Query gi|254781089|ref|YP_003065502.1| hypothetical protein CLIBASIA_04955 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 80
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 04:20:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781089.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00176 mobB molybdopterin-g 89.3 0.16 4.1E-06 29.5 1.2 29 1-34 5-33 (165)
2 PRK00064 recF recombination pr 84.1 0.62 1.6E-05 26.4 1.9 20 2-21 30-49 (355)
3 COG1195 RecF Recombinational D 84.0 0.61 1.6E-05 26.4 1.8 28 2-29 30-57 (363)
4 COG1763 MobB Molybdopterin-gua 83.0 0.54 1.4E-05 26.7 1.2 17 2-18 9-25 (161)
5 cd03242 ABC_RecF RecF is a rec 81.7 0.9 2.3E-05 25.5 1.9 23 2-24 28-50 (270)
6 PRK10751 molybdopterin-guanine 81.3 0.74 1.9E-05 26.0 1.4 16 2-17 9-24 (170)
7 TIGR00955 3a01204 Pigment prec 80.5 0.81 2.1E-05 25.8 1.4 16 1-16 64-79 (671)
8 COG4175 ProV ABC-type proline/ 80.1 0.75 1.9E-05 26.0 1.0 18 1-18 60-77 (386)
9 TIGR02982 heterocyst_DevA ABC 79.6 0.95 2.4E-05 25.4 1.4 14 2-15 38-51 (220)
10 KOG0061 consensus 79.2 0.93 2.4E-05 25.4 1.3 17 1-17 62-78 (613)
11 cd02021 GntK Gluconate kinase 76.3 0.6 1.5E-05 26.5 -0.4 30 1-41 5-34 (150)
12 cd03116 MobB Molybdenum is an 76.2 1.3 3.3E-05 24.7 1.3 16 2-17 8-23 (159)
13 TIGR00956 3a01205 Pleiotropic 75.1 1.4 3.6E-05 24.5 1.3 15 1-15 859-873 (1466)
14 TIGR00455 apsK adenylylsulfate 74.6 1.5 3.9E-05 24.3 1.4 27 1-34 25-51 (187)
15 TIGR00503 prfC peptide chain r 72.4 2.1 5.4E-05 23.5 1.6 37 4-40 20-58 (530)
16 PRK03918 chromosome segregatio 71.3 2.3 5.9E-05 23.3 1.6 20 2-21 30-51 (882)
17 TIGR01186 proV glycine betaine 71.0 2.1 5.3E-05 23.6 1.3 18 1-18 25-42 (372)
18 TIGR03415 ABC_choXWV_ATP choli 70.8 1.9 4.8E-05 23.8 1.1 18 1-18 56-73 (382)
19 TIGR00611 recf DNA replication 70.7 2.9 7.3E-05 22.8 2.0 30 1-30 42-73 (399)
20 COG1136 SalX ABC-type antimicr 69.2 2.4 6E-05 23.3 1.3 17 1-17 37-53 (226)
21 TIGR02315 ABC_phnC phosphonate 68.9 2.4 6.2E-05 23.2 1.3 16 1-16 34-49 (253)
22 PRK00889 adenylylsulfate kinas 68.1 4.8 0.00012 21.6 2.7 17 1-17 10-26 (175)
23 COG4108 PrfC Peptide chain rel 67.9 2.7 6.9E-05 23.0 1.4 42 4-45 21-69 (528)
24 cd02027 APSK Adenosine 5'-phos 67.3 3 7.7E-05 22.7 1.5 39 1-45 5-44 (149)
25 cd04169 RF3 RF3 subfamily. Pe 67.1 3 7.7E-05 22.7 1.5 23 1-23 8-30 (267)
26 pfam01583 APS_kinase Adenylyls 66.4 3.1 8E-05 22.6 1.5 17 1-17 8-24 (157)
27 cd03262 ABC_HisP_GlnQ_permease 64.8 3 7.6E-05 22.8 1.1 18 1-18 32-49 (213)
28 cd01886 EF-G Elongation factor 64.3 3.3 8.5E-05 22.5 1.3 44 1-44 5-51 (270)
29 PRK03846 adenylylsulfate kinas 64.0 3.8 9.7E-05 22.2 1.5 35 1-41 30-64 (198)
30 PRK00741 prfC peptide chain re 63.7 3.6 9.3E-05 22.3 1.4 44 2-45 17-67 (526)
31 PRK10070 glycine betaine trans 63.6 3.2 8E-05 22.6 1.0 18 1-18 60-77 (400)
32 TIGR02142 modC_ABC molybdate A 61.9 4.1 0.0001 22.0 1.4 16 1-16 29-44 (361)
33 cd04170 EF-G_bact Elongation f 60.9 4.3 0.00011 21.9 1.4 45 1-45 5-52 (268)
34 PRK05541 adenylylsulfate kinas 60.8 5 0.00013 21.5 1.7 39 1-45 13-51 (176)
35 COG3842 PotA ABC-type spermidi 60.7 4.3 0.00011 21.9 1.3 18 1-18 37-54 (352)
36 TIGR03185 DNA_S_dndD DNA sulfu 60.5 5.4 0.00014 21.4 1.8 19 2-20 35-55 (650)
37 TIGR00968 3a0106s01 sulfate AB 59.9 4.7 0.00012 21.7 1.4 16 1-16 32-47 (241)
38 PRK10246 exonuclease subunit S 59.8 5.1 0.00013 21.5 1.6 21 2-22 37-59 (1047)
39 cd03234 ABCG_White The White s 58.6 4.5 0.00012 21.8 1.1 17 1-17 39-55 (226)
40 cd03301 ABC_MalK_N The N-termi 58.6 4.6 0.00012 21.7 1.2 18 1-18 32-49 (213)
41 PRK05537 bifunctional sulfate 58.4 9.4 0.00024 20.1 2.7 15 1-15 398-412 (568)
42 PRK11144 modC molybdate transp 58.0 4.7 0.00012 21.7 1.1 18 1-18 30-47 (352)
43 COG0419 SbcC ATPase involved i 56.4 7 0.00018 20.8 1.8 23 2-24 32-56 (908)
44 TIGR03608 L_ocin_972_ABC putat 56.3 5.5 0.00014 21.3 1.2 18 1-18 30-47 (206)
45 TIGR01187 potA polyamine ABC t 56.2 6.4 0.00016 21.0 1.6 18 1-18 2-19 (331)
46 cd03297 ABC_ModC_molybdenum_tr 55.9 5.2 0.00013 21.5 1.1 18 1-18 29-46 (214)
47 cd03294 ABC_Pro_Gly_Bertaine T 55.9 5 0.00013 21.6 1.0 19 1-19 56-74 (269)
48 PRK08233 hypothetical protein; 55.9 6.3 0.00016 21.0 1.5 15 2-16 10-24 (182)
49 TIGR02195 heptsyl_trn_II lipop 55.6 6.5 0.00017 20.9 1.5 24 6-30 259-282 (361)
50 cd03298 ABC_ThiQ_thiamine_tran 55.0 5.5 0.00014 21.3 1.1 18 1-18 30-47 (211)
51 cd04161 Arl2l1_Arl13_like Arl2 54.9 5.5 0.00014 21.3 1.1 15 1-15 5-19 (167)
52 COG1126 GlnQ ABC-type polar am 54.7 6.3 0.00016 21.0 1.3 20 1-20 34-53 (240)
53 cd03261 ABC_Org_Solvent_Resist 54.3 5.9 0.00015 21.2 1.1 18 1-18 32-49 (235)
54 cd03256 ABC_PhnC_transporter A 53.9 6 0.00015 21.1 1.1 18 1-18 33-50 (241)
55 cd04168 TetM_like Tet(M)-like 53.8 7.1 0.00018 20.7 1.5 21 1-21 5-25 (237)
56 pfam09439 SRPRB Signal recogni 53.7 6.6 0.00017 20.9 1.3 21 1-22 9-29 (181)
57 cd03300 ABC_PotA_N PotA is an 53.6 6.2 0.00016 21.1 1.1 18 1-18 32-49 (232)
58 TIGR03258 PhnT 2-aminoethylpho 52.1 6.5 0.00017 20.9 1.1 18 1-18 37-54 (362)
59 cd03240 ABC_Rad50 The catalyti 51.9 7.1 0.00018 20.7 1.2 16 1-16 28-43 (204)
60 TIGR02324 CP_lyasePhnL phospho 51.9 8 0.0002 20.4 1.5 17 1-17 40-56 (224)
61 cd03293 ABC_NrtD_SsuB_transpor 51.9 6.5 0.00017 20.9 1.0 18 1-18 36-53 (220)
62 TIGR03265 PhnT2 putative 2-ami 51.3 6.8 0.00017 20.8 1.0 18 1-18 36-53 (353)
63 cd04157 Arl6 Arl6 subfamily. 50.6 7.7 0.0002 20.5 1.2 15 1-15 5-19 (162)
64 cd03255 ABC_MJ0796_Lo1CDE_FtsE 50.5 7.2 0.00018 20.7 1.1 18 1-18 36-53 (218)
65 TIGR00618 sbcc exonuclease Sbc 50.3 9.7 0.00025 20.0 1.7 19 2-20 37-57 (1063)
66 PRK13544 consensus 50.2 7.9 0.0002 20.5 1.2 18 1-18 33-50 (208)
67 PRK11629 lolD lipoprotein tran 50.2 7.6 0.00019 20.6 1.2 18 1-18 41-58 (233)
68 cd02024 NRK1 Nicotinamide ribo 50.0 8.9 0.00023 20.2 1.5 15 2-16 6-20 (187)
69 cd03257 ABC_NikE_OppD_transpor 50.0 7.4 0.00019 20.6 1.1 18 1-18 37-54 (228)
70 cd03279 ABC_sbcCD SbcCD and ot 49.7 9.8 0.00025 20.0 1.7 23 2-24 35-59 (213)
71 smart00178 SAR Sar1p-like memb 49.5 8 0.0002 20.5 1.2 16 1-16 23-38 (184)
72 cd04105 SR_beta Signal recogni 49.4 6.3 0.00016 21.0 0.6 30 1-31 6-35 (203)
73 cd03292 ABC_FtsE_transporter F 49.4 7.8 0.0002 20.5 1.1 18 1-18 33-50 (214)
74 cd03233 ABC_PDR_domain1 The pl 49.2 8.3 0.00021 20.4 1.2 16 1-16 39-54 (202)
75 TIGR00073 hypB hydrogenase acc 48.9 8 0.0002 20.5 1.1 17 1-17 40-56 (225)
76 cd03229 ABC_Class3 This class 48.8 8.1 0.00021 20.4 1.1 18 1-18 32-49 (178)
77 PRK09493 glnQ glutamine ABC tr 48.7 8.3 0.00021 20.4 1.2 18 1-18 33-50 (240)
78 KOG0073 consensus 48.4 8.5 0.00022 20.3 1.2 15 1-15 22-36 (185)
79 cd03299 ABC_ModC_like Archeal 48.2 8.1 0.00021 20.4 1.0 18 1-18 31-48 (235)
80 cd03290 ABCC_SUR1_N The SUR do 48.1 8.9 0.00023 20.2 1.3 18 1-18 33-50 (218)
81 COG3839 MalK ABC-type sugar tr 47.9 9.3 0.00024 20.1 1.3 17 1-17 35-51 (338)
82 cd01890 LepA LepA subfamily. 47.9 12 0.0003 19.6 1.8 18 1-18 6-23 (179)
83 COG4107 PhnK ABC-type phosphon 47.8 9.4 0.00024 20.1 1.3 15 2-16 39-53 (258)
84 cd04162 Arl9_Arfrp2_like Arl9/ 47.5 9 0.00023 20.2 1.2 15 1-15 5-19 (164)
85 TIGR02673 FtsE cell division A 47.4 10 0.00027 19.8 1.5 16 2-17 35-50 (215)
86 cd03258 ABC_MetN_methionine_tr 47.2 8.4 0.00021 20.3 1.0 17 1-17 37-53 (233)
87 cd04150 Arf1_5_like Arf1-Arf5- 47.2 9.4 0.00024 20.1 1.2 20 1-21 6-25 (159)
88 PRK10619 histidine/lysine/argi 47.1 9 0.00023 20.2 1.1 18 1-18 37-54 (257)
89 PRK11248 tauB taurine transpor 46.8 8.7 0.00022 20.2 1.0 18 1-18 33-50 (255)
90 PRK13547 hmuV hemin importer A 46.8 8.9 0.00023 20.2 1.1 16 1-16 33-48 (273)
91 TIGR02868 CydC ABC transporter 46.7 11 0.00029 19.7 1.6 23 1-23 393-415 (566)
92 cd03296 ABC_CysA_sulfate_impor 46.2 9 0.00023 20.2 1.0 18 1-18 34-51 (239)
93 PRK10419 nikE nickel transport 46.0 9.1 0.00023 20.2 1.0 47 1-54 44-90 (266)
94 cd03238 ABC_UvrA The excision 45.4 11 0.00028 19.7 1.3 17 1-17 27-43 (176)
95 cd03213 ABCG_EPDR ABCG transpo 45.4 9.8 0.00025 20.0 1.1 16 1-16 41-56 (194)
96 cd03226 ABC_cobalt_CbiO_domain 45.3 11 0.00027 19.8 1.3 18 1-18 32-49 (205)
97 cd03260 ABC_PstB_phosphate_tra 45.2 10 0.00026 19.9 1.2 19 1-19 32-50 (227)
98 COG0529 CysC Adenylylsulfate k 45.1 12 0.0003 19.6 1.5 15 1-15 29-43 (197)
99 TIGR01193 bacteriocin_ABC ABC- 44.8 8.6 0.00022 20.3 0.7 19 1-19 506-524 (710)
100 COG4148 ModC ABC-type molybdat 44.7 11 0.00028 19.7 1.3 16 1-16 30-45 (352)
101 TIGR03269 met_CoM_red_A2 methy 44.7 11 0.00029 19.6 1.4 14 2-15 33-46 (520)
102 cd00879 Sar1 Sar1 subfamily. 44.6 10 0.00026 19.9 1.1 16 1-16 25-40 (190)
103 KOG0065 consensus 44.6 12 0.0003 19.6 1.4 14 1-14 823-836 (1391)
104 COG3638 ABC-type phosphate/pho 44.5 12 0.00031 19.5 1.5 17 1-17 36-52 (258)
105 COG1106 Predicted ATPases [Gen 44.4 14 0.00036 19.1 1.8 27 2-28 29-55 (371)
106 PRK09825 idnK D-gluconate kina 44.3 11 0.00028 19.8 1.2 15 1-15 9-23 (176)
107 PRK11264 putative amino-acid A 44.2 11 0.00028 19.8 1.2 17 1-17 33-49 (248)
108 cd03223 ABCD_peroxisomal_ALDP 43.6 11 0.00029 19.7 1.2 16 1-16 33-48 (166)
109 COG3910 Predicted ATPase [Gene 43.6 13 0.00032 19.4 1.5 16 2-17 44-59 (233)
110 cd03231 ABC_CcmA_heme_exporter 43.5 12 0.00029 19.6 1.2 18 1-18 32-49 (201)
111 PRK10463 hydrogenase nickel in 43.4 13 0.00034 19.3 1.5 16 1-16 110-125 (290)
112 cd03278 ABC_SMC_barmotin Barmo 43.3 12 0.0003 19.6 1.2 21 1-21 28-49 (197)
113 PRK10851 sulfate/thiosulfate t 43.1 11 0.00028 19.7 1.0 18 1-18 34-51 (352)
114 cd03224 ABC_TM1139_LivF_branch 42.9 13 0.00032 19.4 1.3 18 1-18 32-49 (222)
