Query gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 250
No_of_seqs 118 out of 2678
Neff 7.0
Searched_HMMs 33803
Date Wed Jun 1 21:39:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781088.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1c17_M ATP synthase subunit A 100.0 0 0 301.1 7.8 159 78-248 1-177 (177)
2 >2hzs_I RNA polymerase II medi 18.0 52 0.0015 13.0 1.2 16 235-250 12-27 (27)
3 >2wns_A Orotate phosphoribosyl 17.3 36 0.0011 13.8 0.3 12 239-250 61-72 (72)
4 >1x93_A Hypothetical protein H 13.6 41 0.0012 13.5 -0.2 25 226-250 29-53 (55)
5 >3few_X Colicin S4; cell lysis 11.3 89 0.0026 11.8 3.2 10 155-164 133-142 (211)
6 >2ptf_A Uncharacterized protei 7.4 1.1E+02 0.0031 11.4 0.0 23 222-250 48-70 (70)
7 >1pj3_A NAD-dependent malic en 6.6 1.4E+02 0.0042 10.7 0.5 23 90-112 39-61 (72)
8 >1p68_A De novo designed prote 5.8 75 0.0022 12.2 -1.4 23 49-71 28-50 (102)
9 >2w51_A Protein arMet; MANF, C 5.8 1.6E+02 0.0047 10.5 0.7 14 161-174 63-76 (99)
10 >3eaf_A ABC transporter, subst 5.7 1.4E+02 0.0042 10.7 -0.0 10 241-250 172-181 (181)
No 1
>>1c17_M ATP synthase subunit A; membrane protein, helix, complex; NMR {Escherichia coli} (M:)
Probab=100.00 E-value=0 Score=301.07 Aligned_cols=159 Identities=29% Similarity=0.430 Sum_probs=145.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCHH----------------HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7667530258999999851232323012----------------454431035542146799999999999841586421
Q gi|254781088|r 78 GNQSKNFFPFVFSLFVFLTTANLLGLHP----------------YLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFL 141 (250)
Q Consensus 78 g~~~~~~~p~i~TlF~fIl~~NllGLiP----------------~~~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~~~~ 141 (250)
.|++|||.|++.|+|.||+++|++|++| |.++||||+++|+++|+++|+.+++.|+|++|.+++
T Consensus 1 ~k~~~~~~p~~~tlF~fI~~~N~~glip~~~~~~~~~~~~g~~p~~~~pTa~~~~tl~LAl~~~~~~~~~g~~~~g~~~~ 80 (177)
T 1c17_M 1 HGKSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGF 80 (177)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99720689999999999999998853103232687640222442124512347899999999999999999998060666
Q ss_pred CC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--3899998754302333567765441333335777877768999999999999999878899999999999999999
Q gi|254781088|r 142 RL--FIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVT 219 (250)
Q Consensus 142 ~~--~~~~g~p~~l~p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (250)
.+ +.|+|.|+++.|++.++|++|+++||+|||+||||||+|||++++++++..+. ..+...+..+.
T Consensus 81 ~~~~~~P~g~p~~l~~~l~~iE~is~~~rplsLslRLf~Ni~AGhiil~li~~~~~~------------~~~~~~~~~~~ 148 (177)
T 1c17_M 81 TKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPW------------WSQWILNVPWA 148 (177)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------------CHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_conf 788704234403899899999999999889999999998244578999999999999------------99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999973340103
Q gi|254781088|r 220 GLEFFVAFMQAYIFMVLACVYIGDVYRSD 248 (250)
Q Consensus 220 ~lel~v~~iQAyVF~~Lt~~Yi~~a~~~~ 248 (250)
++|++|++||||||++|+++|++|+.|||
T Consensus 149 ~~e~~v~~IQAyVF~~Lt~~Yi~~~~~~h 177 (177)
T 1c17_M 149 IFHILIITLQAFIFMVLTIVYLSMASEEH 177 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999998676439
No 2
>>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae} (I:)
Probab=18.03 E-value=52 Score=12.99 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=10.3
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999997334010349
Q gi|254781088|r 235 VLACVYIGDVYRSDQH 250 (250)
Q Consensus 235 ~Lt~~Yi~~a~~~~~h 250 (250)
+|--.|.++.+++|||
T Consensus 12 vlkftftgekhhhhhh 27 (27)
T 2hzs_I 12 VLKFTFTGEKHHHHHH 27 (27)
T ss_dssp HHHHHHHCCCCSSCCC
T ss_pred EEEEEEECCCCCCCCC
T ss_conf 7898873552234669
No 3
>>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens} (A:1-38,A:172-205)
Probab=17.31 E-value=36 Score=13.79 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=7.2
Q ss_pred HHHHHHCCCCCC
Q ss_conf 997334010349
Q gi|254781088|r 239 VYIGDVYRSDQH 250 (250)
Q Consensus 239 ~Yi~~a~~~~~h 250 (250)
-|+.+|+++|||
T Consensus 61 ~~~~~~~~~~~~ 72 (72)
T 2wns_A 61 RFIQEAHHHHHH 72 (72)
T ss_dssp HHHHC-------
T ss_pred HHHHHHHHCCCC
T ss_conf 999860330269
No 4
>>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regulator, ARC, METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori 26695} (A:)
Probab=13.63 E-value=41 Score=13.53 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999997334010349
Q gi|254781088|r 226 AFMQAYIFMVLACVYIGDVYRSDQH 250 (250)
Q Consensus 226 ~~iQAyVF~~Lt~~Yi~~a~~~~~h 250 (250)
+.|.-||.--|--+-...++++|||
T Consensus 29 syikryilkalrkie~~g~hhhhhh 53 (55)
T 1x93_A 29 SYIKRYILKALRKIEMRGSHHHHHH 53 (55)
T ss_dssp HHHHHHHHHHHTCCC----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999999996487322557
No 5
>>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli} (X:295-505)
Probab=11.30 E-value=89 Score=11.79 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=5.4
Q ss_pred CHHHHHHHHH
Q ss_conf 0233356776
Q gi|254781088|r 155 PLVCFIEVSS 164 (250)
Q Consensus 155 p~~~~iE~is 164 (250)
|+++-+|...
