RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
(250 letters)
>gnl|CDD|177228 MTH00175, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 244
Score = 157 bits (400), Expect = 2e-39
Identities = 90/240 (37%), Positives = 146/240 (60%), Gaps = 8/240 (3%)
Query: 8 QFIVQKIVPIQVQGFD--LSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEII 65
QF + +++ IQ D ++FTNSS+ M+ L + IF + +++P R QS E+I
Sbjct: 8 QFNIIRLITIQAFLGDWLVTFTNSSMMMV---LAVIIFWLLLKGD-KLIPNRWQSIMELI 63
Query: 66 YQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVV 125
Y I S + D+ G + +FPF+ SLF+F+ N+LGL PY+F+ T+ I++T SL ++
Sbjct: 64 YLNIRSVVHDNLGKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSII 123
Query: 126 LSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHL 185
++V + GF FL + +P PL++ P + IE S+L R +SL +RL AN+ AGHL
Sbjct: 124 IAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHL 183
Query: 186 MLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGDVY 245
+ + +GF+ +M+S G+ I S P+L + +T LE VA +QAY+F +L +Y+GD
Sbjct: 184 LFAILSGFAFNMLSNGL--IILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGDTI 241
>gnl|CDD|177226 MTH00172, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 232
Score = 144 bits (365), Expect = 2e-35
Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 16/243 (6%)
Query: 1 MSKSPMSQFIVQKIVPIQVQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQS 60
MS S QF + ++ + TNSS+ M++ ++V+ + +++P R QS
Sbjct: 1 MSSSYFDQFNIVWLIGL---------TNSSIMMILVIIVVLLLFKGI----KLIPKRWQS 47
Query: 61 FFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSF 120
EIIY + D+ GN+ +FPF+ SLF F+ NLLGL PY+F+ T+ IVVT
Sbjct: 48 IIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFFFIVFLNLLGLFPYVFTPTTHIVVTLGL 107
Query: 121 SLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANM 180
S +++ V ++GF+ F + +P PL + PL+ IE S++ R +SL +RL AN+
Sbjct: 108 SFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANL 167
Query: 181 LAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVY 240
AGHL+ + AGF +M+ S P+L V +T LE VA +QAY+F +L +Y
Sbjct: 168 SAGHLLFAILAGFGFNMLCASGF---LSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIY 224
Query: 241 IGD 243
+ D
Sbjct: 225 LAD 227
>gnl|CDD|30705 COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production
and conversion].
Length = 246
Score = 135 bits (342), Expect = 9e-33
Identities = 93/253 (36%), Positives = 142/253 (56%), Gaps = 14/253 (5%)
Query: 1 MSKSPMSQFIVQKIVPIQVQGF--DLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRL 58
++SP +QF + +P + G DL+ T+ SL +L+ ++ +F+F+ A N ++VP
Sbjct: 3 ETESPTAQFYIGHHLPFLILGDFWDLNITSLSLFVLLGVVFLFLFSLLAKRNTKLVPGGF 62
Query: 59 QSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTTANLLGLHP--YLFSFTSQIVV 116
Q+F E+I +F+ + D+ G + K F P +LF+F+ ANLLGL P S T+ I V
Sbjct: 63 QNFLEMIVEFVRGMVKDNIGGKGKKFAPLALTLFLFIFIANLLGLDPLGLFESPTADINV 122
Query: 117 TTSFSLLVVLSVVISGFYVNGL-GFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLR 175
T + +LLV L + G GL GF + F PL PL+ +E+ S L +P+SLSLR
Sbjct: 123 TLALALLVFLLIHFYGIKKKGLGGFFKEFAFPPFPLA--PLMLPLEIVSELAKPISLSLR 180
Query: 176 LFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMV 235
LF N+LAG ++L + AG M LP++ NVA T + FV +QAY+FM+
Sbjct: 181 LFGNILAGEILLALIAGLVPYFMPQL-------GLPIILNVAWTAFDIFVGTLQAYVFMM 233
Query: 236 LACVYIGDVYRSD 248
L VY+ D +
Sbjct: 234 LTIVYLSDAIEEE 246
>gnl|CDD|109186 pfam00119, ATP-synt_A, ATP synthase A chain.