115 TIGR02211 LolD_lipo_ex lipopro 42.5 10 0.00027 19.8 0.9 38 1-47 37-76 (221)
116 PRK11701 phnK phosphonates tra 42.3 13 0.00032 19.4 1.3 17 1-17 38-54 (258)
117 PRK10584 putative ABC transpor 41.9 11 0.00029 19.7 1.0 18 1-18 42-59 (228)
118 cd03253 ABCC_ATM1_transporter 41.8 13 0.00032 19.4 1.2 18 1-18 33-50 (236)
119 CHL00131 ycf16 sulfate ABC tra 41.8 13 0.00032 19.4 1.2 17 1-17 38-54 (252)
120 PRK09580 sufC cysteine desulfu 41.5 13 0.00033 19.3 1.2 17 1-17 33-49 (248)
121 cd03271 ABC_UvrA_II The excisi 41.4 15 0.00038 19.0 1.5 16 1-16 27-42 (261)
122 PRK10771 thiQ thiamine transpo 41.4 13 0.00032 19.4 1.1 18 1-18 31-48 (233)
123 pfam00485 PRK Phosphoribulokin 41.2 27 0.00068 17.7 2.8 15 2-16 6-20 (196)
124 smart00177 ARF ARF-like small 41.1 13 0.00034 19.3 1.2 19 1-20 19-37 (175)
125 TIGR00972 3a0107s01c2 phosphat 41.1 14 0.00035 19.2 1.3 47 1-71 33-79 (248)
126 PRK13548 hmuV hemin importer A 40.6 13 0.00034 19.2 1.2 16 1-16 34-49 (257)
127 cd04155 Arl3 Arl3 subfamily. 40.5 14 0.00034 19.2 1.2 16 1-16 20-35 (173)
128 cd03214 ABC_Iron-Siderophores_ 40.5 14 0.00035 19.2 1.2 19 1-19 31-49 (180)
129 cd00066 G-alpha G protein alph 40.3 15 0.00038 19.0 1.4 15 1-15 6-20 (317)
130 PRK10895 putative ABC transpor 40.3 15 0.00038 19.0 1.4 18 1-18 35-52 (241)
131 COG1118 CysA ABC-type sulfate/ 40.3 15 0.00039 18.9 1.5 16 1-16 34-49 (345)
132 cd03232 ABC_PDR_domain2 The pl 40.1 14 0.00036 19.2 1.2 16 1-16 39-54 (192)
133 PRK13538 cytochrome c biogenes 40.0 14 0.00036 19.2 1.2 17 1-17 33-49 (204)
134 cd03225 ABC_cobalt_CbiO_domain 40.0 15 0.00037 19.1 1.3 17 1-17 33-49 (211)
135 pfam12128 DUF3584 Protein of u 39.8 18 0.00046 18.6 1.8 25 2-26 24-48 (1192)
136 PRK07429 phosphoribulokinase; 39.8 20 0.00051 18.3 2.0 29 2-30 15-44 (331)
137 cd03217 ABC_FeS_Assembly ABC-t 39.8 14 0.00036 19.2 1.2 16 1-16 32-47 (200)
138 cd03369 ABCC_NFT1 Domain 2 of 39.8 17 0.00043 18.8 1.6 20 1-20 40-59 (207)
139 PRK11545 gntK gluconate kinase 39.8 14 0.00037 19.1 1.3 15 1-15 14-28 (177)
140 cd02023 UMPK Uridine monophosp 39.7 16 0.00041 18.8 1.5 15 2-16 6-20 (198)
141 cd03228 ABCC_MRP_Like The MRP 39.7 14 0.00037 19.1 1.3 18 1-18 34-51 (171)
142 PRK10908 cell division protein 39.6 13 0.00033 19.3 1.0 18 1-18 34-51 (222)
143 pfam04670 Gtr1_RagA Gtr1/RagA 39.6 16 0.00041 18.9 1.4 33 1-33 5-40 (230)
144 PRK13543 cytochrome c biogenes 39.1 15 0.00038 19.0 1.2 16 1-16 43-58 (214)
145 cd03219 ABC_Mj1267_LivG_branch 38.9 15 0.0004 18.9 1.3 17 1-17 32-48 (236)
146 PRK11432 fbpC ferric transport 38.7 13 0.00033 19.3 0.9 18 1-18 38-55 (351)
147 COG1125 OpuBA ABC-type proline 38.7 17 0.00043 18.7 1.5 18 1-18 33-50 (309)
148 PRK13634 cbiO cobalt transport 38.7 13 0.00034 19.3 0.9 17 1-17 26-42 (276)
149 PRK09984 phosphonate/organopho 38.7 15 0.00037 19.1 1.1 18 1-18 36-53 (262)
150 PRK13539 cytochrome c biogenes 38.6 17 0.00042 18.8 1.4 19 1-19 34-52 (206)
151 PRK11124 artP arginine transpo 38.1 15 0.00039 18.9 1.2 17 1-17 34-50 (242)
152 cd04151 Arl1 Arl1 subfamily. 38.0 16 0.0004 18.9 1.2 20 1-21 5-24 (158)
153 PRK11831 putative ABC transpor 37.9 15 0.00039 19.0 1.1 17 1-17 40-56 (269)
154 KOG0076 consensus 37.8 15 0.00037 19.1 1.0 16 1-16 23-38 (197)
155 cd04149 Arf6 Arf6 subfamily. 37.7 16 0.00041 18.8 1.2 19 1-20 15-33 (168)
156 pfam07931 CPT Chloramphenicol 37.7 18 0.00047 18.5 1.5 29 2-30 8-36 (174)
157 COG1127 Ttg2A ABC-type transpo 37.7 16 0.00042 18.8 1.3 16 1-16 40-55 (263)
158 cd03250 ABCC_MRP_domain1 Domai 37.6 16 0.00041 18.9 1.2 16 1-16 37-52 (204)
159 KOG0635 consensus 37.6 21 0.00054 18.2 1.8 39 1-39 37-78 (207)
160 PRK13549 xylose transporter AT 37.6 18 0.00046 18.6 1.5 16 1-16 294-309 (513)
161 cd02028 UMPK_like Uridine mono 37.6 18 0.00047 18.5 1.5 15 2-16 6-20 (179)
162 PRK10575 iron-hydroxamate tran 37.4 16 0.0004 18.9 1.2 16 1-16 43-58 (265)
163 cd04158 ARD1 ARD1 subfamily. 37.4 16 0.00042 18.8 1.2 15 1-15 5-19 (169)
164 cd00227 CPT Chloramphenicol (C 37.4 19 0.00048 18.5 1.5 29 2-30 9-37 (175)
165 PTZ00133 ADP-ribosylation fact 37.3 16 0.00042 18.8 1.2 20 1-21 23-42 (182)
166 cd03230 ABC_DR_subfamily_A Thi 37.2 17 0.00043 18.7 1.3 17 1-17 32-48 (173)
167 PRK09544 znuC high-affinity zi 37.2 17 0.00044 18.7 1.3 18 1-18 36-53 (251)
168 cd04153 Arl5_Arl8 Arl5/Arl8 su 37.2 17 0.00042 18.8 1.2 19 1-20 21-39 (174)
169 PRK05480 uridine kinase; Provi 37.1 19 0.00048 18.5 1.5 15 2-16 13-27 (209)
170 COG0572 Udk Uridine kinase [Nu 37.0 19 0.00048 18.5 1.5 18 2-19 15-33 (218)
171 PRK03695 vitamin B12-transport 36.9 16 0.00042 18.8 1.2 16 1-16 29-44 (245)
172 PRK11231 fecE iron-dicitrate t 36.9 16 0.00041 18.8 1.1 18 1-18 34-51 (255)
173 PRK11153 metN DL-methionine tr 36.6 16 0.00041 18.9 1.1 18 1-18 37-54 (343)
174 PRK07667 uridine kinase; Provi 36.6 19 0.00049 18.4 1.5 15 2-16 21-35 (190)
175 PRK11300 livG leucine/isoleuci 36.3 20 0.00052 18.3 1.6 18 1-18 37-54 (255)
176 PRK13646 cbiO cobalt transport 36.2 17 0.00043 18.7 1.1 16 1-16 39-54 (286)
177 cd01130 VirB11-like_ATPase Typ 36.2 23 0.00058 18.0 1.8 17 2-18 32-48 (186)
178 PRK10938 putative molybdenum t 36.0 18 0.00046 18.6 1.3 16 1-16 292-307 (490)
179 TIGR02525 plasmid_TraJ plasmid 35.8 23 0.0006 18.0 1.8 37 2-38 156-196 (374)
180 PRK10247 putative ABC transpor 35.7 18 0.00046 18.6 1.2 18 1-18 39-56 (225)
181 pfam06395 CDC24 CDC24 Calponin 35.7 25 0.00064 17.8 2.0 38 11-51 42-79 (89)
182 PRK13541 cytochrome c biogenes 35.6 18 0.00046 18.6 1.2 17 1-17 32-48 (195)
183 cd03236 ABC_RNaseL_inhibitor_d 35.5 18 0.00047 18.5 1.2 17 1-17 32-48 (255)
184 cd01891 TypA_BipA TypA (tyrosi 35.5 18 0.00045 18.6 1.1 17 1-17 8-24 (194)
185 cd04154 Arl2 Arl2 subfamily. 35.4 18 0.00046 18.6 1.2 15 1-15 20-34 (173)
186 PRK10982 galactose/methyl gala 35.4 20 0.0005 18.4 1.4 16 1-16 280-295 (491)
187 PRK11288 araG L-arabinose tran 35.4 18 0.00045 18.6 1.2 16 1-16 285-300 (501)
188 PRK13637 cbiO cobalt transport 35.1 16 0.00041 18.8 0.9 16 1-16 39-54 (287)
189 PRK11650 ugpC glycerol-3-phosp 35.1 17 0.00044 18.7 1.0 18 1-18 36-53 (358)
190 PRK13632 cbiO cobalt transport 35.0 17 0.00045 18.6 1.1 16 1-16 42-57 (273)
191 PRK13650 cbiO cobalt transport 35.0 17 0.00044 18.7 1.0 18 1-18 36-53 (276)
192 cd00881 GTP_translation_factor 35.0 20 0.0005 18.4 1.3 18 1-18 5-22 (189)
193 PRK02224 chromosome segregatio 34.8 25 0.00063 17.8 1.8 19 2-20 30-50 (880)
194 cd03263 ABC_subfamily_A The AB 34.8 19 0.00048 18.5 1.2 17 1-17 34-50 (220)
195 PRK11614 livF leucine/isoleuci 34.8 20 0.00052 18.3 1.4 18 1-18 37-54 (237)
196 pfam02492 cobW CobW/HypB/UreG, 34.5 21 0.00054 18.2 1.4 17 1-17 6-22 (174)
197 cd03245 ABCC_bacteriocin_expor 34.3 19 0.00049 18.4 1.2 19 1-19 36-54 (220)
198 PRK09452 potA putrescine/sperm 34.3 18 0.00046 18.5 1.1 18 1-18 49-66 (378)
199 cd03239 ABC_SMC_head The struc 34.2 26 0.00065 17.8 1.8 23 2-24 29-52 (178)
200 cd03246 ABCC_Protease_Secretio 34.2 19 0.00049 18.4 1.2 18 1-18 34-51 (173)
201 cd00267 ABC_ATPase ABC (ATP-bi 34.0 21 0.00053 18.3 1.3 18 1-18 31-48 (157)
202 cd03251 ABCC_MsbA MsbA is an e 33.6 22 0.00057 18.1 1.4 19 1-19 34-52 (234)
203 PRK13644 cbiO cobalt transport 33.3 20 0.00051 18.3 1.2 17 1-17 34-50 (274)
204 PRK13631 cbiO cobalt transport 33.3 20 0.00052 18.3 1.2 17 1-17 58-74 (320)
205 cd03244 ABCC_MRP_domain2 Domai 33.1 22 0.00057 18.1 1.3 18 1-18 36-53 (221)
206 cd03254 ABCC_Glucan_exporter_l 33.1 23 0.00059 18.0 1.4 19 1-19 35-53 (229)
207 cd02026 PRK Phosphoribulokinas 33.0 30 0.00077 17.4 2.0 28 2-29 6-34 (273)
208 cd03247 ABCC_cytochrome_bd The 33.0 20 0.00051 18.3 1.1 17 1-17 34-50 (178)
209 cd03295 ABC_OpuCA_Osmoprotecti 32.9 20 0.0005 18.4 1.1 18 1-18 33-50 (242)
210 PRK13540 cytochrome c biogenes 32.8 22 0.00056 18.1 1.3 18 1-18 33-50 (200)
211 PRK10253 iron-enterobactin tra 32.6 19 0.00048 18.5 0.9 18 1-18 39-56 (265)
212 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 32.4 21 0.00054 18.2 1.1 17 1-17 54-70 (224)
213 PRK11000 maltose/maltodextrin 32.1 21 0.00052 18.3 1.0 18 1-18 35-52 (369)
214 PRK13638 cbiO cobalt transport 32.0 22 0.00056 18.1 1.2 17 1-17 33-49 (271)
215 KOG0090 consensus 32.0 10 0.00026 19.9 -0.5 13 1-13 44-56 (238)
216 cd03259 ABC_Carb_Solutes_like 31.8 23 0.00059 18.0 1.2 19 1-19 32-50 (213)
217 TIGR02788 VirB11 P-type DNA tr 31.8 24 0.0006 17.9 1.3 34 2-35 165-208 (328)
218 pfam01580 FtsK_SpoIIIE FtsK/Sp 31.8 50 0.0013 16.2 3.0 32 2-36 45-76 (202)
219 PRK11607 potG putrescine trans 31.7 21 0.00052 18.3 1.0 18 1-18 51-68 (377)
220 PRK13642 cbiO cobalt transport 31.6 21 0.00053 18.2 1.0 16 1-16 39-54 (277)
221 cd03237 ABC_RNaseL_inhibitor_d 31.5 21 0.00055 18.2 1.0 16 1-16 31-46 (246)
222 PRK13635 cbiO cobalt transport 31.5 22 0.00056 18.1 1.1 17 1-17 39-55 (279)
223 pfam00025 Arf ADP-ribosylation 31.4 23 0.0006 18.0 1.2 15 1-15 20-34 (174)
224 pfam00503 G-alpha G-protein al 31.4 24 0.00062 17.9 1.3 13 2-14 35-47 (350)
225 PRK13833 conjugal transfer pro 31.3 25 0.00065 17.8 1.4 17 2-18 151-167 (323)
226 PRK13633 cobalt transporter AT 31.3 22 0.00057 18.1 1.1 16 1-16 43-58 (281)
227 COG1124 DppF ABC-type dipeptid 31.3 24 0.00061 17.9 1.3 18 1-18 39-56 (252)
228 cd00878 Arf_Arl Arf (ADP-ribos 31.2 24 0.00061 17.9 1.2 15 1-15 5-19 (158)
229 pfam00437 GSPII_E Type II/IV s 31.0 32 0.00081 17.3 1.8 49 2-57 146-196 (283)
230 cd03215 ABC_Carb_Monos_II This 31.0 22 0.00055 18.1 1.0 19 1-19 32-50 (182)