T Consensus 133 Pl~lelEs~a 142 (211)
T 3few_X 133 PLMLEVESWV 142 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 7999999998
No 6
>>2ptf_A Uncharacterized protein MTH_863; structural genomics, unknown function, PSI-2, protein structure initiative; HET: FMN; 2.35A {Methanothermobacterthermautotrophicus str} (A:164-233)
Probab=7.37 E-value=1.1e+02 Score=11.40 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999997334010349
Q gi|254781088|r 222 EFFVAFMQAYIFMVLACVYIGDVYRSDQH 250 (250)
Q Consensus 222 el~v~~iQAyVF~~Lt~~Yi~~a~~~~~h 250 (250)
|-.--.|||. -.-+++.+++|||
T Consensus 48 eamrriiqal------eskiseghhhhhh 70 (70)
T 2ptf_A 48 EAMRRIIQAL------ESKISEGHHHHHH 70 (70)
T ss_dssp HHHHHHHHHH------HC-----------
T ss_pred HHHHHHHHHH------HHHHHCCCCCCCC
T ss_conf 9999999999------9987366664579
No 7
>>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} (A:36-107)
Probab=6.64 E-value=1.4e+02 Score=10.73 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.9
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 99998512323230124544310
Q gi|254781088|r 90 SLFVFLTTANLLGLHPYLFSFTS 112 (250)
Q Consensus 90 TlF~fIl~~NllGLiP~~~~~Ta 112 (250)
++|.-++..|+--+.|-.++||-
T Consensus 39 ~LFyrll~~h~~elmPIvYTPTV 61 (72)
T 1pj3_A 39 KLFYRILQDDIESLXPIVYTPTV 61 (72)
T ss_dssp HHHHHHHHHCHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHCCCEECCHH
T ss_conf 89999998759985892389716
No 8
>>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} (A:)
Probab=5.82 E-value=75 Score=12.17 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=16.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 46553788640356778875678
Q gi|254781088|r 49 SNCRVVPTRLQSFFEIIYQFIMS 71 (250)
Q Consensus 49 ~~~~~vP~~~q~~~E~i~~~i~~ 71 (250)
++...+.+..||++|-+.+|..+
T Consensus 28 ~n~~~vd~hlqnviedihdfmqg 50 (102)
T 1p68_A 28 DNLHDVDNHLQNVIEDIHDFMQG 50 (102)
T ss_dssp TTTHHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 21778788999999999999866
No 9
>>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress, phosphoprotein, neurotrophic factor, sialic acid, glycoprotein, growth factor, hormone; 2.80A {Homo sapiens} (A:1-99)
Probab=5.79 E-value=1.6e+02 Score=10.47 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 67765441333335
Q gi|254781088|r 161 EVSSFLFRPVSLSL 174 (250)
Q Consensus 161 E~is~~~rp~sLs~ 174 (250)
.++++++||+|.++
T Consensus 63 ~il~EvskPlS~~~ 76 (99)
T 2w51_A 63 KIINEVSKPLAHHI 76 (99)
T ss_dssp GGGHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCC
T ss_conf 99998751554689
No 10
>>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} (A:122-261,A:351-391)
Probab=5.75 E-value=1.4e+02 Score=10.73 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHCCCCCC
Q ss_conf 7334010349
Q gi|254781088|r 241 IGDVYRSDQH 250 (250)
Q Consensus 241 i~~a~~~~~h 250 (250)
+.+.++||||
T Consensus 172 ~~~~~~~~~~ 181 (181)
T 3eaf_A 172 IEEGHHHHHH 181 (181)
T ss_dssp HTCC------
T ss_pred HHHHCCCCCC
T ss_conf 0330333579
Done!