Query gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 250
No_of_seqs 118 out of 2678
Neff 7.0
Searched_HMMs 13730
Date Wed Jun 1 11:34:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781088.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c17m_ f.18.1.1 (M:) F1F0 ATP 100.0 0 0 269.9 7.8 151 80-242 3-171 (171)
2 d1xpma2 c.95.1.2 (A:168-388) 3 4.3 84 0.0061 9.9 2.4 27 167-193 96-122 (221)
3 d1u5ta2 a.4.5.54 (A:165-232) V 3.7 42 0.003 11.5 -2.0 42 48-89 24-65 (68)
4 d1gq2a2 c.58.1.3 (A:23-279) Mi 2.3 1.8E+02 0.013 8.2 0.4 59 52-112 30-94 (257)
5 d1lr0a_ d.212.1.1 (A:) TolA {P 2.1 2E+02 0.015 7.9 0.5 11 65-75 28-38 (126)
6 d3cx5h1 f.23.13.1 (H:2-94) Ubi 2.1 1.7E+02 0.012 8.3 -0.4 56 2-57 27-82 (93)
7 d1vfsa1 b.49.2.2 (A:4-12,A:250 2.1 1.5E+02 0.011 8.6 -0.7 11 240-250 135-145 (145)
8 d2j7za1 d.9.1.1 (A:1-67) Strom 2.0 1.7E+02 0.012 8.4 -0.5 8 168-175 1-8 (67)
9 d1o0sa2 c.58.1.3 (A:2-295) Mit 2.0 2.1E+02 0.015 7.8 0.4 22 90-111 107-128 (294)
10 d1c4ka3 d.125.1.1 (A:570-730) 2.0 2.1E+02 0.016 7.8 0.4 33 146-183 92-124 (161)
No 1
>d1c17m_ f.18.1.1 (M:) F1F0 ATP synthase subunit A {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=269.90 Aligned_cols=151 Identities=31% Similarity=0.491 Sum_probs=133.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHH----------------HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 6753025899999985123232301245----------------44310355421467999999999998415864-211
Q gi|254781088|r 80 QSKNFFPFVFSLFVFLTTANLLGLHPYL----------------FSFTSQIVVTTSFSLLVVLSVVISGFYVNGLG-FLR 142 (250)
Q Consensus 80 ~~~~~~p~i~TlF~fIl~~NllGLiP~~----------------~~~Ta~l~~t~~lal~~~~~~~~~g~~~~g~~-~~~ 142 (250)
|.|...|++.|+|+||+++|++|++|+. .+||+|+++|+++|+.+|+.+++.|+|+||.+ +.+
T Consensus 3 ~~~~~~P~~~tlF~fIl~~Nl~gLiP~~~~~~~~~~~~~~~~~~~~~Ta~~~~t~~lal~~~~~~~~~gik~~G~~~~~~ 82 (171)
T d1c17m_ 3 KSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFTK 82 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 72058999999999999999986544111278864022244212454211899899999999999999999926156778
Q ss_pred CC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13-89999875430233356776544133333577787776899999999999999987889999999999999999999
Q gi|254781088|r 143 LF-IPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGL 221 (250)
Q Consensus 143 ~~-~~~g~p~~l~p~~~~iE~is~~~rp~sLs~RLfgNi~aG~iil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (250)
++ .|++.|+++.|++.++|++|+++||+|||+||||||+|||+++.+++++... ..+...++++.++
T Consensus 83 ~~~~~~~~~~~l~p~~~~ie~is~~~rpvSLslRLFgNm~AG~ill~l~~~~~~~------------~~~~~~~v~~~~f 150 (171)
T d1c17m_ 83 ELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPW------------WSQWILNVPWAIF 150 (171)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------------CHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_conf 8715345517999888999999999999999999999786039999999999999------------9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999973
Q gi|254781088|r 222 EFFVAFMQAYIFMVLACVYIG 242 (250)
Q Consensus 222 el~v~~iQAyVF~~Lt~~Yi~ 242 (250)
|++||++|||||++||++|++
T Consensus 151 elfv~~iQAyVFt~Lt~vYis 171 (171)
T d1c17m_ 151 HILIITLQAFIFMVLTIVYLS 171 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999959
No 2
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
Probab=4.33 E-value=84 Score=9.89 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 413333357778777689999999999
Q gi|254781088|r 167 FRPVSLSLRLFANMLAGHLMLKVFAGF 193 (250)
Q Consensus 167 ~rp~sLs~RLfgNi~aG~iil~l~~~~ 193 (250)
..|-..--|.-||+..|.+-+.+++.+
T Consensus 96 ~~~s~~~~~~iGN~YTaSlyl~L~Sll 122 (221)
T d1xpma2 96 YEDAVDYNRYVGNIYTGSLYLSLISLL 122 (221)
T ss_dssp HHHHTTGGGGTCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 415777787608741178999999610
No 3
>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.68 E-value=42 Score=11.47 Aligned_cols=42 Identities=12% Similarity=-0.008 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 146553788640356778875678775205766753025899
Q gi|254781088|r 48 VSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVF 89 (250)
Q Consensus 48 ~~~~~~vP~~~q~~~E~i~~~i~~~v~~~~g~~~~~~~p~i~ 89 (250)
.++.++...|.+.++|.++.--.-.+.+.-+.+...|+|-++
T Consensus 24 ~~~lgW~~~Ra~~aLd~lv~eGl~WvD~Q~~~e~~YWfPsl~ 65 (68)
T d1u5ta2 24 KANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWDPSWI 65 (68)
T ss_dssp HHHHCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEEECGGGG
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEECHHHH
T ss_conf 988499899999999999966957876489997406672764
No 4
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=2.30 E-value=1.8e+02 Score=8.16 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=34.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH---HH---HHHHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 5378864035677887567877520576675302---58---9999998512323230124544310
Q gi|254781088|r 52 RVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFF---PF---VFSLFVFLTTANLLGLHPYLFSFTS 112 (250)
Q Consensus 52 ~~vP~~~q~~~E~i~~~i~~~v~~~~g~~~~~~~---p~---i~TlF~fIl~~NllGLiP~~~~~Ta 112 (250)
.+.|.+.++.=|.. +-.+.+.+.. ...-.||. .+ =-++|.-++..|+--+.|-.+|||-
T Consensus 30 GLLP~~v~tle~Qv-~r~~~~~~~~-~~~l~Ky~yL~~L~~~Ne~LFY~ll~~~~~e~~PivYTPTV 94 (257)
T d1gq2a2 30 GLLPPCFLGQDAQV-YSILKNFERL-TSDLDRYILLMSLQDRNEKLFYKVLTSDIERFMPIVYTPTV 94 (257)
T ss_dssp TSSCSCBCCHHHHH-HHHHHHHHHC-CCHHHHHHHHHHHHHHCHHHHHHHHHHTHHHHHHHHSTTHH
T ss_pred CCCCCCCCCHHHHH-HHHHHHHHHC-CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 37999955899999-9999999706-89689999999999748289999999779986572368617
No 5
>d1lr0a_ d.212.1.1 (A:) TolA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.12 E-value=2e+02 Score=7.94 Aligned_cols=11 Identities=9% Similarity=0.332 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 88756787752
Q gi|254781088|r 65 IYQFIMSTLCD 75 (250)
Q Consensus 65 i~~~i~~~v~~ 75 (250)
..+.+++.++.
T Consensus 28 y~~~i~~~I~~ 38 (126)
T d1lr0a_ 28 LDDLIVNLVSQ 38 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 6
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.10 E-value=1.7e+02 Score=8.32 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCCHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 87644673124500014248346410899999999999999999831465537886
Q gi|254781088|r 2 SKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTR 57 (250)
Q Consensus 2 ~~sP~~~f~~~~l~~~~i~~~~~~it~~~l~~~i~~~il~~~~~~~~~~~~~vP~~ 57 (250)
+.||+||=.....++--+.+..=-+-..++....-+++....+-.+.+.....-+|
T Consensus 27 sLSPfeQrafag~~~~~ifN~~RR~r~q~lyv~PPfi~~Y~iy~Wa~~~ne~l~sK 82 (93)
T d3cx5h1 27 AVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYSK 82 (93)
T ss_dssp EECGGGBCCSCCSTTTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTSG
T ss_pred EECHHHCCCCCCHHHHCCCHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 75722213012537761417877622403388066998999999888877998745
No 7
>d1vfsa1 b.49.2.2 (A:4-12,A:250-385) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]}
Probab=2.10 E-value=1.5e+02 Score=8.59 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=0.0
Q ss_pred HHHHHCCCCCC
Q ss_conf 97334010349
Q gi|254781088|r 240 YIGDVYRSDQH 250 (250)
Q Consensus 240 Yi~~a~~~~~h 250 (250)
|++.-.++|||
T Consensus 135 Yi~g~~~~~~~ 145 (145)
T d1vfsa1 135 YLGGLEHHHHH 145 (145)
T ss_dssp EESSCGGGGGC
T ss_pred EECCCCCCCCC
T ss_conf 71890444469
No 8
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.04 E-value=1.7e+02 Score=8.36 Aligned_cols=8 Identities=75% Similarity=1.115 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 13333357
Q gi|254781088|r 168 RPVSLSLR 175 (250)
Q Consensus 168 rp~sLs~R 175 (250)
||+||+-|
T Consensus 1 KPiSl~~R 8 (67)
T d2j7za1 1 KPVSLSYR 8 (67)
T ss_dssp CCTTTCCS
T ss_pred CCCCHHHC
T ss_conf 97224221
No 9
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=2.03 E-value=2.1e+02 Score=7.83 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9999851232323012454431
Q gi|254781088|r 90 SLFVFLTTANLLGLHPYLFSFT 111 (250)
Q Consensus 90 TlF~fIl~~NllGLiP~~~~~T 111 (250)
++|.-++..|+--+.|..++||
T Consensus 107 ~LFYrll~~h~ee~mPiVYTPT 128 (294)
T d1o0sa2 107 KLFYRVVCDHVKELMPIVYTPT 128 (294)
T ss_dssp HHHHHHHHHTHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHHCCCCCCCC
T ss_conf 1648998767998658126852
No 10
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=2.00 E-value=2.1e+02 Score=7.79 Aligned_cols=33 Identities=21% Similarity=-0.145 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998754302333567765441333335777877768
Q gi|254781088|r 146 PKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAG 183 (250)
Q Consensus 146 ~~g~p~~l~p~~~~iE~is~~~rp~sLs~RLfgNi~aG 183 (250)
|+| +|+++|=|.++.-+---=.++|=++|-+-|
T Consensus 92 PPG-----IP~l~PGE~i~~~~i~yl~~l~~~~~~fPG 124 (161)
T d1c4ka3 92 PPG-----VFCVAPGEKWSETAVKYFTILQDGINNFPG 124 (161)
T ss_dssp TTC-----SCSBCTTEECCHHHHHHHHHHHHHHHHSTT
T ss_pred CCC-----CCEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999-----767777445379899999999986142899
Done!