231 PTZ00301 uridine kinase; Provi 30.7 27 0.0007 17.6 1.5 15 2-16 10-24 (210)
232 PRK13648 cbiO cobalt transport 30.5 25 0.00063 17.8 1.2 17 1-17 41-57 (269)
233 PRK09473 oppD oligopeptide tra 30.4 25 0.00063 17.8 1.2 17 1-17 48-64 (330)
234 COG3265 GntK Gluconate kinase 30.4 29 0.00075 17.4 1.6 15 1-15 1-15 (161)
235 cd03248 ABCC_TAP TAP, the Tran 30.2 24 0.00061 17.9 1.1 18 1-18 46-63 (226)
236 cd03249 ABC_MTABC3_MDL1_MDL2 M 30.1 29 0.00073 17.5 1.5 18 1-18 35-52 (238)
237 PRK01156 chromosome segregatio 30.1 33 0.00084 17.2 1.8 20 2-21 30-51 (895)
238 PRK11247 ssuB aliphatic sulfon 30.0 23 0.00058 18.0 1.0 18 1-18 44-61 (257)
239 PRK06696 uridine kinase; Valid 30.0 29 0.00074 17.5 1.5 15 2-16 33-47 (227)
240 TIGR03411 urea_trans_UrtD urea 29.8 31 0.00078 17.3 1.6 17 1-17 34-50 (242)
241 PRK11308 dppF dipeptide transp 29.7 22 0.00055 18.1 0.8 18 1-18 47-64 (327)
242 pfam01293 PEPCK_ATP Phosphoeno 29.7 28 0.00072 17.5 1.4 11 1-11 216-226 (451)
243 cd03289 ABCC_CFTR2 The CFTR su 29.6 28 0.0007 17.6 1.3 18 1-18 36-53 (275)
244 PRK06217 hypothetical protein; 29.6 28 0.00071 17.6 1.4 22 1-25 7-28 (185)
245 PRK13651 cobalt transporter AT 29.4 27 0.00069 17.6 1.3 16 1-16 39-54 (304)
246 COG3593 Predicted ATP-dependen 29.3 37 0.00095 16.9 2.0 37 1-44 29-66 (581)
247 PRK13546 teichoic acids export 29.3 26 0.00065 17.8 1.1 16 1-16 56-71 (264)
248 COG0378 HypB Ni2+-binding GTPa 29.2 31 0.00078 17.3 1.5 16 1-16 19-34 (202)
249 cd03291 ABCC_CFTR1 The CFTR su 29.0 31 0.00079 17.3 1.5 18 1-18 69-86 (282)
250 PRK13647 cbiO cobalt transport 28.8 26 0.00066 17.7 1.1 17 1-17 37-53 (273)
251 smart00275 G_alpha G protein a 28.8 29 0.00073 17.5 1.3 15 1-15 27-41 (342)
252 cd03218 ABC_YhbG The ABC trans 28.8 27 0.00069 17.6 1.2 18 1-18 32-49 (232)
253 PRK13900 type IV secretion sys 28.5 32 0.00081 17.2 1.5 34 2-35 167-210 (332)
254 cd03227 ABC_Class2 ABC-type Cl 28.4 28 0.00072 17.5 1.2 15 2-16 28-42 (162)
255 PRK13645 cbiO cobalt transport 28.2 26 0.00067 17.7 1.0 16 1-16 43-58 (289)
256 cd03216 ABC_Carb_Monos_I This 28.2 29 0.00073 17.5 1.2 17 1-17 32-48 (163)
257 COG1120 FepC ABC-type cobalami 28.1 32 0.00083 17.2 1.5 16 2-17 35-50 (258)
258 cd03221 ABCF_EF-3 ABCF_EF-3 E 28.0 28 0.00072 17.5 1.2 16 1-16 32-47 (144)
259 PRK12312 infB translation init 27.9 29 0.00074 17.5 1.2 19 7-25 266-284 (610)
260 PRK10744 phosphate transporter 27.9 29 0.00073 17.5 1.2 18 1-18 42-59 (257)
261 PRK11819 putative ABC transpor 27.8 31 0.00078 17.3 1.3 14 2-15 357-370 (556)
262 PRK10762 D-ribose transporter 27.7 32 0.00081 17.3 1.4 16 1-16 284-299 (501)
263 cd04160 Arfrp1 Arfrp1 subfamil 27.7 33 0.00085 17.1 1.5 15 1-15 5-19 (167)
264 COG1116 TauB ABC-type nitrate/ 27.6 34 0.00086 17.1 1.5 18 1-18 35-52 (248)
265 PRK09536 btuD corrinoid ABC tr 27.6 28 0.00072 17.5 1.1 17 1-17 34-50 (409)
266 TIGR02858 spore_III_AA stage I 27.5 25 0.00064 17.8 0.8 19 3-28 131-149 (282)
267 COG4962 CpaF Flp pilus assembl 27.4 36 0.00091 17.0 1.6 35 4-39 182-226 (355)
268 cd03252 ABCC_Hemolysin The ABC 27.2 33 0.00083 17.2 1.4 18 1-18 34-51 (237)
269 TIGR02782 TrbB_P P-type conjug 27.1 35 0.0009 17.0 1.5 15 2-16 146-160 (315)
270 PRK13640 cbiO cobalt transport 27.0 28 0.00073 17.5 1.0 16 1-16 40-55 (283)
271 PRK04004 translation initiatio 27.0 31 0.00079 17.3 1.2 16 1-16 11-26 (592)
272 PRK13639 cbiO cobalt transport 26.7 30 0.00076 17.4 1.1 16 1-16 34-49 (275)
273 PRK13652 cbiO cobalt transport 26.5 29 0.00075 17.5 1.0 17 1-17 36-52 (277)
274 CHL00189 infB translation init 26.4 31 0.0008 17.3 1.2 20 6-25 424-443 (770)
275 pfam00009 GTP_EFTU Elongation 26.3 33 0.00084 17.2 1.3 17 1-17 9-25 (185)
276 TIGR02322 phosphon_PhnN phosph 26.2 30 0.00077 17.4 1.1 28 1-35 7-34 (183)
277 PRK06761 hypothetical protein; 26.1 58 0.0015 15.9 2.5 33 2-39 9-41 (281)
278 COG3911 Predicted ATPase [Gene 26.1 38 0.00097 16.8 1.5 21 2-22 16-36 (183)
279 PRK13641 cbiO cobalt transport 26.0 29 0.00073 17.5 0.9 16 1-16 39-54 (286)
280 pfam10089 consensus 26.0 65 0.0016 15.6 2.7 33 45-77 10-44 (47)
281 PRK13851 type IV secretion sys 25.9 41 0.001 16.7 1.7 17 2-18 169-185 (343)
282 PRK07560 elongation factor EF- 25.7 38 0.00097 16.8 1.5 18 2-19 27-44 (730)
283 cd03112 CobW_like The function 25.3 37 0.00095 16.9 1.4 15 2-16 7-21 (158)
284 PRK13636 cbiO cobalt transport 25.2 34 0.00086 17.1 1.2 17 1-17 38-54 (285)
285 TIGR03410 urea_trans_UrtE urea 25.1 34 0.00086 17.1 1.1 18 1-18 32-49 (230)
286 PRK11022 dppD dipeptide transp 25.1 36 0.00092 17.0 1.3 17 1-17 39-55 (327)
287 pfam03205 MobB Molybdopterin g 25.1 40 0.001 16.8 1.5 33 2-39 7-39 (122)
288 PRK09700 D-allose transporter 25.0 37 0.00094 16.9 1.3 17 1-17 295-311 (510)
289 TIGR02857 CydD ABC transporter 24.9 38 0.00096 16.9 1.3 21 1-21 384-404 (570)
290 KOG0525 consensus 24.8 43 0.0011 16.5 1.6 40 4-43 33-73 (362)
291 PRK13542 consensus 24.7 36 0.00093 16.9 1.2 18 1-18 50-67 (224)
292 cd04171 SelB SelB subfamily. 24.6 34 0.00087 17.1 1.1 15 1-15 6-20 (164)
293 cd03267 ABC_NatA_like Similar 24.6 35 0.00089 17.0 1.1 17 1-17 53-69 (236)
294 cd04156 ARLTS1 ARLTS1 subfamil 24.6 37 0.00094 16.9 1.2 20 1-21 5-24 (160)
295 COG1131 CcmA ABC-type multidru 24.5 38 0.00097 16.8 1.3 17 1-17 37-53 (293)
296 cd03235 ABC_Metallic_Cations A 24.4 37 0.00094 16.9 1.2 17 1-17 31-47 (213)
297 TIGR02528 EutP ethanolamine ut 24.3 27 0.00069 17.6 0.5 14 1-14 6-19 (144)
298 PRK13643 cbiO cobalt transport 24.1 35 0.00088 17.1 1.0 16 1-16 38-53 (288)
299 PRK05306 infB translation init 23.7 39 0.001 16.8 1.3 20 6-25 490-509 (839)
300 COG4178 ABC-type uncharacteriz 23.7 41 0.0011 16.7 1.4 16 1-16 425-440 (604)
301 PRK13894 conjugal transfer ATP 23.5 44 0.0011 16.5 1.5 15 2-16 156-170 (320)
302 PRK10261 glutathione transport 23.4 43 0.0011 16.6 1.4 15 2-16 357-371 (623)
303 COG4391 Uncharacterized protei 23.4 35 0.0009 17.0 1.0 11 67-77 34-44 (62)
304 COG4525 TauB ABC-type taurine 23.2 42 0.0011 16.6 1.3 18 1-18 37-54 (259)
305 cd03266 ABC_NatA_sodium_export 23.0 41 0.001 16.7 1.2 18 1-18 37-54 (218)
306 TIGR02323 CP_lyasePhnK phospho 22.9 41 0.0011 16.6 1.2 17 1-17 34-50 (251)
307 pfam01893 UPF0058 Uncharacteri 22.9 37 0.00095 16.9 1.0 25 7-31 45-69 (88)
308 cd04159 Arl10_like Arl10-like 22.9 41 0.001 16.7 1.2 15 1-15 5-19 (159)
309 cd01887 IF2_eIF5B IF2/eIF5B (i 22.7 39 0.00098 16.8 1.0 15 1-15 6-20 (168)
310 PRK06547 hypothetical protein; 22.6 48 0.0012 16.3 1.5 33 2-43 22-54 (184)
311 PRK13649 cbiO cobalt transport 22.6 39 0.00099 16.8 1.0 16 1-16 39-54 (280)
312 cd03269 ABC_putative_ATPase Th 22.4 42 0.0011 16.6 1.2 17 1-17 32-48 (210)
313 cd01883 EF1_alpha Eukaryotic e 22.4 45 0.0011 16.5 1.3 18 1-18 5-22 (219)
314 TIGR00224 pckA phosphoenolpyru 22.4 27 0.0007 17.6 0.2 10 2-11 250-259 (549)
315 cd03288 ABCC_SUR2 The SUR doma 22.3 48 0.0012 16.3 1.5 18 1-18 53-70 (257)
316 cd01885 EF2 EF2 (for archaea a 22.1 47 0.0012 16.3 1.4 17 1-17 6-22 (222)
317 cd03268 ABC_BcrA_bacitracin_re 22.0 52 0.0013 16.1 1.6 18 1-18 32-49 (208)
318 TIGR03420 DnaA_homol_Hda DnaA 21.6 52 0.0013 16.1 1.5 15 2-16 45-59 (226)
319 PRK10078 ribose 1,5-bisphospho 21.6 55 0.0014 16.0 1.6 17 2-18 9-25 (184)
320 PRK10789 putative multidrug tr 21.5 57 0.0015 15.9 1.7 20 1-20 347-366 (569)
321 pfam09818 ABC_ATPase Predicted 21.4 43 0.0011 16.6 1.1 13 5-17 253-265 (447)
322 PRK10418 nikD nickel transport 21.4 42 0.0011 16.6 1.0 18 1-18 35-52 (254)
323 pfam09853 DUF2080 Putative tra 21.3 58 0.0015 15.9 1.7 27 44-73 11-37 (51)
324 PRK11176 lipid transporter ATP 21.3 61 0.0016 15.7 1.8 20 1-20 374-393 (581)
325 COG3840 ThiQ ABC-type thiamine 21.2 52 0.0013 16.1 1.5 42 1-42 31-85 (231)
326 KOG1145 consensus 21.1 43 0.0011 16.6 1.0 15 1-15 159-173 (683)
327 PRK07261 topology modulation p 20.7 50 0.0013 16.2 1.3 15 1-15 6-20 (171)
328 COG3950 Predicted ATP-binding 20.6 54 0.0014 16.0 1.4 16 2-17 31-46 (440)
329 pfam03983 SHD1 SLA1 homology d 20.4 45 0.0011 16.4 1.0 14 51-64 18-31 (70)
330 cd03264 ABC_drug_resistance_li 20.3 47 0.0012 16.3 1.1 17 1-17 31-47 (211)
331 PRK11147 ABC transporter ATPas 20.3 49 0.0013 16.3 1.2 14 2-15 36-49 (632)
332 cd03222 ABC_RNaseL_inhibitor T 20.2 53 0.0013 16.1 1.3 16 1-16 31-46 (177)
333 COG0630 VirB11 Type IV secreto 20.1 64 0.0016 15.6 1.7 19 2-20 150-168 (312)
334 cd00880 Era_like Era (E. coli 20.1 62 0.0016 15.7 1.6 27 1-30 2-28 (163)
335 cd01919 PEPCK Phosphoenolpyruv 20.1 38 0.00098 16.8 0.6 45 2-57 224-268 (515)
No 1
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=89.34 E-value=0.16 Score=29.50 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=19.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEE
Q ss_conf 9745445026899998743432101238812467
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVF 34 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpvsvf 34 (80)
.|.|.||||||++++-- .|.-.|-+|++-
T Consensus 5 ~G~k~SGKTtL~~~l~~-----~L~~~Gy~V~~I 33 (165)
T TIGR00176 5 VGYKNSGKTTLIERLVK-----ALKARGYRVATI 33 (165)
T ss_pred EEECCCCHHHHHHHHHH-----HHHCCCCCEEEE
T ss_conf 96258867899999999-----997079950898
No 2
>PRK00064 recF recombination protein F; Reviewed
Probab=84.13 E-value=0.62 Score=26.37 Aligned_cols=20 Identities=50% Similarity=0.775 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 74544502689999874343
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEA 21 (80)
Q Consensus 2 glsesgkttlleaiflfgea 21 (80)
|-.-+|||++||||++.+-.
