HHsearch alignment for GI: 254781088 and conserved domain: PRK13419
>PRK13419 F0F1 ATP synthase subunit A; Provisional.
Probab=100.00 E-value=0 Score=428.59 Aligned_cols=241 Identities=27% Similarity=0.456 Sum_probs=210.7
Q ss_pred CCCCHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHH-HHH
Q ss_conf 876446731245000142483464108999999999999999998314655-----37886403567788756787-752
Q gi|254781088|r 2 SKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCR-----VVPTRLQSFFEIIYQFIMST-LCD 75 (250)
Q Consensus 2 ~~sP~~~f~~~~l~~~~i~~~~~~it~~~l~~~i~~~il~~~~~~~~~~~~-----~vP~~~q~~~E~i~~~i~~~-v~~ 75 (250)
T Consensus 78 ~~~~f~~~~~~~---~~~~~~D~sITK~V~~mwi~a~~l~~~f~~~~r~ykk~~~~~~P~G~~n~~E~lV~FVRddIa~~ 154 (335)
T PRK13419 78 EFEPFGEVHLPK---LVVGGFDISITKHVVMMWIASAILLVVFLAAGRKYKKMTKSQAPKGLANAMEALVEFIRLDVAKS 154 (335)
T ss_pred ECCCCCCCCCCC---CEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 048987432764---01347540047869999999999999999999998614845598388888999999998645784
Q ss_pred HCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf 0576675302589999998512323230124544310355421467999999999998415864-211138999987543
Q gi|254781088|r 76 SAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLG-FLRLFIPKDIPLLIK 154 (250)
Q Consensus 76 ~~g~~~~~~~p~i~TlF~fIl~~NllGLiP~~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~~-~~~~~~~~g~p~~l~ 154 (250)
T Consensus 155 nIG~~~~ky~PfL~TlFfFIL~~NLlGLIP~~~t~T~nI~vT~~LAlitfi~~~~~Gik~~G~~~y~k~i-~~GvP~~L~ 233 (335)
T PRK13419 155 NIGHGYEKFLPYLLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHL-TGGTHWSLW 233 (335)
T ss_pred CCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCHHHH
T ss_conf 0486663531799999999999999773587878731488999999999999999999996768886655-899856799
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02333567765441333335777877768999999999999999878899999999999999999999999999999999
Q gi|254781088|r 155 PLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFM 234 (250)
Q Consensus 155 p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~ 234 (250)
T Consensus 234 pllvPIEiis~f~RP~SLaIRLFANM~AGHivll~l~~l~fi~~~~----~v~~~vsv~~~l~i~lLEllVafLQAYIFT 309 (335)
T PRK13419 234 IIMIPIEFIGLFTKPFALTVRLFANMTAGHIVILSLIFISFILKSY----IVAVAVSVPFAIFIYLLEIFVAFLQAYIFT 309 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999876099999999999999878----999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999997334010349
Q gi|254781088|r 235 VLACVYIGDVYRSDQH 250 (250)
Q Consensus 235 ~Lt~~Yi~~a~~~~~h 250 (250)
T Consensus 310 lLTavYIG~A~~~~~h 325 (335)
T PRK13419 310 MLSALFIGLATAHEGH 325 (335)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999867641234