Length = 217
Score = 130 bits (329), Expect = 4e-31
Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%)
Query: 24 LSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCD-SAGNQSK 82
L+F SL ML+ LL+I A + VP+R QSF E+I F+++ + D G
Sbjct: 1 LNFHLLSLFMLLLLLLILFLVSLATTKNLTVPSRFQSFLELIVDFVLNLIKDQIGGKGGP 60
Query: 83 NFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLR 142
F P + +LF+F+ +NLLGL PY F+ TS I +T S +L + L+ +I G G
Sbjct: 61 LFAPLIITLFLFILISNLLGLIPYSFTPTSDISLTLSLALPLWLATLIYGIKNKGFSGFS 120
Query: 143 LFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGM 202
+P PL + P + IE+ S RP+SL LRLF N+LAGHL+L + AG ++ +
Sbjct: 121 HLVPPGTPLFLIPFLVPIELISLFARPLSLGLRLFGNILAGHLLLTLLAGLLWVLLFGLV 180
Query: 203 LGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGD 243
GI LP+L + +T LE FVA +QAY+F +L +Y+ +
Sbjct: 181 GGI----LPLLIVLLLTILELFVAAIQAYVFTILTSLYLSE 217
>gnl|CDD|39864 KOG4665, KOG4665, KOG4665, ATP synthase F0 subunit 6 and related
proteins [Energy production and conversion].
Length = 252
Score = 115 bits (290), Expect = 1e-26
Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 4/223 (1%)
Query: 24 LSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKN 83
+ SL LV LL+I F A SN + +P+R E I F+++ G N
Sbjct: 28 FNLFAQSLLTLVVLLIILGFVTLAGSNNKTIPSRWNILVEAILDFLLNLFKTQIGGSKGN 87
Query: 84 --FFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFL 141
+FPF+ SLF+F+ NLLGL PY F+ TS + T + ++ + L I G +GL F
Sbjct: 88 VMYFPFIISLFLFILFCNLLGLIPYSFTPTSHLGFTLALAISIWLGTTILGLQSHGLHFF 147
Query: 142 RLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIG 201
F+P PL + P + IE S+L RP+SL +RL AN+LAGHL++ + G +MM +
Sbjct: 148 AYFLPAGTPLPLIPFLVLIETISYLIRPLSLGVRLTANILAGHLLMNILGGLLFTMMLMN 207
Query: 202 MLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGDV 244
++ + + ++ +A+T LE VA +QAY+F +L +Y+ D
Sbjct: 208 LIFLVIGAIFII--LALTMLELAVAIIQAYVFAILIALYLNDS 248
>gnl|CDD|133799 MTH00174, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 252
Score = 107 bits (268), Expect = 4e-24
Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 3/225 (1%)
Query: 19 VQGFDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAG 78
+ G FTN+ M ++ + + +N +VP R+ E+IY + L D+ G
Sbjct: 26 INGEFFCFTNTFFMMSFAVFLFYTIGAKGNNNT-LVPNRILVGLELIYSHFYTVLKDNLG 84
Query: 79 NQSKNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGL 138
N+ N+ FV SLF+ + N LGL PY+F+ T +V+T S +++ ++G
Sbjct: 85 NKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRF 144
Query: 139 GFLRLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMM 198
F + +P+ PL + PL+ IE S++ R +SL +RL AN+ +GHL+ + A F+ M+
Sbjct: 145 NFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMI 204
Query: 199 SIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGD 243
+ G+L SF+P + VT LE VA +QAY+F +L VY+ D
Sbjct: 205 NTGIL--IGSFVPFAILIFVTILEMAVAIIQAYVFTLLTIVYLRD 247
>gnl|CDD|177227 MTH00173, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 231
Score = 96.1 bits (240), Expect = 7e-21
Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 3/221 (1%)
Query: 23 DLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSK 82
D + + SSL+ L+ LL + FF+ S V + L S F++ + S + S+G
Sbjct: 11 DHNSSFSSLSFLMWLLSLMSLFFFSSS-VWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLG 69
Query: 83 NFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLR 142
F + SLF+FL + NL GL P++FS TS + T S +L + LS+++SG + N L