T Consensus 30 G~NGsGKTnlLEAI~~L~~g 49 (355)
T PRK00064 30 GENGQGKTNLLEAIYLLAPG 49 (355)
T ss_pred CCCCCCHHHHHHHHHHHCCC
T ss_conf 99988889999999998489
No 3
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=84.05 E-value=0.61 Score=26.42 Aligned_cols=28 Identities=43% Similarity=0.554 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEECCC
Q ss_conf 7454450268999987434321012388
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALSND 29 (80)
Q Consensus 2 glsesgkttlleaiflfgealalalsnd 29 (80)
|-.-+|||.|||||++++-+-...-+.|
T Consensus 30 G~NgqGKTNlLEAI~~l~~grS~Rt~~~ 57 (363)
T COG1195 30 GENGQGKTNLLEAIYLLALGRSHRTSRD 57 (363)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 9898862899999999712567653014
No 4
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=83.05 E-value=0.54 Score=26.69 Aligned_cols=17 Identities=47% Similarity=0.628 Sum_probs=14.3
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 74544502689999874
Q gi|254781089|r 2 GLSESGKTTLLEAIFLF 18 (80)
Q Consensus 2 glsesgkttlleaiflf 18 (80)
|-|.||||||+|.+--.
T Consensus 9 G~k~SGKTTLie~lv~~ 25 (161)
T COG1763 9 GYKNSGKTTLIEKLVRK 25 (161)
T ss_pred ECCCCCHHHHHHHHHHH
T ss_conf 62799734289999999
No 5
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.70 E-value=0.9 Score=25.52 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 74544502689999874343210
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALAL 24 (80)
Q Consensus 2 glsesgkttlleaiflfgealal 24 (80)
|-.-+|||++||||++.+-.-..
T Consensus 28 G~NGsGKTnlLEAI~~ls~grSF 50 (270)
T cd03242 28 GENAQGKTNLLEAISLLATGKSH 50 (270)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99988789999999998179988
No 6
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=81.29 E-value=0.74 Score=25.96 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7454450268999987
Q gi|254781089|r 2 GLSESGKTTLLEAIFL 17 (80)
Q Consensus 2 glsesgkttlleaifl 17 (80)
|.|.||||||+|.+.-
T Consensus 9 G~s~SGKTTLi~kli~ 24 (170)
T PRK10751 9 AWSGTGKTTLLKKLIP 24 (170)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 4699999999999999
No 7
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=80.55 E-value=0.81 Score=25.76 Aligned_cols=16 Identities=56% Similarity=0.765 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
||-|-+|||||+.++-
T Consensus 64 mGsSGAGKTTLmn~La 79 (671)
T TIGR00955 64 MGSSGAGKTTLMNALA 79 (671)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 4787662689999985
No 8
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.06 E-value=0.75 Score=25.95 Aligned_cols=18 Identities=50% Similarity=0.682 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
||||-|||.||+..+--.
T Consensus 60 MGLSGSGKSTLvR~~NrL 77 (386)
T COG4175 60 MGLSGSGKSTLVRLLNRL 77 (386)
T ss_pred EECCCCCHHHHHHHHHCC
T ss_conf 935878788999997356
No 9
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=79.58 E-value=0.95 Score=25.40 Aligned_cols=14 Identities=71% Similarity=0.795 Sum_probs=12.3
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 74544502689999
Q gi|254781089|r 2 GLSESGKTTLLEAI 15 (80)
Q Consensus 2 glsesgkttlleai 15 (80)
|-|-|||||||.-|
T Consensus 38 GPSGSGKTTLLtLi 51 (220)
T TIGR02982 38 GPSGSGKTTLLTLI 51 (220)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 78898468899988
No 10
>KOG0061 consensus
Probab=79.25 E-value=0.93 Score=25.43 Aligned_cols=17 Identities=65% Similarity=0.675 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
||-|.|||||||+++--
T Consensus 62 mG~SGsGKtTLL~~Lag 78 (613)
T KOG0061 62 MGPSGSGKTTLLNALAG 78 (613)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 76888779999999957
No 11
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=76.30 E-value=0.6 Score=26.47 Aligned_cols=30 Identities=37% Similarity=0.465 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHC
Q ss_conf 97454450268999987434321012388124676102202
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFD 41 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpvsvflksdvfd 41 (80)
||+|-|||||+-+++ |- ..-.+|+.+|.|.
T Consensus 5 ~GvsGsGKSTia~~L-------a~----~lg~~~i~~D~~h 34 (150)
T cd02021 5 MGVSGSGKSTVGKAL-------AE----RLGAPFIDGDDLH 34 (150)
T ss_pred ECCCCCCHHHHHHHH-------HH----HHCCCEECCCCCC
T ss_conf 918999999999999-------99----7199564154335
No 12
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=76.21 E-value=1.3 Score=24.67 Aligned_cols=16 Identities=63% Similarity=0.785 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7454450268999987
Q gi|254781089|r 2 GLSESGKTTLLEAIFL 17 (80)
Q Consensus 2 glsesgkttlleaifl 17 (80)
|.|.||||||+|.+.-
T Consensus 8 G~snSGKTTLi~kli~ 23 (159)
T cd03116 8 GYSGSGKTTLLEKLIP 23 (159)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 6799999999999999
No 13
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=75.07 E-value=1.4 Score=24.46 Aligned_cols=15 Identities=60% Similarity=0.862 Sum_probs=12.4
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
||-|-.||||||.+.
T Consensus 859 MG~SGAGKTTLLn~L 873 (1466)
T TIGR00956 859 MGASGAGKTTLLNVL 873 (1466)
T ss_pred CCCCCCCHHHHHHHH
T ss_conf 578876357888644
No 14
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=74.64 E-value=1.5 Score=24.30 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEE
Q ss_conf 9745445026899998743432101238812467
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVF 34 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpvsvf 34 (80)
-|||-|||||+-.|. .-.|...-+++.
T Consensus 25 TGLSGsGKsTiA~Al-------~~~L~~~G~~~~ 51 (187)
T TIGR00455 25 TGLSGSGKSTIANAL-------EKKLEKKGYRVY 51 (187)
T ss_pred ECCCCCHHHHHHHHH-------HHHHHHCCCEEE
T ss_conf 168856357999999-------999996697499
No 15
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=72.39 E-value=2.1 Score=23.55 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHEECC--CCEEEEEEHHHH
Q ss_conf 5445026899998743432101238--812467610220
Q gi|254781089|r 4 SESGKTTLLEAIFLFGEALALALSN--DPVSVFLKSDVF 40 (80)
Q Consensus 4 sesgkttlleaiflfgealalalsn--dpvsvflksdvf 40 (80)
...||||+-|-+.|||.|.--|=+- .--.---|||-.
T Consensus 20 PDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM 58 (530)
T TIGR00503 20 PDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWM 58 (530)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 888742467888874256652244122001221221378
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=71.34 E-value=2.3 Score=23.33 Aligned_cols=20 Identities=45% Similarity=0.710 Sum_probs=16.8
Q ss_pred CCCCCCHHHHHHHHH--HHHHH
Q ss_conf 745445026899998--74343
Q gi|254781089|r 2 GLSESGKTTLLEAIF--LFGEA 21 (80)
Q Consensus 2 glsesgkttlleaif--lfgea 21 (80)
|-..|||||+++||. |||+.
T Consensus 30 G~nGsGKStIlDAI~~aL~g~~ 51 (882)
T PRK03918 30 GQNGSGKSSLLDAILVGLYWPL 51 (882)
T ss_pred CCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9999988999999999981898
No 17
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=70.98 E-value=2.1 Score=23.60 Aligned_cols=18 Identities=50% Similarity=0.691 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
||+|-|||||+..-|--.
T Consensus 25 ~GlSGsGKsT~vrmlNRL 42 (372)
T TIGR01186 25 MGLSGSGKSTLVRMLNRL 42 (372)
T ss_pred ECCCCCCHHHHHHHHHHC
T ss_conf 778998578999998722
No 18
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=70.81 E-value=1.9 Score=23.82 Aligned_cols=18 Identities=56% Similarity=0.735 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
||.|-|||||||..|--+
T Consensus 56 vGpSGsGKSTLLr~i~GL 73 (382)
T TIGR03415 56 MGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999973499999999759
No 19
>TIGR00611 recf DNA replication and repair protein RecF; InterPro: IPR001238 All proteins in this family, including recF, for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. RecF is involved in DNA metabolism and is required for recombinational DNA repair and for induction of the SOS response , . ; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=70.72 E-value=2.9 Score=22.85 Aligned_cols=30 Identities=37% Similarity=0.490 Sum_probs=23.2
Q ss_pred CCCCCCCH--HHHHHHHHHHHHHHHHEECCCC
Q ss_conf 97454450--2689999874343210123881
Q gi|254781089|r 1 MGLSESGK--TTLLEAIFLFGEALALALSNDP 30 (80)
Q Consensus 1 mglsesgk--ttlleaiflfgealalalsndp 30 (80)
.|..-+|| |.||||||..+-+-.---|+|-
T Consensus 42 ~G~NgqGKrPTnllEAiy~L~~~rShR~~~~~ 73 (399)
T TIGR00611 42 VGPNGQGKRPTNLLEAIYYLALGRSHRTSRDK 73 (399)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76788986407899999998744435442056
No 20
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=69.25 E-value=2.4 Score=23.28 Aligned_cols=17 Identities=47% Similarity=0.475 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
||-|-|||+|||..|-.
T Consensus 37 ~GpSGSGKSTLLniig~ 53 (226)
T COG1136 37 VGPSGSGKSTLLNLLGG 53 (226)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 89999989999999964
No 21
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=68.89 E-value=2.4 Score=23.21 Aligned_cols=16 Identities=50% Similarity=0.686 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.|+|-+||+|||..|=
T Consensus 34 IG~SGAGKSTLLR~iN 49 (253)
T TIGR02315 34 IGPSGAGKSTLLRCIN 49 (253)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 7378872679998775
No 22
>PRK00889 adenylylsulfate kinase; Provisional
Probab=68.10 E-value=4.8 Score=21.64 Aligned_cols=17 Identities=47% Similarity=0.559 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|||-|||||+-.++..
T Consensus 10 tGlsgSGKTTia~~l~~ 26 (175)
T PRK00889 10 TGLSGAGKTTISHALAE 26 (175)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 89899999999999999
No 23
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=67.90 E-value=2.7 Score=22.97 Aligned_cols=42 Identities=40% Similarity=0.509 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHEEC--CCCEEEEEEHHHH-----CCCCC
Q ss_conf 544502689999874343210123--8812467610220-----23113
Q gi|254781089|r 4 SESGKTTLLEAIFLFGEALALALS--NDPVSVFLKSDVF-----DGISK 45 (80)
Q Consensus 4 sesgkttlleaiflfgealalals--ndpvsvflksdvf-----dgisk 45 (80)
...|||||-|.+.|||.|...|=+ ..--+-+-+||-. .|||-
T Consensus 21 PDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISV 69 (528)
T COG4108 21 PDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISV 69 (528)
T ss_pred CCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEE
T ss_conf 8888511889999723034305501222577634227788887568558
No 24
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=67.25 E-value=3 Score=22.72 Aligned_cols=39 Identities=33% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHC-CCCC
Q ss_conf 97454450268999987434321012388124676102202-3113
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFD-GISK 45 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpvsvflksdvfd-gisk 45 (80)
.|||-|||||+-.++.-.-. -.+-+ .+.|..|.+- ++++
T Consensus 5 tGLsgsGKTTlA~~l~~~L~-----~~~~~-~~~lDGD~iR~~l~~ 44 (149)
T cd02027 5 TGLSGSGKSTIARALEEKLF-----QRGRP-VYVLDGDNVRHGLNK 44 (149)
T ss_pred ECCCCCCHHHHHHHHHHHHH-----HCCCC-EEEECCHHHHHHHCC
T ss_conf 79999999999999999999-----86997-599774889977365
No 25
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=67.06 E-value=3 Score=22.70 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 97454450268999987434321
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALA 23 (80)
Q Consensus 1 mglsesgkttlleaiflfgeala 23 (80)
+|-+.+|||||.|++.....+..
T Consensus 8 ~gH~gaGKTtL~EalL~~~G~i~ 30 (267)
T cd04169 8 ISHPDAGKTTLTEKLLLFGGAIR 30 (267)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 84799998999999998668633
No 26
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=66.42 E-value=3.1 Score=22.64 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|||-||||||-.++..
T Consensus 8 TGLsGsGKTTlA~~l~~ 24 (157)
T pfam01583 8 TGLSGSGKSTIANALER 24 (157)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 89899999999999999
No 27
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=64.75 E-value=3 Score=22.76 Aligned_cols=18 Identities=56% Similarity=0.741 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||||..|--.
T Consensus 32 vGpSGsGKSTLL~~i~gL 49 (213)
T cd03262 32 IGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999984499999999819
No 28
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=64.32 E-value=3.3 Score=22.48 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=25.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEE---CCCCEEEEEEHHHHCCCC
Q ss_conf 97454450268999987434321012---388124676102202311
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALAL---SNDPVSVFLKSDVFDGIS 44 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalal---sndpvsvflksdvfdgis 44 (80)
+|-+.+|||||.||+.....+..-.= ....++-|.....-.|||
T Consensus 5 ~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~is 51 (270)
T cd01886 5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGIT 51 (270)
T ss_pred EECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCE
T ss_conf 96899998899999998668735581553897556684889876870
No 29
>PRK03846 adenylylsulfate kinase; Provisional
Probab=64.04 E-value=3.8 Score=22.19 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=20.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHC
Q ss_conf 97454450268999987434321012388124676102202
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFD 41 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpvsvflksdvfd 41 (80)
.|||-||||||-.++.-.-. ....-.++|..|.+-
T Consensus 30 TGLSGSGKTTlA~~L~~~L~------~~~~~~~~LDGD~lR 64 (198)
T PRK03846 30 TGLSGSGKSTVAGALEEALH------ELGVHTYLLDGDNVR 64 (198)
T ss_pred ECCCCCCHHHHHHHHHHHHH------HCCCCEEEECHHHHH
T ss_conf 79999988999999999999------759975997779998
No 30
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=63.69 E-value=3.6 Score=22.29 Aligned_cols=44 Identities=34% Similarity=0.474 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEEC-------CCCEEEEEEHHHHCCCCC
Q ss_conf 74544502689999874343210123-------881246761022023113
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALS-------NDPVSVFLKSDVFDGISK 45 (80)
Q Consensus 2 glsesgkttlleaiflfgealalals-------ndpvsvflksdvfdgisk 45 (80)
|-..+|||||.|++.+++-+...+-+ +.-+|-|.....--|||-
T Consensus 17 ~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI 67 (526)
T PRK00741 17 SHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISV 67 (526)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEE
T ss_conf 378989899999999746752448466314678864678858899759648
No 31
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=63.58 E-value=3.2 Score=22.62 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|.|-||||||+..|--+
T Consensus 60 vG~SGsGKSTLlr~i~gL 77 (400)
T PRK10070 60 MGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999984699999999759
No 32
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=61.94 E-value=4.1 Score=22.00 Aligned_cols=16 Identities=56% Similarity=0.669 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.|-|-||||||+..|=
T Consensus 29 FG~SGsGKTtli~~ia 44 (361)
T TIGR02142 29 FGRSGSGKTTLIRLIA 44 (361)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 2589970789999987
No 33
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=60.95 E-value=4.3 Score=21.89 Aligned_cols=45 Identities=33% Similarity=0.305 Sum_probs=28.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEEC---CCCEEEEEEHHHHCCCCC
Q ss_conf 974544502689999874343210123---881246761022023113
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALS---NDPVSVFLKSDVFDGISK 45 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalals---ndpvsvflksdvfdgisk 45 (80)
+|-+.+|||||.|++.....+..-.=+ ...++-|.....-.|||-
T Consensus 5 igH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi 52 (268)
T cd04170 5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSI 52 (268)
T ss_pred EECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCE
T ss_conf 908999989999999996699665765458973577878898679675
No 34
>PRK05541 adenylylsulfate kinase; Provisional
Probab=60.82 E-value=5 Score=21.54 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHCCCCC
Q ss_conf 974544502689999874343210123881246761022023113
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISK 45 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpvsvflksdvfdgisk 45 (80)
.|||-|||||+-.++.-.=.. .....++|..|.+-.+..
