HHsearch alignment for GI: 254781088 and conserved domain: PRK13419

>PRK13419 F0F1 ATP synthase subunit A; Provisional.
Probab=100.00  E-value=0  Score=428.59  Aligned_cols=241  Identities=27%  Similarity=0.456  Sum_probs=210.7

Q ss_pred             CCCCHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHH-HHH
Q ss_conf             876446731245000142483464108999999999999999998314655-----37886403567788756787-752
Q gi|254781088|r    2 SKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCR-----VVPTRLQSFFEIIYQFIMST-LCD   75 (250)
Q Consensus         2 ~~sP~~~f~~~~l~~~~i~~~~~~it~~~l~~~i~~~il~~~~~~~~~~~~-----~vP~~~q~~~E~i~~~i~~~-v~~   75 (250)
T Consensus        78 ~~~~f~~~~~~~---~~~~~~D~sITK~V~~mwi~a~~l~~~f~~~~r~ykk~~~~~~P~G~~n~~E~lV~FVRddIa~~  154 (335)
T PRK13419         78 EFEPFGEVHLPK---LVVGGFDISITKHVVMMWIASAILLVVFLAAGRKYKKMTKSQAPKGLANAMEALVEFIRLDVAKS  154 (335)
T ss_pred             ECCCCCCCCCCC---CEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             048987432764---01347540047869999999999999999999998614845598388888999999998645784


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf             0576675302589999998512323230124544310355421467999999999998415864-211138999987543
Q gi|254781088|r   76 SAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLG-FLRLFIPKDIPLLIK  154 (250)
Q Consensus        76 ~~g~~~~~~~p~i~TlF~fIl~~NllGLiP~~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~~-~~~~~~~~g~p~~l~  154 (250)
T Consensus       155 nIG~~~~ky~PfL~TlFfFIL~~NLlGLIP~~~t~T~nI~vT~~LAlitfi~~~~~Gik~~G~~~y~k~i-~~GvP~~L~  233 (335)
T PRK13419        155 NIGHGYEKFLPYLLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHL-TGGTHWSLW  233 (335)
T ss_pred             CCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCHHHH
T ss_conf             0486663531799999999999999773587878731488999999999999999999996768886655-899856799


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02333567765441333335777877768999999999999999878899999999999999999999999999999999
Q gi|254781088|r  155 PLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFM  234 (250)
Q Consensus       155 p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~  234 (250)
T Consensus       234 pllvPIEiis~f~RP~SLaIRLFANM~AGHivll~l~~l~fi~~~~----~v~~~vsv~~~l~i~lLEllVafLQAYIFT  309 (335)
T PRK13419        234 IIMIPIEFIGLFTKPFALTVRLFANMTAGHIVILSLIFISFILKSY----IVAVAVSVPFAIFIYLLEIFVAFLQAYIFT  309 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999876099999999999999878----999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCCC
Q ss_conf             9999997334010349
Q gi|254781088|r  235 VLACVYIGDVYRSDQH  250 (250)
Q Consensus       235 ~Lt~~Yi~~a~~~~~h  250 (250)
T Consensus       310 lLTavYIG~A~~~~~h  325 (335)
T PRK13419        310 MLSALFIGLATAHEGH  325 (335)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9999999867641234