Sbjct: 70 GFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLA 129
Query: 143 LFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGM 202
+P P + P + IE S L RP++L++RL AN+ AGH++L + + +S +
Sbjct: 130 GLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYLSSSLFSSS 189
Query: 203 LGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGD 243
+ L L V E V +QAYIF +L +Y +
Sbjct: 190 VVSLLLVL--LIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
>gnl|CDD|177229 MTH00176, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 229
Score = 95.5 bits (238), Expect = 1e-20
Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 3/224 (1%)
Query: 22 FDLSFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQS 81
FD N + +S + + +F S+ P++LQ F + F+ + S G+
Sbjct: 9 FDPPNKNIFSMISLSWITLLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYI 68
Query: 82 KNFFPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFL 141
+ SLF+ + + NL GL PY+F+ TS +V+T S +L + L V++SGF N L
Sbjct: 69 LGSASIIISLFILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRL 128
Query: 142 RLFIPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIG 201
+P+ P L+ P + IE+ S L RP++L++RL AN+ AGHL+L + ++ +
Sbjct: 129 SHLVPQGTPPLLNPFLVLIELVSLLIRPLTLAVRLAANLSAGHLLLGLLGAAMWGLLPVS 188
Query: 202 MLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGDVY 245
+ L ++ + E V +QAY+F +L +Y+ +
Sbjct: 189 --PLIGFLLLIVQ-ILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
>gnl|CDD|177214 MTH00157, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 223
Score = 92.5 bits (231), Expect = 9e-20
Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 25 SFTNSSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNF 84
+ N SL L + L + ++P+R + I + + G ++K
Sbjct: 13 TSFNLSLNWLSTFLGLLFIPSSFW----LIPSRYNILWNKILKTLHKEFKTLLGPKNKGS 68
Query: 85 FPFVFSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLF 144
SLF F+ N LGL PY+F+ TS + +T S +L + LS ++ G+ N
Sbjct: 69 TLIFISLFSFILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHL 128
Query: 145 IPKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLG 204
+P+ P ++ P + IE S L RP +L++RL ANM+AGHL+L + S+ S+ +
Sbjct: 129 VPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGHLLLTLLGNTGPSLSSMILSI 188
Query: 205 IAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGDVY 245
+ +L + + LE VA +Q+Y+F VL+ +Y +V
Sbjct: 189 L------ILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
>gnl|CDD|177110 MTH00035, ATP6, ATP synthase F0 subunit 6; Validated.
Length = 229
Score = 86.2 bits (214), Expect = 7e-18
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 4/204 (1%)
Query: 38 LVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVFLTT 97
VI + F ++ +P+R QS + Q I+ + + + + + ++F+ + +
Sbjct: 26 SVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILILS 85
Query: 98 ANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLV 157
N+LGL PY F+ TS I +T S + + +SV I GFY+ L +P+ P + PL+
Sbjct: 86 INVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLM 145
Query: 158 CFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVA 217
+IE S +P++L LRL AN+ AGHL++ + + + + ++ I + L +
Sbjct: 146 VWIETLSLFAQPIALGLRLAANLTAGHLLIFLLSTAIWELSNSPLISIITLIIFFLLFI- 204
Query: 218 VTGLEFFVAFMQAYIFMVLACVYI 241
LE VA +QAY+F L Y+
Sbjct: 205 ---LEIGVACIQAYVFTALVHFYL 225
>gnl|CDD|177163 MTH00101, ATP6, ATP synthase F0 subunit 6; Validated.