T Consensus 13 TGLsGSGKTTiA~~l~~~L~~------~g~~~~~LDGD~lR~~~~ 51 (176)
T PRK05541 13 TGLAGSGKTTIAKALYERLKL------KYSNVIYLDGDELREIFG 51 (176)
T ss_pred ECCCCCCHHHHHHHHHHHHHH------CCCCEEEECCHHHHHHHC
T ss_conf 899999899999999999997------599779988689998736
No 35
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=60.66 E-value=4.3 Score=21.89 Aligned_cols=18 Identities=56% Similarity=0.656 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||||+|..|-=|
T Consensus 37 LGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 37 LGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 899888889999999677
No 36
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.46 E-value=5.4 Score=21.36 Aligned_cols=19 Identities=63% Similarity=1.017 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHH--HHHH
Q ss_conf 745445026899998--7434
Q gi|254781089|r 2 GLSESGKTTLLEAIF--LFGE 20 (80)
Q Consensus 2 glsesgkttlleaif--lfge 20 (80)
|+..+||||||+||- |||.
T Consensus 35 G~NG~GKTTll~Ai~~~LYG~ 55 (650)
T TIGR03185 35 GLNGAGKTTLLDAIQLGLYGK 55 (650)
T ss_pred CCCCCCHHHHHHHHHHHHCCC
T ss_conf 799997899999999995695
No 37
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=59.86 E-value=4.7 Score=21.70 Aligned_cols=16 Identities=56% Similarity=0.723 Sum_probs=13.6
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-|||+|||..|-
T Consensus 32 LGPSGSGKsTLLR~iA 47 (241)
T TIGR00968 32 LGPSGSGKSTLLRVIA 47 (241)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 4689873789999983
No 38
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=59.81 E-value=5.1 Score=21.49 Aligned_cols=21 Identities=52% Similarity=0.743 Sum_probs=17.2
Q ss_pred CCCCCCHHHHHHHHH--HHHHHH
Q ss_conf 745445026899998--743432
Q gi|254781089|r 2 GLSESGKTTLLEAIF--LFGEAL 22 (80)
Q Consensus 2 glsesgkttlleaif--lfgeal 22 (80)
|-.-|||||+|+||. |||++-
T Consensus 37 G~TGAGKSTIlDAItfALYG~~~ 59 (1047)
T PRK10246 37 GPTGAGKTTLLDAICLALYHETP 59 (1047)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99999889999999999589988
No 39
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=58.63 E-value=4.5 Score=21.77 Aligned_cols=17 Identities=65% Similarity=0.698 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-||||||+.+|.-
T Consensus 39 lGpnGsGKSTLl~~i~G 55 (226)
T cd03234 39 LGSSGSGKTTLLDAISG 55 (226)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 98999609999999967
No 40
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=58.58 E-value=4.6 Score=21.75 Aligned_cols=18 Identities=44% Similarity=0.466 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||||..|--+
T Consensus 32 ~GpSG~GKSTlLr~iaGl 49 (213)
T cd03301 32 LGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999988099999999769
No 41
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=58.40 E-value=9.4 Score=20.09 Aligned_cols=15 Identities=47% Similarity=0.762 Sum_probs=12.2
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
.|||-|||+|+-.|+
T Consensus 398 TGLsgsGKsTiA~al 412 (568)
T PRK05537 398 TGLSGAGKSTIAKAL 412 (568)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 457888776999999
No 42
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=58.04 E-value=4.7 Score=21.69 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+.+|--+
T Consensus 30 ~GpsGaGKTTLl~~iaGl 47 (352)
T PRK11144 30 FGRSGAGKTSLINLISGL 47 (352)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999996299999999768
No 43
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.45 E-value=7 Score=20.76 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHH--HHHHHHHH
Q ss_conf 745445026899998--74343210
Q gi|254781089|r 2 GLSESGKTTLLEAIF--LFGEALAL 24 (80)
Q Consensus 2 glsesgkttlleaif--lfgealal 24 (80)
|-.-|||||+|+||. |||....+
T Consensus 32 G~nGsGKSSIldAI~~ALyG~~~~~ 56 (908)
T COG0419 32 GPNGAGKSSILDAITFALYGKTPRL 56 (908)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 9999978899999999982898775
No 44
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=56.34 E-value=5.5 Score=21.34 Aligned_cols=18 Identities=56% Similarity=0.661 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||||..|-..
T Consensus 30 ~GpSGsGKSTLL~~i~gl 47 (206)
T TIGR03608 30 VGESGSGKSTLLNIIGLL 47 (206)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 879997099999999759
No 45
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=56.22 E-value=6.4 Score=20.98 Aligned_cols=18 Identities=50% Similarity=0.624 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||||||--+-=|
T Consensus 2 LGpSGcGKTTlLrlLAGf 19 (331)
T TIGR01187 2 LGPSGCGKTTLLRLLAGF 19 (331)
T ss_pred CCCCCCCHHHHHHHHHCC
T ss_conf 788887479999998345
No 46
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.92 E-value=5.2 Score=21.47 Aligned_cols=18 Identities=44% Similarity=0.584 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||++..|--+
T Consensus 29 iGpSGsGKSTll~~i~GL 46 (214)
T cd03297 29 FGASGAGKSTLLRCIAGL 46 (214)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999973599999999849
No 47
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.92 E-value=5 Score=21.55 Aligned_cols=19 Identities=58% Similarity=0.656 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
+|-|-|||||||..|--+-
T Consensus 56 vG~SGsGKSTLLr~i~GL~ 74 (269)
T cd03294 56 MGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred ECCCCCHHHHHHHHHHCCC
T ss_conf 9899848999999997599
No 48
>PRK08233 hypothetical protein; Provisional
Probab=55.89 E-value=6.3 Score=21.02 Aligned_cols=15 Identities=47% Similarity=0.561 Sum_probs=13.5
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-|-|||||+.++|.
T Consensus 10 GgSgSGKTtla~~l~ 24 (182)
T PRK08233 10 AVSGGGKTTLTERLT 24 (182)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 888678999999999
No 49
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II; InterPro: IPR011910 This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.; GO: 0016757 transferase activity transferring glycosyl groups, 0009103 lipopolysaccharide biosynthetic process.
Probab=55.57 E-value=6.5 Score=20.94 Aligned_cols=24 Identities=46% Similarity=0.499 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHHEECCCC
Q ss_conf 4502689999874343210123881
Q gi|254781089|r 6 SGKTTLLEAIFLFGEALALALSNDP 30 (80)
Q Consensus 6 sgkttlleaiflfgealalalsndp 30 (80)
.|+|+|-|||-|.+-|-| +.|||-
T Consensus 259 aG~T~L~EAvdLia~a~a-vV~NDS 282 (361)
T TIGR02195 259 AGETSLDEAVDLIALAKA-VVSNDS 282 (361)
T ss_pred CCCCCHHHHHHHHHHCCE-EEECCH
T ss_conf 478888899999871560-121560
No 50
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.99 E-value=5.5 Score=21.32 Aligned_cols=18 Identities=56% Similarity=0.654 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||||..|--+
T Consensus 30 lGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 30 VGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999995599999999769
No 51
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=54.86 E-value=5.5 Score=21.32 Aligned_cols=15 Identities=53% Similarity=0.904 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+||..+||||++..+
T Consensus 5 lGLd~aGKTTil~~l 19 (167)
T cd04161 5 VGLDNAGKTTLVSAL 19 (167)
T ss_pred EEECCCCHHHHHHHH
T ss_conf 900899889999998
No 52
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=54.66 E-value=6.3 Score=21.02 Aligned_cols=20 Identities=45% Similarity=0.554 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 97454450268999987434
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGE 20 (80)
Q Consensus 1 mglsesgkttlleaiflfge 20 (80)
+|-|-|||+|||..|-..-+
T Consensus 34 iGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 34 IGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred ECCCCCCHHHHHHHHHCCCC
T ss_conf 89999988899999977868
No 53
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.32 E-value=5.9 Score=21.16 Aligned_cols=18 Identities=50% Similarity=0.613 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|--+
T Consensus 32 iG~SGsGKSTll~~i~gL 49 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999997299999999759
No 54
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.86 E-value=6 Score=21.14 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||||..|--.
T Consensus 33 iGpsGsGKSTLl~~i~gl 50 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999983399999999749
No 55
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=53.77 E-value=7.1 Score=20.74 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 974544502689999874343
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEA 21 (80)
Q Consensus 1 mglsesgkttlleaiflfgea 21 (80)
+|-..+|||||.|++...--+
T Consensus 5 ~gH~~~GKTtL~e~lL~~~g~ 25 (237)
T cd04168 5 LAHVDAGKTTLTESLLYTSGA 25 (237)
T ss_pred ECCCCCCHHHHHHHHHHHCCH
T ss_conf 938998999999999996571
No 56
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=53.70 E-value=6.6 Score=20.91 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9745445026899998743432
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEAL 22 (80)
Q Consensus 1 mglsesgkttlleaiflfgeal 22 (80)
+|++.||||+|+..+ ..|+..
T Consensus 9 lGl~~sGKT~Lf~~L-~~~~~~ 29 (181)
T pfam09439 9 AGLCDSGKTSLFTLL-TTGSVR 29 (181)
T ss_pred ECCCCCCHHHHHHHH-HCCCCC
T ss_conf 868999899999999-759948
No 57
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.55 E-value=6.2 Score=21.06 Aligned_cols=18 Identities=56% Similarity=0.647 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||||..|--+
T Consensus 32 iGpSGsGKSTllr~i~Gl 49 (232)
T cd03300 32 LGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998399999999779
No 58
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=52.08 E-value=6.5 Score=20.93 Aligned_cols=18 Identities=61% Similarity=0.711 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||||..|--+
T Consensus 37 lGpSG~GKTTlLr~iaGL 54 (362)
T TIGR03258 37 IGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999974599999999777
No 59
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=51.94 E-value=7.1 Score=20.75 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+.+|.
T Consensus 28 vG~NGaGKSTLl~~i~ 43 (204)
T cd03240 28 VGQNGAGKTTIIEALK 43 (204)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 9899999999999986
No 60
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=51.93 E-value=8 Score=20.45 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|-|-|||.|+|.+||-
T Consensus 40 ~G~SGaGKSTlLk~lYa 56 (224)
T TIGR02324 40 SGPSGAGKSTLLKSLYA 56 (224)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 36888767899997663
No 61
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=51.86 E-value=6.5 Score=20.94 Aligned_cols=18 Identities=44% Similarity=0.521 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|--+
T Consensus 36 iGpsGsGKSTLl~~i~Gl 53 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999995799999999759
No 62
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=51.32 E-value=6.8 Score=20.85 Aligned_cols=18 Identities=50% Similarity=0.562 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-+||||+|..|--+
T Consensus 36 lGpSG~GKtTlLr~iaGl 53 (353)
T TIGR03265 36 LGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999953599999999769
No 63
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=50.61 E-value=7.7 Score=20.55 Aligned_cols=15 Identities=47% Similarity=0.882 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+|++.+||||++..+
T Consensus 5 lGl~~sGKTtil~~l 19 (162)
T cd04157 5 VGLDNSGKTTIINQL 19 (162)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 999999889999999
No 64
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=50.46 E-value=7.2 Score=20.71 Aligned_cols=18 Identities=44% Similarity=0.493 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|.-.
T Consensus 36 iG~sGsGKTTll~~i~Gl 53 (218)
T cd03255 36 VGPSGSGKSTLLNILGGL 53 (218)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998699999999669
No 65
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=50.31 E-value=9.7 Score=20.01 Aligned_cols=19 Identities=53% Similarity=0.910 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHH--HHHH
Q ss_conf 745445026899998--7434
Q gi|254781089|r 2 GLSESGKTTLLEAIF--LFGE 20 (80)
Q Consensus 2 glsesgkttlleaif--lfge 20 (80)
|-.-+||||||+||- |||+
T Consensus 37 G~tGAGKtsLldAI~yALYGk 57 (1063)
T TIGR00618 37 GKTGAGKTSLLDAITYALYGK 57 (1063)
T ss_pred CCCCCCHHHHHHHHHHHHCCC
T ss_conf 889983545999999987288
No 66
>PRK13544 consensus
Probab=50.21 E-value=7.9 Score=20.50 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+.||||||+..|.=+
T Consensus 33 ~G~NGsGKSTLl~~i~Gl 50 (208)
T PRK13544 33 IGNNGSGKTSLLRLLAGL 50 (208)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999999899999999588
No 67
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=50.20 E-value=7.6 Score=20.58 Aligned_cols=18 Identities=44% Similarity=0.480 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|.-.
T Consensus 41 iG~sGsGKSTLl~~i~Gl 58 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999994099999999669
No 68
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=49.96 E-value=8.9 Score=20.21 Aligned_cols=15 Identities=47% Similarity=0.685 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-|-||||||...|-
T Consensus 6 G~S~SGKTTla~~L~ 20 (187)
T cd02024 6 GVTNSGKTTLAKLLQ 20 (187)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 888875999999999
No 69
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=49.96 E-value=7.4 Score=20.64 Aligned_cols=18 Identities=50% Similarity=0.593 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+.+|.-+
T Consensus 37 iG~sGsGKSTLl~~i~Gl 54 (228)
T cd03257 37 VGESGSGKSTLARAILGL 54 (228)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998699999999728
No 70
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=49.74 E-value=9.8 Score=19.99 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHH--HHHHHHHH
Q ss_conf 745445026899998--74343210
Q gi|254781089|r 2 GLSESGKTTLLEAIF--LFGEALAL 24 (80)
Q Consensus 2 glsesgkttlleaif--lfgealal 24 (80)
|-.-+||||+++||- |||+.-..
