HHsearch alignment for GI: 254781088 and conserved domain: TIGR03306
>TIGR03306 altF1_A alternate F1F0 ATPase, F0 subunit A. and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=370.89 Aligned_cols=210 Identities=26% Similarity=0.456 Sum_probs=191.1
Q ss_pred CEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 5000142483464108999999999999999998314655--37886403567788756787752057667530258999
Q gi|254781088|r 13 KIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCR--VVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFS 90 (250)
Q Consensus 13 ~l~~~~i~~~~~~it~~~l~~~i~~~il~~~~~~~~~~~~--~vP~~~q~~~E~i~~~i~~~v~~~~g~~~~~~~p~i~T 90 (250)
T Consensus 5 ~~~~~~~G~~--~It~tvi~~wiv~~~l~~~~~~~~r~~~~~~~P~~~Q~~~E~~~~~v~~~v~~~~~~~~~~~~P~i~T 82 (217)
T TIGR03306 5 ELIYWQYGFV--KINATIAFTWLLMLLLVIGSWLITRRLSTGLERSRWQNLLEVLVTGIQEQISDVGLAKPRKYLPFLGT 82 (217)
T ss_pred EEEEEECCCE--EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHH
T ss_conf 0799961695--55699999999999999999999813777899980078889999999999998557347550999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999851232323012454431035542146799999999999841586-4211138999987543023335677654413
Q gi|254781088|r 91 LFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGL-GFLRLFIPKDIPLLIKPLVCFIEVSSFLFRP 169 (250)
Q Consensus 91 lF~fIl~~NllGLiP~~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~-~~~~~~~~~g~p~~l~p~~~~iE~is~~~rp 169 (250)
T Consensus 83 lF~fIl~~Nl~gliPg~~~pTadln~t~aLAl~~~v~~~~~gik~~G~~~yl~~~~~p------~p~l~Pi~ii~~~~rp 156 (217)
T TIGR03306 83 LFLFIAVANLLSVIPGYEPPTGSLSTTAALALCVFVAVPLFGIAERGLSGYLKSYLKP------TPFMLPFNIIGELSRT 156 (217)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC------HHHHHHHHHHHHHHHH
T ss_conf 9999999999981678758875644799999999999999999991717777760574------3899999999998802
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33335777877768999999999999999878899999999999999999999999999999999999999733401
Q gi|254781088|r 170 VSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGDVYR 246 (250)
Q Consensus 170 ~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~v~~iQAyVF~~Lt~~Yi~~a~~ 246 (250)
T Consensus 157 vSLs~RLFgNm~aG~iil~~l~~~----------------~~~~~p~~~~~~elfv~~iQAyVF~~Lt~vYi~~At~ 217 (217)
T TIGR03306 157 LALAVRLFGNMMSGSMILAILLSI----------------SPLIFPVLMQVLGLLTGMVQAYIFSVLATVYIAAATR 217 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 117889999888538999999999----------------9999999999999999999999999999999987529