Length = 226
Score = 85.4 bits (212), Expect = 1e-17
Identities = 62/210 (29%), Positives = 115/210 (54%), Gaps = 4/210 (1%)
Query: 34 LVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFV 93
+V+L+++F F N R++ RL S + + Q + + + + + SL +
Sbjct: 19 IVTLIIMFPSLLFPTPN-RLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLIL 77
Query: 94 FLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLI 153
F+ + NLLGL P+ F+ T+Q+ + ++ + VI+GF L F+P+ P +
Sbjct: 78 FIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPL 137
Query: 154 KPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVL 213
P++ IE S +P++L++RL AN+ AGHL++ + G + ++MSI +F+ +
Sbjct: 138 IPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLALMSISTTTALITFIIL- 196
Query: 214 ANVAVTGLEFFVAFMQAYIFMVLACVYIGD 243
+ +T LEF VA +QAY+F +L +Y+ D
Sbjct: 197 --ILLTILEFAVALIQAYVFTLLVSLYLHD 224
>gnl|CDD|177230 MTH00179, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 227
Score = 83.8 bits (208), Expect = 4e-17
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 5/208 (2%)
Query: 34 LVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFV 93
L++L ++ + F R + RL + + L + + SL +
Sbjct: 19 LLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLML 78
Query: 94 FLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLI 153
FL T NLLGL PY F+ T+Q+ + +L + L V+ G + L +P+ P +
Sbjct: 79 FLLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPL 138
Query: 154 KPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFA-GFSTSMMSIGMLGIAFSFLPV 212
P++ +IE S L RP++L +RL AN+ AGHL++ + + M +GM+ L +
Sbjct: 139 IPMLVWIETISLLIRPLALGVRLTANITAGHLLMHLISSAVFVLMNFMGMVA----LLTL 194
Query: 213 LANVAVTGLEFFVAFMQAYIFMVLACVY 240
L +T LE VA +QAY+F++L +Y
Sbjct: 195 LVLFLLTLLEVAVAMIQAYVFVLLLSLY 222
>gnl|CDD|164583 MTH00005, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 231
Score = 81.3 bits (201), Expect = 2e-16
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 7/215 (3%)
Query: 29 SSLAMLVSLLVIFIFAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFV 88
S+ + +I + + S+ + P RL S + + L + G K F +
Sbjct: 22 STAFWAFNFSIILLLS----SSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLI 77
Query: 89 FSLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKD 148
+LF + NL GL PY+FS +S ++ T + L + LS+++S + F +P
Sbjct: 78 SALFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGG 137
Query: 149 IPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFS 208
P + P + IE S L RP++LS RL ANM AGH++L + ++ S + + +
Sbjct: 138 APDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGIYAASALFSSISS---T 194
Query: 209 FLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIGD 243
L +L + E + +QAYIF +L +Y D
Sbjct: 195 ILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229
>gnl|CDD|177190 MTH00132, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 227
Score = 75.7 bits (187), Expect = 1e-14
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 11/155 (7%)
Query: 90 SLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDI 149
SL +FL T N+LGL PY F+ T+Q+ + ++ + L+ VI G L +P+
Sbjct: 75 SLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGT 134
Query: 150 PLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFA----GFSTSMMSIGMLGI 205
P + P++ IE S RP++L +RL AN+ AGHL++++ A M ++ +L
Sbjct: 135 PTPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPLMPTVAILTA 194
Query: 206 AFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVY 240
FL +T LE VA +QAY+F++L +Y
Sbjct: 195 TLLFL-------LTLLEVAVAMIQAYVFVLLLSLY 222
>gnl|CDD|177181 MTH00120, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 227
Score = 74.1 bits (183), Expect = 3e-14
Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 90 SLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDI 149
SL + L NLLGL PY F+ T+Q+ + + ++ + L+ V++G L +P+
Sbjct: 75 SLMLLLLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGT 134
Query: 150 PLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSF 209
P + P + IE S L RP++L +RL AN+ AGHL++++ ST+ +++ S
Sbjct: 135 PTPLIPALILIETISLLIRPLALGVRLTANLTAGHLLIQL---ISTATLNLLPTMPTLSL 191
Query: 210 LPVLANVAVTGLEFFVAFMQAYIFMVLACVY 240
L ++ + +T LE VA +QAY+F++L +Y
Sbjct: 192 LTLIILLLLTILELAVAMIQAYVFVLLLSLY 222
>gnl|CDD|176987 CHL00046, atpI, ATP synthase CF0 A subunit.