T Consensus 35 G~nGsGKSTIlDAI~~aLYGk~~r~ 59 (213)
T cd03279 35 GPTGAGKSTILDAITYALYGKTPRY 59 (213)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 8999978899999999983888233
No 71
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=49.47 E-value=8 Score=20.46 Aligned_cols=16 Identities=50% Similarity=0.789 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.||..|||||+|..+-
T Consensus 23 lGLd~aGKTTil~~lk 38 (184)
T smart00178 23 LGLDNAGKTTLLHMLK 38 (184)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 9658898899999980
No 72
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=49.42 E-value=6.3 Score=21.01 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=18.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCE
Q ss_conf 9745445026899998743432101238812
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPV 31 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpv 31 (80)
+|++.||||+|+...- .|+...-.-|-.|-
T Consensus 6 ~Gl~~aGKT~Lf~~L~-~~~~~~T~tS~~~n 35 (203)
T cd04105 6 LGPSDSGKTALFTKLT-TGKYRSTVTSIEPN 35 (203)
T ss_pred ECCCCCCHHHHHHHHH-CCCCCCCCCCCCCC
T ss_conf 9079998999999997-49988877888786
No 73
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=49.39 E-value=7.8 Score=20.53 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||+||+..|..+
T Consensus 33 ~GpSGsGKSTLl~~i~gl 50 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 979995399999999629
No 74
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.21 E-value=8.3 Score=20.38 Aligned_cols=16 Identities=44% Similarity=0.603 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-|||||||..|-
T Consensus 39 lG~nGsGKSTLl~~l~ 54 (202)
T cd03233 39 LGRPGSGCSTLLKALA 54 (202)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 9899998899999983
No 75
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=48.87 E-value=8 Score=20.47 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
||---||||||+|-..-
T Consensus 40 msspGSGKT~LiEk~~~ 56 (225)
T TIGR00073 40 MSSPGSGKTTLIEKLIE 56 (225)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 25886115899999999
No 76
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.83 E-value=8.1 Score=20.43 Aligned_cols=18 Identities=50% Similarity=0.606 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||||..|--+
T Consensus 32 vGpSG~GKSTllr~i~Gl 49 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998399999999859
No 77
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=48.72 E-value=8.3 Score=20.38 Aligned_cols=18 Identities=50% Similarity=0.628 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+.+|.-+
T Consensus 33 iG~nGsGKSTll~~i~Gl 50 (240)
T PRK09493 33 IGPSGSGKSTLLRCINKL 50 (240)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998099999999638
No 78
>KOG0073 consensus
Probab=48.39 E-value=8.5 Score=20.33 Aligned_cols=15 Identities=47% Similarity=0.888 Sum_probs=13.0
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
.||+.|||||+++.+
T Consensus 22 LGLdNsGKTti~~kl 36 (185)
T KOG0073 22 LGLDNSGKTTIVKKL 36 (185)
T ss_pred EECCCCCCHHHHHHH
T ss_conf 912789824489885
No 79
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.19 E-value=8.1 Score=20.42 Aligned_cols=18 Identities=50% Similarity=0.700 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|--+
T Consensus 31 iGpSGsGKSTLlr~i~Gl 48 (235)
T cd03299 31 LGPTGSGKSVLLETIAGF 48 (235)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999963599999999749
No 80
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=48.13 E-value=8.9 Score=20.20 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||+||+.++.-+
T Consensus 33 vG~sGsGKSTLl~~l~g~ 50 (218)
T cd03290 33 VGQVGCGKSSLLLAILGE 50 (218)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999998099999998555
No 81
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=47.94 E-value=9.3 Score=20.11 Aligned_cols=17 Identities=47% Similarity=0.538 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-+||||+|..|--
T Consensus 35 lGPSGcGKSTlLr~IAG 51 (338)
T COG3839 35 LGPSGCGKSTLLRMIAG 51 (338)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 89998888999999968
No 82
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=47.94 E-value=12 Score=19.57 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-..+|||||+|++...
T Consensus 6 iGHvd~GKTTL~~~ll~~ 23 (179)
T cd01890 6 IAHIDHGKSTLADRLLEL 23 (179)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 948998989999999998
No 83
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=47.81 E-value=9.4 Score=20.08 Aligned_cols=15 Identities=67% Similarity=0.736 Sum_probs=12.7
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-|.|||||||.+|-
T Consensus 39 GESGSGKtTlL~~is 53 (258)
T COG4107 39 GESGSGKTTLLKCIS 53 (258)
T ss_pred ECCCCCHHHHHHHHH
T ss_conf 058875776999986
No 84
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=47.51 E-value=9 Score=20.18 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+||..+||||++..+
T Consensus 5 lGLd~aGKTTil~~l 19 (164)
T cd04162 5 LGLDGAGKTSLLHSL 19 (164)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 967999899999998
No 85
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=47.39 E-value=10 Score=19.83 Aligned_cols=16 Identities=50% Similarity=0.690 Sum_probs=13.9
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7454450268999987
Q gi|254781089|r 2 GLSESGKTTLLEAIFL 17 (80)
Q Consensus 2 glsesgkttlleaifl 17 (80)
|-|-+||||||.-|+-
T Consensus 35 G~SGAGKttLLKLl~~ 50 (215)
T TIGR02673 35 GPSGAGKTTLLKLLYG 50 (215)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 2778617899999985
No 86
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.23 E-value=8.4 Score=20.34 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-||||||+..|-.
T Consensus 37 vG~SGsGKSTllr~i~g 53 (233)
T cd03258 37 IGRSGAGKSTLIRCING 53 (233)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 88980589999999967
No 87
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=47.19 E-value=9.4 Score=20.09 Aligned_cols=20 Identities=45% Similarity=0.740 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 974544502689999874343
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEA 21 (80)
Q Consensus 1 mglsesgkttlleaiflfgea 21 (80)
+|++.+|||+++..+ ..|+-
T Consensus 6 lG~~~sGKTsll~~l-~~~~~ 25 (159)
T cd04150 6 VGLDAAGKTTILYKL-KLGEI 25 (159)
T ss_pred ECCCCCCHHHHHHHH-HCCCC
T ss_conf 999999989999999-72996
No 88
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=47.14 E-value=9 Score=20.18 Aligned_cols=18 Identities=44% Similarity=0.671 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+.+|.-+
T Consensus 37 iG~sGsGKSTLl~~i~gl 54 (257)
T PRK10619 37 IGSSGSGKSTFLRCINFL 54 (257)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 989998199999999659
No 89
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=46.85 E-value=8.7 Score=20.25 Aligned_cols=18 Identities=56% Similarity=0.656 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-+||||||..|.-+
T Consensus 33 vGpnGaGKSTLl~~i~Gl 50 (255)
T PRK11248 33 LGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999984699999999759
No 90
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=46.78 E-value=8.9 Score=20.22 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-||||||+.+|.
T Consensus 33 iG~nGaGKSTLl~~i~ 48 (273)
T PRK13547 33 LGRNGAGKSTLLKVLA 48 (273)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999976999999995
No 91
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=46.69 E-value=11 Score=19.66 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 97454450268999987434321
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALA 23 (80)
Q Consensus 1 mglsesgkttlleaiflfgeala 23 (80)
.|-|-|||||||..+.=|=+...
T Consensus 393 ~G~SG~GKsTLL~~L~G~l~P~~ 415 (566)
T TIGR02868 393 LGPSGSGKSTLLATLAGLLDPLQ 415 (566)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 66887657899999984028999
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.23 E-value=9 Score=20.17 Aligned_cols=18 Identities=56% Similarity=0.593 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|--+
T Consensus 34 iGpSGsGKSTll~~i~Gl 51 (239)
T cd03296 34 LGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999997799999999769
No 93
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=45.97 E-value=9.1 Score=20.17 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHCCCCCCCEEEEEEE
Q ss_conf 974544502689999874343210123881246761022023113430257667
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGK 54 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpvsvflksdvfdgisknqygfftgk 54 (80)
+|-|-||||||+.+|--+ +.-+--+|++...-....++.+..-|..+
T Consensus 44 vGeSGsGKSTL~r~i~gl-------~~p~sG~I~~~g~~l~~~~~~~~~~~rr~ 90 (266)
T PRK10419 44 LGRSGCGKSTLARLLVGL-------ESPSQGNISWRGEPLAKLNRAQRKAFRRD 90 (266)
T ss_pred ECCCCCHHHHHHHHHHCC-------CCCCCEEEEECCEECCCCCHHHHHHHHCC
T ss_conf 999997799999999669-------99996299889995675899999997547
No 94
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=45.43 E-value=11 Score=19.75 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-||||||+.+++.
T Consensus 27 iG~nGsGKSTLl~~~~~ 43 (176)
T cd03238 27 TGVSGSGKSTLVNEGLY 43 (176)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 99999989999998887
No 95
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=45.35 E-value=9.8 Score=19.98 Aligned_cols=16 Identities=56% Similarity=0.765 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+.+|.
T Consensus 41 lGpnGaGKSTLl~~l~ 56 (194)
T cd03213 41 MGPSGAGKSTLLNALA 56 (194)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9899951999999985
No 96
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=45.30 E-value=11 Score=19.77 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|.-+
T Consensus 32 iG~nGaGKSTLl~~i~Gl 49 (205)
T cd03226 32 TGKNGAGKTTLAKILAGL 49 (205)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 889999899999999568
No 97
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=45.17 E-value=10 Score=19.88 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
+|-|-||||||+..|.-+-
T Consensus 32 iG~SGsGKSTll~~i~gL~ 50 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 9999981999999997445
No 98
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=45.09 E-value=12 Score=19.56 Aligned_cols=15 Identities=53% Similarity=0.780 Sum_probs=12.3
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
-|||-|||+|+-.|.
T Consensus 29 TGLSGsGKSTiA~al 43 (197)
T COG0529 29 TGLSGSGKSTIANAL 43 (197)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 468888787999999
No 99
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=44.79 E-value=8.6 Score=20.29 Aligned_cols=19 Identities=42% Similarity=0.553 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
.|.|-||||||..-.--|=
T Consensus 506 VGmSGSGKsTLaKLLV~Ff 524 (710)
T TIGR01193 506 VGMSGSGKSTLAKLLVGFF 524 (710)
T ss_pred ECCCCCCHHHHHHHHHCCC
T ss_conf 7367974899998752035
No 100
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=44.69 E-value=11 Score=19.69 Aligned_cols=16 Identities=50% Similarity=0.667 Sum_probs=13.6
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.|.|-||||+|+..|-
T Consensus 30 FG~SGsGKTslin~Ia 45 (352)
T COG4148 30 FGPSGSGKTSLINMIA 45 (352)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 6478887161898974
No 101
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=44.69 E-value=11 Score=19.62 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=7.6
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 74544502689999
Q gi|254781089|r 2 GLSESGKTTLLEAI 15 (80)
Q Consensus 2 glsesgkttlleai 15 (80)
|-|-||||||+.+|
T Consensus 33 G~sGsGKSTL~~~l 46 (520)
T TIGR03269 33 GRSGAGKSVLMHVL 46 (520)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 99996999999999
No 102
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=44.64 E-value=10 Score=19.89 Aligned_cols=16 Identities=50% Similarity=0.789 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.||..+||||+|..+-
T Consensus 25 lGld~aGKTTil~~l~ 40 (190)
T cd00879 25 LGLDNAGKTTLLHMLK 40 (190)
T ss_pred EECCCCCHHHHHHHHH
T ss_conf 9069998899999980
No 103
>KOG0065 consensus
Probab=44.62 E-value=12 Score=19.60 Aligned_cols=14 Identities=64% Similarity=0.862 Sum_probs=9.8
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 97454450268999
Q gi|254781089|r 1 MGLSESGKTTLLEA 14 (80)
Q Consensus 1 mglsesgkttllea 14 (80)
||-|-+||||||..
T Consensus 823 MG~SGAGKTTLLdv 836 (1391)
T KOG0065 823 MGESGAGKTTLLDV 836 (1391)
T ss_pred HCCCCCCHHHHHHH
T ss_conf 24778765779999
No 104
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=44.48 E-value=12 Score=19.49 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|.|-+||+|||..|--
T Consensus 36 IG~SGaGKSTLLR~lng 52 (258)
T COG3638 36 IGPSGAGKSTLLRSLNG 52 (258)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 87888868999999866
No 105
>COG1106 Predicted ATPases [General function prediction only]
Probab=44.44 E-value=14 Score=19.11 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEECC
Q ss_conf 745445026899998743432101238
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALSN 28 (80)
Q Consensus 2 glsesgkttlleaiflfgealalalsn 28 (80)
|--.+|||.||||++++-...--...+
T Consensus 29 G~N~sGKSNlleAl~f~~~~~~~~~~~ 55 (371)
T COG1106 29 GANGAGKSNLLEALYFLKGLISPGSES 55 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 678876069999999999733577667
No 106
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=44.32 E-value=11 Score=19.76 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=12.1
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
||.|-|||||+-+++
T Consensus 9 mGVsGsGKSTvg~~L 23 (176)
T PRK09825 9 MGVSGSGKSLIGSKI 23 (176)
T ss_pred EECCCCCHHHHHHHH
T ss_conf 828989989999999
No 107
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=44.21 E-value=11 Score=19.76 Aligned_cols=17 Identities=65% Similarity=0.765 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-||||||+.+|-.
T Consensus 33 iG~sGsGKSTLl~~l~g 49 (248)
T PRK11264 33 IGPSGSGKTTLLRCINL 49 (248)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 99999809999999975
No 108
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=43.64 E-value=11 Score=19.67 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-||||||+.+|.
T Consensus 33 ~G~sGsGKSTLl~~l~ 48 (166)
T cd03223 33 TGPSGTGKSSLFRALA 48 (166)
T ss_pred ECCCCCCHHHHHHHHC
T ss_conf 9589998899999986
No 109
>COG3910 Predicted ATPase [General function prediction only]
Probab=43.59 E-value=13 Score=19.39 Aligned_cols=16 Identities=63% Similarity=0.717 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7454450268999987
Q gi|254781089|r 2 GLSESGKTTLLEAIFL 17 (80)
Q Consensus 2 glsesgkttlleaifl 17 (80)
|-.-|||.||||||-.
T Consensus 44 GENGsGKSTLLEaiA~ 59 (233)
T COG3910 44 GENGSGKSTLLEAIAA 59 (233)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 6898657889999996
No 110
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=43.51 E-value=12 Score=19.60 Aligned_cols=18 Identities=44% Similarity=0.492 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+-||||||+..|-=+
T Consensus 32 ~G~NGsGKSTLlk~i~Gl 49 (201)
T cd03231 32 TGPNGSGKTTLLRILAGL 49 (201)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999667
No 111
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=43.35 E-value=13 Score=19.30 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=12.6
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
|+-.-||||||||...
