HHsearch alignment for GI: 254781088 and conserved domain: MTH00176
>MTH00176 ATP6 ATP synthase F0 subunit 6; Provisional.
Probab=100.00 E-value=0 Score=343.07 Aligned_cols=195 Identities=29% Similarity=0.504 Sum_probs=176.1
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99831465537886403567788756787752057667530258999999851232323012454431035542146799
Q gi|254781088|r 44 AFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLL 123 (250)
Q Consensus 44 ~~~~~~~~~~vP~~~q~~~E~i~~~i~~~v~~~~g~~~~~~~p~i~TlF~fIl~~NllGLiP~~~~~Ta~l~~t~~lal~ 123 (250)
T Consensus 29 ~~~~~~~~w~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~slF~fIl~~Nl~GliP~~f~~Ts~l~~t~~lal~ 108 (224)
T MTH00176 29 LLLMMSGVWFCPSRFQVLLQMLSDFSPPVLLSSKGSYISGWAGLIFSLFILLMSLNLSGLIPHVFTPTSHLLLTLSLALP 108 (224)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99981114712829999999999999999997727676555999999999999999876238788862759999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999984158642111389999875430233356776544133333577787776899999999999999987889
Q gi|254781088|r 124 VVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGML 203 (250)
Q Consensus 124 ~~~~~~~~g~~~~g~~~~~~~~~~g~p~~l~p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~ 203 (250)
T Consensus 109 ~w~~~~~~g~~~~~~~~~~~~~P~G~P~~L~p~l~~IE~iS~liRPltL~vRL~aNm~AGHill~l~~~~~~~~~~---- 184 (224)
T MTH00176 109 LWLGVIFSSFFFNFNNRLSHLLPQGTPWWLNPFLVWIELVSLLIRPLTLAVRLAANLAAGHVLLGLLGWLLLPVGG---- 184 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 9999999999971088888707999724899999999999999958999999999999889999999999998999----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999997334
Q gi|254781088|r 204 GIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGDV 244 (250)
Q Consensus 204 ~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~~Lt~~Yi~~a 244 (250)
T Consensus 185 --~~~~~~~~~~~~~~~~E~~V~~IQAYVF~lL~~lY~~eh 223 (224)
T MTH00176 185 --LCFSGLSIPAVLYFLFEIAVCMVQGYVFFLLLSLYLDDH 223 (224)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf --999999999999999999999999999999999994467