HHsearch alignment for GI: 254781088 and conserved domain: MTH00005
>MTH00005 ATP6 ATP synthase F0 subunit 6; Provisional.
Probab=100.00 E-value=0 Score=338.16 Aligned_cols=197 Identities=30% Similarity=0.491 Sum_probs=179.0
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99831465537886403567788756787752057667530258999999851232323012454431035542146799
Q gi|254781088|r 44 AFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLL 123 (250)
Q Consensus 44 ~~~~~~~~~~vP~~~q~~~E~i~~~i~~~v~~~~g~~~~~~~p~i~TlF~fIl~~NllGLiP~~~~~Ta~l~~t~~lal~ 123 (250)
T Consensus 33 ~~~~~~~~w~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slF~fIl~~Nl~GliP~~ft~Tshl~~t~~lal~ 112 (231)
T MTH00005 33 ILLISSSFWITPNRLSTITSPPKSTMFTQLSRTFGTHIKGFSSIISSLFIIIILMNLSGLIPYVFSTSSHLIFTLTLGLP 112 (231)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99971324732819999999999999999999846366551999999999999999977217677854789999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999984158642111389999875430233356776544133333577787776899999999999999987889
Q gi|254781088|r 124 VVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGML 203 (250)
Q Consensus 124 ~~~~~~~~g~~~~g~~~~~~~~~~g~p~~l~p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~ 203 (250)
T Consensus 113 ~w~~~~~~g~~~~~~~~~~hlvP~G~P~~L~p~mv~IE~iS~~iRPlTLsiRL~aNm~AGHill~ll~~~~~~~~~~~-- 190 (231)
T MTH00005 113 LWLSLILSSFSNSPKKFAAHLLPGGAPDWLNPFLVLIETISISVRPITLSFRLAANMSAGHIVLSLMGIYCASALFSS-- 190 (231)
T ss_pred HHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 999999999996448885536899985579989999999988232499999999999875999999999999999988--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999733
Q gi|254781088|r 204 GIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGD 243 (250)
Q Consensus 204 ~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~~Lt~~Yi~~ 243 (250)
T Consensus 191 -~~~~~~~~~~~~~~~~lE~~Va~IQAYVFtlL~~lY~~e 229 (231)
T MTH00005 191 -ILSLILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229 (231)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -999999999999999999999999999999999997656