HHsearch alignment for GI: 254781088 and conserved domain: CHL00046

>CHL00046 atpI ATP synthase CF0 A subunit.
Probab=100.00  E-value=0  Score=395.13  Aligned_cols=221  Identities=29%  Similarity=0.501  Sum_probs=201.8

Q ss_pred             HHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCC
Q ss_conf             467312450001424834641089999999999999999983146553788640356778875678775205766-7530
Q gi|254781088|r    6 MSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQ-SKNF   84 (250)
Q Consensus         6 ~~~f~~~~l~~~~i~~~~~~it~~~l~~~i~~~il~~~~~~~~~~~~~vP~~~q~~~E~i~~~i~~~v~~~~g~~-~~~~   84 (250)
T Consensus         8 ~~~~~~g~~~~f~iGg~~~~-~~tli~~wivmaili~~~~~~tR~~~~vP~~~Qn~~E~~v~fi~~~v~~~~g~k~~~~~   86 (239)
T CHL00046          8 ISGVEVGQHFYWQIGGFQVH-GQVLITSWVVIAILLGSAILATRNPQTIPTGGQNFFEYVLEFIRDLSKTQIGEEEYGPW   86 (239)
T ss_pred             HHHHCCCCEEEEEECCEEEE-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             77733367389999998662-42799999999999999999983773478375999999999999999976181134421


Q ss_pred             HHHHHHHHHHHHCCCCCC-CHHH---------HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             258999999851232323-0124---------544310355421467999999999998415864211138999987543
Q gi|254781088|r   85 FPFVFSLFVFLTTANLLG-LHPY---------LFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIK  154 (250)
Q Consensus        85 ~p~i~TlF~fIl~~NllG-LiP~---------~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~~~~~~~~~~g~p~~l~  154 (250)
T Consensus        87 ~P~i~TlFlfIl~~N~~G~liP~~~~~~~~~~~~~PTadln~T~~lAli~~v~~~~~gik~~G~gy~~~~~~P------~  160 (239)
T CHL00046         87 VPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFGKYIQP------T  160 (239)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------C
T ss_conf             3999999999999998363454332256666657998775799999999999999999999643688888261------0


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02333567765441333335777877768999999999999999878899999999999999999999999999999999
Q gi|254781088|r  155 PLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFM  234 (250)
Q Consensus       155 p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~  234 (250)
T Consensus       161 p~~~pi~ii~~~~rpvSLslRLFGNi~aGeill~~~~~l----------------~~~~~p~~~~~~~lfvg~iQAyVF~  224 (239)
T CHL00046        161 PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSL----------------VPLVVPIPVMFLGLFTSGIQALIFA  224 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             588789999998712068889888777638999999999----------------9999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             999999733401034
Q gi|254781088|r  235 VLACVYIGDVYRSDQ  249 (250)
Q Consensus       235 ~Lt~~Yi~~a~~~~~  249 (250)
T Consensus       225 ~Lt~vYI~~a~e~hH  239 (239)
T CHL00046        225 TLAAAYIGESMEGHH  239 (239)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             999999976754339