T Consensus 110 ~sSPGSGKTtLLe~ti 125 (290)
T PRK10463 110 VSSPGSGKTTLLTETL 125 (290)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 0699878899999999
No 112
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=43.34 E-value=12 Score=19.58 Aligned_cols=21 Identities=38% Similarity=0.827 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHH-HHHHHH
Q ss_conf 974544502689999-874343
Q gi|254781089|r 1 MGLSESGKTTLLEAI-FLFGEA 21 (80)
Q Consensus 1 mglsesgkttlleai-flfgea 21 (80)
.|-|-|||+||+.+| |+.|+.
T Consensus 28 vGpsGsGKSTLl~~i~~~lg~~ 49 (197)
T cd03278 28 VGPNGSGKSNIIDAIRWVLGEQ 49 (197)
T ss_pred ECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999998899999999874777
No 113
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=43.06 E-value=11 Score=19.75 Aligned_cols=18 Identities=56% Similarity=0.600 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|.-+
T Consensus 34 lGpSGsGKSTLlr~iaGL 51 (352)
T PRK10851 34 LGPSGSGKTTLLRIIAGL 51 (352)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999984699999999769
No 114
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=42.85 E-value=13 Score=19.41 Aligned_cols=18 Identities=44% Similarity=0.671 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|.+-||||||+.+|.=+
T Consensus 32 iG~nGaGKSTLl~~i~Gl 49 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999998599999999779
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=42.55 E-value=10 Score=19.84 Aligned_cols=38 Identities=37% Similarity=0.671 Sum_probs=20.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCE--EEEEEHHHHCCCCCCC
Q ss_conf 9745445026899998743432101238812--4676102202311343
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPV--SVFLKSDVFDGISKNQ 47 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpv--svflksdvfdgisknq 47 (80)
.|-|-|||+|||-- .| .| .+|- .|+.+-.-+.-.|.|.
T Consensus 37 vG~SGSGKSTLLHl---LG-----GL-D~PT~G~v~f~G~~l~~lS~~~ 76 (221)
T TIGR02211 37 VGSSGSGKSTLLHL---LG-----GL-DNPTSGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred ECCCCCCHHHHHHH---HH-----CC-CCCCCCEEEECCCCHHHCCHHH
T ss_conf 73678716899998---73-----06-8996315897063234404467
No 116
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=42.26 E-value=13 Score=19.39 Aligned_cols=17 Identities=59% Similarity=0.665 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-||||||+.+|.-
T Consensus 38 iG~nGaGKSTLl~~i~G 54 (258)
T PRK11701 38 VGESGSGKTTLLNALSA 54 (258)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 88899889999999856
No 117
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=41.93 E-value=11 Score=19.66 Aligned_cols=18 Identities=44% Similarity=0.538 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-||||||+..|.-+
T Consensus 42 vG~sGsGKSTLl~~i~Gl 59 (228)
T PRK10584 42 IGESGSGKSTLLAILAGL 59 (228)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999985899999999669
No 118
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.84 E-value=13 Score=19.42 Aligned_cols=18 Identities=50% Similarity=0.813 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-||||||+..+.-+
T Consensus 33 vG~sGsGKSTLl~ll~gl 50 (236)
T cd03253 33 VGPSGSGKSTILRLLFRF 50 (236)
T ss_pred ECCCCCCHHHHHHHHCCC
T ss_conf 999999899999997438
No 119
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=41.79 E-value=13 Score=19.41 Aligned_cols=17 Identities=47% Similarity=0.495 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-||||||+.+|.=
T Consensus 38 iG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 38 MGPNGSGKSTLSKVIAG 54 (252)
T ss_pred ECCCCCCHHHHHHHHCC
T ss_conf 99999999999999727
No 120
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=41.46 E-value=13 Score=19.35 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-||||||+..|.-
T Consensus 33 iG~nGaGKSTLl~~i~G 49 (248)
T PRK09580 33 MGPNGSGKSTLSATLAG 49 (248)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 99999999999999837
No 121
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=41.40 E-value=15 Score=19.00 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-|||+||+.++.
T Consensus 27 iG~sGsGKSTLl~~~L 42 (261)
T cd03271 27 TGVSGSGKSSLINDTL 42 (261)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 8799986999999998
No 122
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=41.38 E-value=13 Score=19.42 Aligned_cols=18 Identities=50% Similarity=0.656 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-+|||||+..|.-+
T Consensus 31 iG~nGaGKSTLl~~i~Gl 48 (233)
T PRK10771 31 LGPSGAGKSTLLNLIAGF 48 (233)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998199999999659
No 123
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=41.19 E-value=27 Score=17.67 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=13.0
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-|-|||||+...+-
T Consensus 6 G~SgSGKTT~a~~L~ 20 (196)
T pfam00485 6 GSSGAGKTTVARTFV 20 (196)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 998571999999999
No 124
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=41.13 E-value=13 Score=19.29 Aligned_cols=19 Identities=47% Similarity=0.793 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 97454450268999987434
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGE 20 (80)
Q Consensus 1 mglsesgkttlleaiflfge 20 (80)
.|++.+||||+++.+ .+|+
T Consensus 19 lG~~~~GKTsil~~l-~~~~ 37 (175)
T smart00177 19 VGLDAAGKTTILYKL-KLGE 37 (175)
T ss_pred ECCCCCCHHHHHHHH-HCCC
T ss_conf 988999989999999-6599
No 125
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=41.08 E-value=14 Score=19.20 Aligned_cols=47 Identities=34% Similarity=0.531 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCCCCE
Q ss_conf 97454450268999987434321012388124676102202311343025766787511123200148740
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQFILSEKMDIPH 71 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpvsvflksdvfdgisknqygfftgkikvdaqfilsekmdiph 71 (80)
+|-|-+||+|+|.++=...+. | +|. -++|+|--+.|=|.+.+.|+-+
T Consensus 33 IGPSGCGKSTlLR~lNRMnDl---------~---------~~~------r~~G~v~f~G~dIy~~~~D~~~ 79 (248)
T TIGR00972 33 IGPSGCGKSTLLRSLNRMNDL---------V---------PGV------RIEGKVLFDGQDIYDKKIDVVE 79 (248)
T ss_pred ECCCCCCHHHHHHHHHHHHHH---------C---------CCE------EEEEEEEECCCCCCCCCCCHHH
T ss_conf 778898678999998877640---------7---------881------6888898645114565668788
No 126
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=40.61 E-value=13 Score=19.25 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=13.6
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-+|||||+.+|.
T Consensus 34 iGpNGaGKSTLlk~i~ 49 (257)
T PRK13548 34 LGPNGAGKSTLLRALS 49 (257)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 9999987999999985
No 127
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=40.55 E-value=14 Score=19.24 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.|++.+|||||+..+.
T Consensus 20 lG~~~sGKTsll~~l~ 35 (173)
T cd04155 20 LGLDNAGKTTILKQLA 35 (173)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 9799998899999985
No 128
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=40.46 E-value=14 Score=19.21 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
+|-|-||||||+.+|.-+-
T Consensus 31 iG~nGsGKTTLl~~i~G~~ 49 (180)
T cd03214 31 LGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCCCHHHHHHHHHCCC
T ss_conf 9899988999999995798
No 129
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=40.29 E-value=15 Score=19.03 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=8.2
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+|..||||+|++.-+
T Consensus 6 LG~geSGKSTi~KQm 20 (317)
T cd00066 6 LGAGESGKSTILKQM 20 (317)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 679987799999999
No 130
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=40.27 E-value=15 Score=19.00 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|.+-+|||||+..|.=+
T Consensus 35 iGpNGaGKSTLl~~i~Gl 52 (241)
T PRK10895 35 LGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 889998699999999678
No 131
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=40.26 E-value=15 Score=18.94 Aligned_cols=16 Identities=50% Similarity=0.681 Sum_probs=12.9
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.|-|-|||||||..|-
T Consensus 34 lGpSGaGKsTlLRiIA 49 (345)
T COG1118 34 LGPSGAGKSTLLRIIA 49 (345)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 7789876788999985
No 132
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.12 E-value=14 Score=19.17 Aligned_cols=16 Identities=56% Similarity=0.765 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+..|.
T Consensus 39 lGpnGaGKSTLl~~l~ 54 (192)
T cd03232 39 MGESGAGKTTLLDVLA 54 (192)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 9999998899999983
No 133
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=39.98 E-value=14 Score=19.16 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-||||||+..|.-
T Consensus 33 ~G~NGaGKSTLl~~l~G 49 (204)
T PRK13538 33 EGPNGAGKTSLLRILAG 49 (204)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 99999859999999976
No 134
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=39.97 E-value=15 Score=19.06 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-+|||||+..|.-
T Consensus 33 iG~nGaGKSTLlk~i~G 49 (211)
T cd03225 33 VGPNGSGKSTLLRLLNG 49 (211)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 88999989999999964
No 135
>pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP.
Probab=39.82 E-value=18 Score=18.57 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEE
Q ss_conf 7454450268999987434321012
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALAL 26 (80)
Q Consensus 2 glsesgkttlleaiflfgealalal 26 (80)
|-.-+||||+|-+|-+|=.|-...+
T Consensus 24 GTnG~GKTTlLRlIp~FYga~p~rl 48 (1192)
T pfam12128 24 GTNAAGKTTLQRLIPLFYGEYPSRI 48 (1192)
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHC
T ss_conf 4888869999989997528975532
No 136
>PRK07429 phosphoribulokinase; Provisional
Probab=39.80 E-value=20 Score=18.32 Aligned_cols=29 Identities=41% Similarity=0.600 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHHEECCCC
Q ss_conf 745445026899998-74343210123881
Q gi|254781089|r 2 GLSESGKTTLLEAIF-LFGEALALALSNDP 30 (80)
Q Consensus 2 glsesgkttlleaif-lfgealalalsndp 30 (80)
|=|-|||||+..+|- .||+.....++-|-
T Consensus 15 GgSGSGKTTv~r~I~~~fg~~~VtvI~~Dd 44 (331)
T PRK07429 15 GDSGCGKSTFLRRLADLFGEELVTVICLDD 44 (331)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 788778999999999983888779994786
No 137
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=39.80 E-value=14 Score=19.17 Aligned_cols=16 Identities=50% Similarity=0.727 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+..|-
T Consensus 32 iGpnGaGKSTLl~~i~ 47 (200)
T cd03217 32 MGPNGSGKSTLAKTIM 47 (200)
T ss_pred ECCCCCCHHHHHHHHC
T ss_conf 9689999999999970
No 138
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=39.77 E-value=17 Score=18.75 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 97454450268999987434
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGE 20 (80)
Q Consensus 1 mglsesgkttlleaiflfge 20 (80)
+|-|-|||+||+..|.-+-+
T Consensus 40 vG~sGsGKSTLl~ll~g~~~ 59 (207)
T cd03369 40 VGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred ECCCCCCHHHHHHHHHHHCC
T ss_conf 99999879999999998728
No 139
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=39.77 E-value=14 Score=19.08 Aligned_cols=15 Identities=47% Similarity=0.767 Sum_probs=12.3
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
||.|-|||||+-+++
T Consensus 14 MGVsGsGKSTig~~L 28 (177)
T PRK11545 14 MGVSGSGKSAVASAV 28 (177)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 847989999999999
No 140
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=39.75 E-value=16 Score=18.84 Aligned_cols=15 Identities=60% Similarity=0.663 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-|-|||||+-+++.
T Consensus 6 G~sgsGKTT~a~~L~ 20 (198)
T cd02023 6 GGSGSGKTTVAEEII 20 (198)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 999885999999999
No 141
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.72 E-value=14 Score=19.09 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||+||+..|.-+
T Consensus 34 vG~sGsGKSTLl~ll~gl 51 (171)
T cd03228 34 VGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998399999999767
No 142
>PRK10908 cell division protein FtsE; Provisional
Probab=39.59 E-value=13 Score=19.34 Aligned_cols=18 Identities=44% Similarity=0.523 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|.-+
T Consensus 34 iG~nGsGKSTLl~~i~Gl 51 (222)
T PRK10908 34 TGHSGAGKSTLLKLICGI 51 (222)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999980799999999659
No 143
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=39.56 E-value=16 Score=18.86 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHHHH---HHHHHHHEECCCCEEE
Q ss_conf 97454450268999987---4343210123881246
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL---FGEALALALSNDPVSV 33 (80)
Q Consensus 1 mglsesgkttlleaifl---fgealalalsndpvsv 33 (80)
||++.||||..-..||- -.|.+-|+..+++..-
T Consensus 5 MG~~~sGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~ 40 (230)
T pfam04670 5 MGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQS 40 (230)
T ss_pred ECCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCEEEE
T ss_conf 568999877769998679982141202577776778
No 144
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=39.11 E-value=15 Score=19.03 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-+||||||..|.
T Consensus 43 ~GpNGaGKTTLlr~l~ 58 (214)
T PRK13543 43 QGDNGAGKTTLLRVLA 58 (214)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 9999987999999997
No 145
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=38.88 E-value=15 Score=18.92 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|.+-+|||||+.+|+-
T Consensus 32 iG~nGaGKSTL~~~i~G 48 (236)
T cd03219 32 IGPNGAGKTTLFNLISG 48 (236)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 98999739999999967
No 146
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=38.73 E-value=13 Score=19.32 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-+||||+|..|--+
T Consensus 38 lGpSG~GKTTlLr~iaGl 55 (351)
T PRK11432 38 LGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999964999999999769
No 147
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=38.73 E-value=17 Score=18.74 Aligned_cols=18 Identities=50% Similarity=0.540 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||||+|.-|--.
T Consensus 33 iGpSGsGKTTtLkMINrL 50 (309)
T COG1125 33 IGPSGSGKTTTLKMINRL 50 (309)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 878997578799999605
No 148
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.72 E-value=13 Score=19.29 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-|||+||+..+--
T Consensus 26 iG~sGsGKSTLl~~l~G 42 (276)
T PRK13634 26 IGHTGSGKSTLLQHLNG 42 (276)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99999699999999974
No 149
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=38.72 E-value=15 Score=19.07 Aligned_cols=18 Identities=44% Similarity=0.551 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+-+|||||+.+|.-+
T Consensus 36 iGpNGaGKSTLlk~i~Gl 53 (262)
T PRK09984 36 LGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 989996099999999756
No 150
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=38.57 E-value=17 Score=18.77 Aligned_cols=19 Identities=42% Similarity=0.382 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
+|-+-+|||||+.+|.-+-
T Consensus 34 ~G~NGaGKTTLlk~i~Gl~ 52 (206)
T PRK13539 34 TGPNGSGKTTLLRLLAGLL 52 (206)
T ss_pred ECCCCCCHHHHHHHHHCCC
T ss_conf 8999998999999995887
No 151
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=38.09 E-value=15 Score=18.95 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-||||||+..+..
T Consensus 34 iG~nGaGKSTLl~~l~g 50 (242)
T PRK11124 34 LGPSGAGKSSLLRVLNL 50 (242)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 99999719999999965
No 152
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=38.00 E-value=16 Score=18.87 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 974544502689999874343
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEA 21 (80)
Q Consensus 1 mglsesgkttlleaiflfgea 21 (80)
+|++.+|||+++..+ ..|+.