Length = 228
Score = 70.3 bits (173), Expect = 4e-13
Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 46/229 (20%)
Query: 33 MLVSLLVIFI---FAFFAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQ-----SKNF 84
++ S +VI I A A N + +PT Q+FFE + +FI D A Q + +
Sbjct: 26 LITSWVVIAILLGSALLATRNLQTIPTGGQNFFEYVLEFIR----DLAKTQIGEEEYRPW 81
Query: 85 FPFVFSLFVFLTTANLLG-LHPY---------LFSFTSQIVVTTSFSLLVVLSVVISGFY 134
PF+ ++F+F+ +N G L P+ L + T+ I T + +LL ++ +G
Sbjct: 82 VPFIGTMFLFIFVSNWSGALLPWKLIELPHGELAAPTNDINTTVALALLTSVAYFYAGLS 141
Query: 135 VNGLGFLRLFI-PKDIPLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGF 193
GLG+ +I P I L I L F +P+SLS RLF N+LA L++ V
Sbjct: 142 KKGLGYFGKYIQPTPILLPINILEDFT-------KPLSLSFRLFGNILADELVVAVLV-- 192
Query: 194 STSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIG 242
S +P++ + V L F + +QA IF LA YIG
Sbjct: 193 --------------SLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIG 227
>gnl|CDD|177144 MTH00073, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 227
Score = 70.4 bits (173), Expect = 5e-13
Identities = 52/152 (34%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
Query: 90 SLFVFLTTANLLGLHPYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDI 149
SL VFL T NLLGL PY F+ T+Q+ + ++ + L+ V+ G L +P+
Sbjct: 75 SLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGT 134
Query: 150 PLLIKPLVCFIEVSSFLFRPVSLSLRLFANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSF 209
P L+ P++ IE S RP++L +RL AN+ AGHL++++ + + ++ + M ++
Sbjct: 135 PTLLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATLVLLPL-MPTVSILT 193
Query: 210 LPVLANVAVTGLEFFVAFMQAYIFMVLACVYI 241
+ VL +T LE VA +QAY+F++L +Y+
Sbjct: 194 MIVL--FLLTLLEIAVAMIQAYVFVLLLSLYL 223
>gnl|CDD|177152 MTH00087, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 195
Score = 46.1 bits (110), Expect = 8e-06
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 60 SFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFVF--LTTANLLGLHPYLFSFTSQIVVT 117
S ++ + L +K V S F F L GL PY FS + T
Sbjct: 25 SMLNVLVKKFFGLLIIVFSYSNKLPLSSVISFFTFIVLLLFCFGGLFPYSFSPCGMVEFT 84
Query: 118 TSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVCFI-EVSSFLFRPVSLSLRL 176
++L+ LS +S + +++ K +K E+ S L RP++L+LRL
Sbjct: 85 FLYALVAWLSTFLSFLSKSE--KFSVYLSKGSDSFLKTFSMLFVEIVSELSRPLALTLRL 142
Query: 177 FANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVL 236
N++ GHL+ + LG + +L +LA + +E FVAF+Q+YIF L
Sbjct: 143 TVNLMVGHLI----------SSLLNFLGEKYVWLSILAIM----MECFVAFIQSYIFSRL 188
Query: 237 ACVY 240
+Y
Sbjct: 189 IYLY 192
>gnl|CDD|177125 MTH00050, ATP6, ATP synthase F0 subunit 6; Validated.
Length = 170
Score = 37.6 bits (88), Expect = 0.003
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 105 PYLFSFTSQIVVTTSFSLLVVLSVVISGFYVNGLGFLRLFIPKDIPLLIKPLVCFIEVSS 164
PY++S +V + +S+ +S + + F F+P PL I P VC E S
Sbjct: 43 PYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAETIS 102
Query: 165 FLFRPVSLSLRLFANMLAG 183
++ RPV L LR F N+ G
Sbjct: 103 YIIRPVVLILRPFINISLG 121
>gnl|CDD|110007 pfam00974, Rhabdo_glycop, Rhabdovirus spike glycoprotein.
Frequently abbreviated to G protein. The glycoprotein
spike is made up of a trimer of G proteins. Channel
formed by glycoprotein spike is thought to function in a
similar manner to Influenza virus M2 protein channel,
thus allowing a signal to pass across the viral membrane
to signal for viral uncoating.
Length = 501
Score = 28.9 bits (65), Expect = 1.2
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 18 QVQGFDLSFTN--SSLAMLVSLLVIFIFAFFAVSNCRVV--PTRLQSFFEI-IYQFIMST 72
V DL F+N L + +V + + CRV+ P R ++ I + S
Sbjct: 440 PVDLVDLWFSNWGFWLMLSAMGVVGLVLLLLLIRCCRVLSRPPRPRAKQPIPMSHVSRSR 499
Query: 73 L 73
L
Sbjct: 500 L 500
>gnl|CDD|153084 cd01675, RNR_III, Class III ribonucleotide reductase.
