RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781087|ref|YP_003065500.1| H+transporting two-sector ATPase C subunit [Candidatus Liberibacter asiaticus str. psy62] (91 letters) >d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]} Length = 79 Score = 28.8 bits (65), Expect = 0.12 Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 25 VAVGMACLGMGLVALAVSNIFTTYLSGAFRNPCAASAHKTEVLIFAVIAESLGLFLLLVV 84 V +G+A +G A+ + + +L GA R P +T+ I + +++ + + + Sbjct: 15 VMMGLAAIG---AAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLG 71 Query: 85 MLLLFVI 91 + ++F + Sbjct: 72 LYVMFAV 78 >d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 44 Score = 24.9 bits (54), Expect = 1.9 Identities = 6/11 (54%), Positives = 8/11 (72%) Query: 49 LSGAFRNPCAA 59 LSG ++ PCA Sbjct: 3 LSGRYKGPCAV 13 >d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]} Length = 185 Score = 23.4 bits (50), Expect = 5.0 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%) Query: 20 LAAKYVAVGM----ACLGMGLVALAVSNIFTTYLSGAFRN 55 L + V V + C+ M V S T+ + G FR Sbjct: 133 LEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRE 172 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.330 0.138 0.387 Gapped Lambda K H 0.267 0.0562 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 283,053 Number of extensions: 9745 Number of successful extensions: 18 Number of sequences better than 10.0: 1 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 3 Length of query: 91 Length of database: 2,407,596 Length adjustment: 55 Effective length of query: 36 Effective length of database: 1,652,446 Effective search space: 59488056 Effective search space used: 59488056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 47 (22.3 bits)