HHsearch alignment for GI: 254781088 and conserved domain: CHL00046
>CHL00046 atpI ATP synthase CF0 A subunit.
Probab=100.00 E-value=0 Score=395.13 Aligned_cols=221 Identities=29% Similarity=0.501 Sum_probs=201.8
Q ss_pred HHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCC
Q ss_conf 467312450001424834641089999999999999999983146553788640356778875678775205766-7530
Q gi|254781088|r 6 MSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQ-SKNF 84 (250)
Q Consensus 6 ~~~f~~~~l~~~~i~~~~~~it~~~l~~~i~~~il~~~~~~~~~~~~~vP~~~q~~~E~i~~~i~~~v~~~~g~~-~~~~ 84 (250)
T Consensus 8 ~~~~~~g~~~~f~iGg~~~~-~~tli~~wivmaili~~~~~~tR~~~~vP~~~Qn~~E~~v~fi~~~v~~~~g~k~~~~~ 86 (239)
T CHL00046 8 ISGVEVGQHFYWQIGGFQVH-GQVLITSWVVIAILLGSAILATRNPQTIPTGGQNFFEYVLEFIRDLSKTQIGEEEYGPW 86 (239)
T ss_pred HHHHCCCCEEEEEECCEEEE-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 77733367389999998662-42799999999999999999983773478375999999999999999976181134421
Q ss_pred HHHHHHHHHHHHCCCCCC-CHHH---------HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 258999999851232323-0124---------544310355421467999999999998415864211138999987543
Q gi|254781088|r 85 FPFVFSLFVFLTTANLLG-LHPY---------LFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIK 154 (250)
Q Consensus 85 ~p~i~TlF~fIl~~NllG-LiP~---------~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~~~~~~~~~~g~p~~l~ 154 (250)
T Consensus 87 ~P~i~TlFlfIl~~N~~G~liP~~~~~~~~~~~~~PTadln~T~~lAli~~v~~~~~gik~~G~gy~~~~~~P------~ 160 (239)
T CHL00046 87 VPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFGKYIQP------T 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------C
T ss_conf 3999999999999998363454332256666657998775799999999999999999999643688888261------0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02333567765441333335777877768999999999999999878899999999999999999999999999999999
Q gi|254781088|r 155 PLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFM 234 (250)
Q Consensus 155 p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~ 234 (250)
T Consensus 161 p~~~pi~ii~~~~rpvSLslRLFGNi~aGeill~~~~~l----------------~~~~~p~~~~~~~lfvg~iQAyVF~ 224 (239)
T CHL00046 161 PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSL----------------VPLVVPIPVMFLGLFTSGIQALIFA 224 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 588789999998712068889888777638999999999----------------9999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999733401034
Q gi|254781088|r 235 VLACVYIGDVYRSDQ 249 (250)
Q Consensus 235 ~Lt~~Yi~~a~~~~~ 249 (250)
T Consensus 225 ~Lt~vYI~~a~e~hH 239 (239)
T CHL00046 225 TLAAAYIGESMEGHH 239 (239)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999976754339