Ribonucleotide reductase (RNR) catalyzes the reductive
synthesis of deoxyribonucleotides from their
corresponding ribonucleotides. It provides the
precursors necessary for DNA synthesis. RNRs are
separated into three classes based on their
metallocofactor usage. Class I RNRs, found in
eukaryotes, bacteria, and bacteriophage, use a
diiron-tyrosyl radical. Class II RNRs, found in
bacteria, bacteriophage, algae and archaea, use coenzyme
B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found
in strict or facultative anaerobic bacteria,
bacteriophage, and archaea, use an FeS cluster and
S-adenosylmethionine to generate a glycyl radical. Many
organisms have more than one class of RNR present in
their genomes. All three RNRs have a ten-stranded
alpha-beta barrel domain that is structurally similar to
the domain of PFL (pyruvate formate lyase). The class
III enzyme from phage T4 consists of two subunits, this
model covers the larger subunit which contains the
active and allosteric sites.
Length = 555
Score = 28.8 bits (65), Expect = 1.4
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 55 PTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPFVFSLFV 93
P L S I F+ + + AG Q+ F + FV
Sbjct: 80 PKHLSSALGHIVNFLGTVQNEQAGGQAFPEFDTYLAPFV 118
>gnl|CDD|33662 COG3872, COG3872, Predicted metal-dependent enzyme [General
function prediction only].
Length = 318
Score = 26.4 bits (58), Expect = 7.1
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 29 SSLAMLVSLLVIFIFAF-FAVSNCRVVPTRLQSFFEIIYQFIMSTLCDSAGNQSKNFFPF 87
S LAM++ L VI + +F F +VP L F I G ++N
Sbjct: 101 SKLAMILGLAVIGVLSFVFGKFVFTLVPVFLAELFSPI----------FPGRVAQNLLEG 150
Query: 88 VFSLFVFLTTANLLGLHP 105
F L +FL ++ P
Sbjct: 151 FFRLILFLGYIWIISFTP 168
>gnl|CDD|146013 pfam03176, MMPL, MMPL family. Members of this family are putative
integral membrane proteins from bacteria. Several of the
members are mycobacterial proteins. Many of the proteins
contain two copies of this aligned region. The function
of these proteins is not known, although it has been
suggested that they may be involved in lipid transport.
Length = 332
Score = 26.5 bits (59), Expect = 8.2
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 177 FANMLAGHLMLKVFAGFSTSMMSIGMLGIAFSFLPVLANVAVT-GLEFFVAFMQAYIFMV 235
+ G + AG + ++I ML ++F+ LPV A V T + V + A +
Sbjct: 239 VIRAVRGTGKVVTAAGLT---VAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLP 295
Query: 236 LACVYIG 242
+G
Sbjct: 296 ALLALLG 302
>gnl|CDD|145929 pfam03043, Herpes_UL87, Herpesvirus UL87 family. Members of this
family are functionally uncharacterized. This family
groups together EBV BcRF1, HSV-6 U58, HVS-1 24 and HCMV
UL87. The proteins range from 575 to 950 amino acids in
length.
Length = 533
Score = 26.1 bits (58), Expect = 9.6
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 109 SFTSQIVVTTSFSLLVVLSVVISGFYVN---GLGFLRLFIP-KDI 149
SFT + ++V ISG Y+ +G L+ F+P K I
Sbjct: 272 SFTVSTFYSNDACNTAAINVNISGDYLEFLYAMGVLKCFLPIKTI 316
>gnl|CDD|113001 pfam04211, MtrC, Tetrahydromethanopterin S-methyltransferase,
subunit C. The N5-methyltetrahydromethanopterin:
coenzyme M (EC:2.1.1.86) of Methanosarcina mazei Go1 is
a membrane-associated, corrinoid-containing protein that
uses a transmethylation reaction to drive an
energy-conserving sodium ion pump.
Length = 262
Score = 25.9 bits (57), Expect = 9.9
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 192 GFSTSMMSIGMLGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACV 239
G T + SIGM+ + + +A +A++G A I +++A V
Sbjct: 66 GLGTGVPSIGMMSLGMGIVAAVAGLALSGNFTLPALAAPIIGLIVAAV 113
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.336 0.145 0.426
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,989,059
Number of extensions: 168174
Number of successful extensions: 1224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1150
Number of HSP's successfully gapped: 222
Length of query: 250
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,297,318
Effective search space: 683273562
Effective search space used: 683273562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (25.4 bits)