAKYVAVGMA-CLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGL 78
AA +A +A +G L + G R P A + +L+ E+L +
Sbjct: 7 TAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTI 66
Query: 79 FLLLVVMLLLFV 90
+ L+V ++LLF
Sbjct: 67 YGLVVALVLLFA 78
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP
synthase rotor, ION (PROT translocation; HET: FME CVM;
1.84A {Arthrospira platensis} PDB: 2xqs_A* 2wie_A*
2xqt_A* 2w5j_A
Length = 82
Score = 30.8 bits (70), Expect = 0.077
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 20 LAAKYVAVGMAC-LGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGL 78
AA +A +A +G L + G R P A + +L+ E+L +
Sbjct: 7 TAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTI 66
Query: 79 FLLLVVMLLLFV 90
+ L+V ++LLF
Sbjct: 67 YGLVVALVLLFA 78
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION
transport, hydrolase; NMR {Bacillus SP}
Length = 72
Score = 28.3 bits (64), Expect = 0.39
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 19 SLAAKYVAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGL 78
+ A +AVG+ LG + I + + G R P +T + I + E+L +
Sbjct: 4 GVLAAAIAVGLGALG---AGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPI 60
Query: 79 FLLLVVMLLLF 89
++ + L
Sbjct: 61 IGVVFSFIYLG 71
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP
synthesis, transmembran CF(0), membrane, transport,
C-ring rotor; HET: FME DPV; 2.50A {Bacillus
pseudofirmus OF4}
Length = 69
Score = 27.3 bits (61), Expect = 0.92
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 25 VAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVV 84
+A G+A + A+AV+ I + G R P +T + I +AE++ + +++
Sbjct: 8 IAAGLAAVA---GAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVIS 64
Query: 85 MLLLF 89
+L+LF
Sbjct: 65 LLILF 69
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport;
NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A
1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Length = 79
Score = 26.9 bits (60), Expect = 1.1
Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 19 SLAAKYVAVGMA-CLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLG 77
++ Y+A + L A+ + + +L GA R P +T+ I + +++
Sbjct: 5 NMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIP 64
Query: 78 LFLLLVVMLLLFVI 91
+ + + + ++F +
Sbjct: 65 MIAVGLGLYVMFAV 78
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase,
membrane protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Length = 315
Score = 24.9 bits (54), Expect = 5.0
Identities = 9/58 (15%), Positives = 22/58 (37%)
Query: 34 MGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVVMLLLFVI 91
+G ++L + + + A +P + LI L + + ++M + F
Sbjct: 10 LGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAW 67
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.330 0.138 0.387
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 656,395
Number of extensions: 22895
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 15
Length of query: 91
Length of database: 5,693,230
Length adjustment: 58
Effective length of query: 33
Effective length of database: 4,287,078
Effective search space: 141473574
Effective search space used: 141473574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.6 bits)