HHsearch alignment for GI: 254781088 and conserved domain: COG0356
>COG0356 AtpB F0F1-type ATP synthase, subunit a [Energy production and conversion].
Probab=100.00 E-value=0 Score=399.87 Aligned_cols=238 Identities=39% Similarity=0.705 Sum_probs=223.5
Q ss_pred CCCCHHHHCCCCEEEEEECC--EEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 87644673124500014248--3464108999999999999999998314655378864035677887567877520576
Q gi|254781088|r 2 SKSPMSQFIVQKIVPIQVQG--FDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGN 79 (250)
Q Consensus 2 ~~sP~~~f~~~~l~~~~i~~--~~~~it~~~l~~~i~~~il~~~~~~~~~~~~~vP~~~q~~~E~i~~~i~~~v~~~~g~ 79 (250)
T Consensus 4 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~vP~~~Q~~~E~i~~fv~~~~~~~ig~ 83 (246)
T COG0356 4 TESPTAQFYIGHHLPFLILGDFWDLNITSLSLFVLLGVVFLFLFSLLAKRNTKLVPGGFQNFLEMIVEFVRGMVKDNIGG 83 (246)
T ss_pred CCCCCHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 45752377742440466415621577899999999999999999999851346698068999999999999999985276
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHH--HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCH
Q ss_conf 67530258999999851232323012--4544310355421467999999999998415864-21113899998754302
Q gi|254781088|r 80 QSKNFFPFVFSLFVFLTTANLLGLHP--YLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLG-FLRLFIPKDIPLLIKPL 156 (250)
Q Consensus 80 ~~~~~~p~i~TlF~fIl~~NllGLiP--~~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~~-~~~~~~~~g~p~~l~p~ 156 (250)
T Consensus 84 ~~~~~~pl~~TLF~fIfi~Nll~l~~~~~~~~pTadi~~tl~LAl~V~~~~~~~gik~~G~~~~~k~~~~~~~~--~~pl 161 (246)
T COG0356 84 KGKKFAPLALTLFLFIFIANLLGLDPLGLFESPTADINVTLALALLVFLLIHFYGIKKKGLGGFFKEFAFPPFP--LAPL 161 (246)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHH
T ss_conf 45401899999999999997245775345017875634899999999999999999984379999998058877--6204
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33356776544133333577787776899999999999999987889999999999999999999999999999999999
Q gi|254781088|r 157 VCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVL 236 (250)
Q Consensus 157 ~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~~L 236 (250)
T Consensus 162 ~~~~eiis~~a~piSLslRLFGNi~AG~iil~lia~~~~~~~~~------~~-~~~~~~~~~~~f~ifv~~lQAyVF~~L 234 (246)
T COG0356 162 MLPLEIVSELAKPISLSLRLFGNILAGEILLALIAGLVPYFMPQ------LG-LPIILNVAWTAFDIFVGTLQAYVFMML 234 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02999999877678899999986646599999999999999887------31-078899999999999999999999999
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999973340103
Q gi|254781088|r 237 ACVYIGDVYRSD 248 (250)
Q Consensus 237 t~~Yi~~a~~~~ 248 (250)
T Consensus 235 T~vYl~~a~~~~ 246 (246)
T COG0356 235 TIVYLSDAIEEE 246 (246)
T ss_pred HHHHHHHHHCCC
T ss_conf 999998774179