T Consensus 5 lG~~~~GKTsll~~~-~~~~~ 24 (158)
T cd04151 5 LGLDNAGKTTILYRL-QLGEV 24 (158)
T ss_pred ECCCCCCHHHHHHHH-HCCCC
T ss_conf 999999899999999-70996
No 153
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=37.90 E-value=15 Score=18.95 Aligned_cols=17 Identities=59% Similarity=0.483 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-||||||+..|.-
T Consensus 40 iGpnGsGKSTLlk~i~G 56 (269)
T PRK11831 40 MGPSGIGKTTLLRLIGG 56 (269)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 93999759999999967
No 154
>KOG0076 consensus
Probab=37.78 E-value=15 Score=19.05 Aligned_cols=16 Identities=56% Similarity=0.879 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.|+..+||||+||+.-
T Consensus 23 lgldnAGKttfLe~~K 38 (197)
T KOG0076 23 LGLDNAGKTTFLEALK 38 (197)
T ss_pred ECCCCCCCHHHHHHHH
T ss_conf 4244578520898877
No 155
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=37.69 E-value=16 Score=18.82 Aligned_cols=19 Identities=42% Similarity=0.781 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 97454450268999987434
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGE 20 (80)
Q Consensus 1 mglsesgkttlleaiflfge 20 (80)
.|++.+||||++..+ ..++
T Consensus 15 lG~~~sGKTsil~~l-~~~~ 33 (168)
T cd04149 15 LGLDAAGKTTILYKL-KLGQ 33 (168)
T ss_pred ECCCCCCHHHHHHHH-HCCC
T ss_conf 999999989999999-6699
No 156
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=37.68 E-value=18 Score=18.54 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEECCCC
Q ss_conf 74544502689999874343210123881
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALSNDP 30 (80)
Q Consensus 2 glsesgkttlleaiflfgealalalsndp 30 (80)
|-|-||||++-.++.---+..-+.+|-|-
T Consensus 8 G~SSsGKSsiAraLQ~~l~~p~~h~~vD~ 36 (174)
T pfam07931 8 GGSSSGKSSIARALQDILDGPWLHFGVDA 36 (174)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 89988879999999984747467642858
No 157
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.68 E-value=16 Score=18.79 Aligned_cols=16 Identities=56% Similarity=0.742 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
||-|-|||+|||..|-
T Consensus 40 iGgSGsGKStlLr~I~ 55 (263)
T COG1127 40 LGGSGSGKSTLLRLIL 55 (263)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 8898868999999985
No 158
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=37.64 E-value=16 Score=18.86 Aligned_cols=16 Identities=44% Similarity=0.719 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.|-|-||||||+..|.
T Consensus 37 vG~sGsGKSTLl~~i~ 52 (204)
T cd03250 37 VGPVGSGKSSLLSALL 52 (204)
T ss_pred ECCCCCCHHHHHHHHC
T ss_conf 9999985899999981
No 159
>KOG0635 consensus
Probab=37.59 E-value=21 Score=18.21 Aligned_cols=39 Identities=41% Similarity=0.458 Sum_probs=25.9
Q ss_pred CCCCCCCHHHHHHHH---HHHHHHHHHEECCCCEEEEEEHHH
Q ss_conf 974544502689999---874343210123881246761022
Q gi|254781089|r 1 MGLSESGKTTLLEAI---FLFGEALALALSNDPVSVFLKSDV 39 (80)
Q Consensus 1 mglsesgkttlleai---flfgealalalsndpvsvflksdv 39 (80)
.|||.|||.|+--|. .+--..++..|..|.|.-=|.+|.
T Consensus 37 TGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL 78 (207)
T KOG0635 37 TGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDL 78 (207)
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
T ss_conf 425778802599999999986586589854854010434456
No 160
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=37.58 E-value=18 Score=18.59 Aligned_cols=16 Identities=38% Similarity=0.806 Sum_probs=10.6
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|.+-||||||+.+|.
T Consensus 294 ~G~nGsGKsTLl~~L~ 309 (513)
T PRK13549 294 AGLVGAGRTELVQCLF 309 (513)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 4798865899999983
No 161
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=37.56 E-value=18 Score=18.54 Aligned_cols=15 Identities=47% Similarity=0.541 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-|-|||||+...+-
T Consensus 6 G~SgSGKTT~a~~L~ 20 (179)
T cd02028 6 GPSGSGKTTFAKKLS 20 (179)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 989778999999999
No 162
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=37.36 E-value=16 Score=18.87 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+..|.
T Consensus 43 iG~NGaGKSTLl~~l~ 58 (265)
T PRK10575 43 IGHNGSGKSTLLKMLG 58 (265)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999980999999995
No 163
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=37.35 E-value=16 Score=18.78 Aligned_cols=15 Identities=47% Similarity=0.762 Sum_probs=13.0
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
.|++.+||||++..+
T Consensus 5 lGl~~sGKTtil~~l 19 (169)
T cd04158 5 LGLDGAGKTTILFKL 19 (169)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 998999889999999
No 164
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=37.35 E-value=19 Score=18.50 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEECCCC
Q ss_conf 74544502689999874343210123881
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALSNDP 30 (80)
Q Consensus 2 glsesgkttlleaiflfgealalalsndp 30 (80)
|-|-||||++-.++.---+..-+.++.|-
T Consensus 9 G~SSSGKSsiAraLQ~~l~~p~~h~~vD~ 37 (175)
T cd00227 9 GGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 89989889999999984767568841858
No 165
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=37.28 E-value=16 Score=18.81 Aligned_cols=20 Identities=45% Similarity=0.755 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 974544502689999874343
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEA 21 (80)
Q Consensus 1 mglsesgkttlleaiflfgea 21 (80)
+|++.+||||++..+ .+|+-
T Consensus 23 lGl~~sGKTsil~~l-~~~~~ 42 (182)
T PTZ00133 23 VGLDAAGKTTILYKL-KLGEV 42 (182)
T ss_pred ECCCCCCHHHHHHHH-HCCCC
T ss_conf 967998899999999-62997
No 166
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.24 E-value=17 Score=18.71 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|.+-+|||||+..|.=
T Consensus 32 ~G~NGaGKSTLl~~i~G 48 (173)
T cd03230 32 LGPNGAGKTTLIKIILG 48 (173)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 87899799999999976
No 167
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=37.24 E-value=17 Score=18.66 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+-+|||||+..|.-.
T Consensus 36 iGpNGaGKSTLlk~I~Gl 53 (251)
T PRK09544 36 LGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 989998899999999668
No 168
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=37.16 E-value=17 Score=18.76 Aligned_cols=19 Identities=47% Similarity=0.852 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 97454450268999987434
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGE 20 (80)
Q Consensus 1 mglsesgkttlleaiflfge 20 (80)
.|++.+||||++..+. .++
T Consensus 21 lG~~~sGKTsil~~l~-~~~ 39 (174)
T cd04153 21 VGLDNAGKTTILYQFL-LGE 39 (174)
T ss_pred ECCCCCCHHHHHHHHH-CCC
T ss_conf 9899998899999997-399
No 169
>PRK05480 uridine kinase; Provisional
Probab=37.13 E-value=19 Score=18.48 Aligned_cols=15 Identities=53% Similarity=0.691 Sum_probs=12.7
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-|-|||||+-+.+-
T Consensus 13 G~SgSGKTT~a~~L~ 27 (209)
T PRK05480 13 GGSGSGKTTVASTIY 27 (209)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 999778999999999
No 170
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=36.95 E-value=19 Score=18.47 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=14.4
Q ss_pred CCCCCCHHHHHHHHH-HHH
Q ss_conf 745445026899998-743
Q gi|254781089|r 2 GLSESGKTTLLEAIF-LFG 19 (80)
Q Consensus 2 glsesgkttlleaif-lfg 19 (80)
|-|-|||||+...|. .|+
T Consensus 15 G~SgSGKTTv~~~l~~~~~ 33 (218)
T COG0572 15 GGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CCCCCCHHHHHHHHHHHHC
T ss_conf 7987788999999999828
No 171
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=36.93 E-value=16 Score=18.79 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-+|||||+..|.
T Consensus 29 iGpNGaGKSTLlk~i~ 44 (245)
T PRK03695 29 VGPNGAGKSTLLARMA 44 (245)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9789941999999984
No 172
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=36.91 E-value=16 Score=18.82 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+-+|||||+.+|.-+
T Consensus 34 iGpNGaGKSTLlk~i~Gl 51 (255)
T PRK11231 34 IGPNGCGKSTLLKCFARL 51 (255)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998199999999759
No 173
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=36.65 E-value=16 Score=18.87 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-+||+||+.+|-..
T Consensus 37 IG~SGaGKSTLlr~i~gL 54 (343)
T PRK11153 37 IGASGAGKSTLIRCVNLL 54 (343)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998699999999659
No 174
>PRK07667 uridine kinase; Provisional
Probab=36.58 E-value=19 Score=18.40 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=12.4
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|.|-|||||+-+.+-
T Consensus 21 G~sgSGKTTla~~L~ 35 (190)
T PRK07667 21 GLSRSGKTTFVANLK 35 (190)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 989788999999999
No 175
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=36.30 E-value=20 Score=18.28 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|.+-+|||||+.+|.-+
T Consensus 37 iGpnGaGKSTL~~~i~Gl 54 (255)
T PRK11300 37 IGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 989996499999999679
No 176
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.25 E-value=17 Score=18.73 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-||||||+..+-
T Consensus 39 iG~nGsGKSTLl~~l~ 54 (286)
T PRK13646 39 VGQTGSGKSTLIQNIN 54 (286)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999981999999997
No 177
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=36.17 E-value=23 Score=18.03 Aligned_cols=17 Identities=59% Similarity=0.819 Sum_probs=13.8
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 74544502689999874
Q gi|254781089|r 2 GLSESGKTTLLEAIFLF 18 (80)
Q Consensus 2 glsesgkttlleaiflf 18 (80)
|-..|||||++.++.-+
T Consensus 32 G~tGSGKTTll~al~~~ 48 (186)
T cd01130 32 GGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 99999899999999961
No 178
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=36.03 E-value=18 Score=18.56 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|.+-||||||+..|.
T Consensus 292 ~G~nGsGKSTLl~~l~ 307 (490)
T PRK10938 292 VGPNGAGKSTLLSLIT 307 (490)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 8678887999999980
No 179
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=35.84 E-value=23 Score=17.97 Aligned_cols=37 Identities=38% Similarity=0.497 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHHHHHHHH-HHH---HHEECCCCEEEEEEHH
Q ss_conf 745445026899998743-432---1012388124676102
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFG-EAL---ALALSNDPVSVFLKSD 38 (80)
Q Consensus 2 glsesgkttlleaiflfg-eal---alalsndpvsvflksd 38 (80)
|-.-|||.||+-|||-|- |.- -+.--.|||--.|.|.
T Consensus 156 G~TGSGKSTl~AaiY~~~l~t~pdRKivT~EDPvEY~L~~~ 196 (374)
T TIGR02525 156 GETGSGKSTLAAAIYRHCLETYPDRKIVTYEDPVEYILGSP 196 (374)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEEEECCCC
T ss_conf 77897289999999998507488970798657721231885
No 180
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=35.72 E-value=18 Score=18.56 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|.-+
T Consensus 39 ~G~sGsGKSTLlk~i~gl 56 (225)
T PRK10247 39 TGPSGCGKSTLLKIVASL 56 (225)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999646
No 181
>pfam06395 CDC24 CDC24 Calponin. Is a calponin homology domain.
Probab=35.71 E-value=25 Score=17.80 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHEECCCCEEEEEEHHHHCCCCCCCEEEE
Q ss_conf 89999874343210123881246761022023113430257
Q gi|254781089|r 11 LLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFF 51 (80)
Q Consensus 11 lleaiflfgealalalsndpvsvflksdvfdgisknqygff 51 (80)
--.|||.|-.|.-..|+-++-+.|.-||+| +.+..||.
T Consensus 42 cK~si~~Fl~ack~~L~~p~~~~FtIsDl~---~~~T~gfv 79 (89)
T pfam06395 42 CKKSVYDFLLACKQELGFPDEDCFTISDLF---GDDTTGFV 79 (89)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEHHHH---CCCCCCHH
T ss_conf 889999999999997599950127520620---57874613
No 182
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=35.55 E-value=18 Score=18.60 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-||||||+..|--
T Consensus 32 ~G~NGsGKSTLlk~i~G 48 (195)
T PRK13541 32 KGANGCGKSSLLRMIAG 48 (195)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 99999819999999967
No 183
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=35.54 E-value=18 Score=18.53 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-+|||||+..|.-
T Consensus 32 iGpNGaGKSTLlk~i~G 48 (255)
T cd03236 32 VGPNGIGKSTALKILAG 48 (255)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 89999709999999967
No 184
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=35.46 E-value=18 Score=18.64 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-..+|||||++++..
T Consensus 8 iGHvd~GKTTL~~~Ll~ 24 (194)
T cd01891 8 IAHVDHGKTTLVDALLK 24 (194)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 90689879999999999
No 185
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=35.44 E-value=18 Score=18.55 Aligned_cols=15 Identities=47% Similarity=0.913 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+|++.+|||+++..+
T Consensus 20 lG~~~sGKTsll~~l 34 (173)
T cd04154 20 LGLDNAGKTTILKKL 34 (173)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 989997889999998
No 186
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=35.41 E-value=20 Score=18.37 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=10.3
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|.+.||||||+.+|+
T Consensus 280 ~G~nGsGKsTL~~~l~ 295 (491)
T PRK10982 280 AGLVGAKRTDIVETLF 295 (491)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 7899997889999981
No 187
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=35.40 E-value=18 Score=18.60 Aligned_cols=16 Identities=25% Similarity=0.769 Sum_probs=11.9
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|.+.||||||+.++.
T Consensus 285 vG~nGsGKSTL~k~L~ 300 (501)
T PRK11288 285 FGLVGAGRSELMKLLY 300 (501)
T ss_pred ECCCCCCHHHHHHHHC
T ss_conf 5688864879999843
No 188
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.13 E-value=16 Score=18.82 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-||||||+..+-
T Consensus 39 iG~nGsGKSTLl~~l~ 54 (287)
T PRK13637 39 IGHTGSGKSTLIQHLN 54 (287)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999939999999997
No 189
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=35.10 E-value=17 Score=18.70 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-||||||+..|--+
T Consensus 36 lGpsG~GKTTllr~iaGl 53 (358)
T PRK11650 36 VGPSGCGKSTLLRMVAGL 53 (358)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999863699999999769
No 190
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.04 E-value=17 Score=18.65 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-||||||+..+-
T Consensus 42 vG~nGsGKSTLlk~l~ 57 (273)
T PRK13632 42 LGHNGSGKSTISKILT 57 (273)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999986999999997
No 191
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.03 E-value=17 Score=18.67 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|.-+
T Consensus 36 vG~nGsGKSTL~~~l~Gl 53 (276)
T PRK13650 36 IGHNGSGKSTTVRLIDGL 53 (276)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998799999999738
No 192
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=34.97 E-value=20 Score=18.38 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-..+|||||++++.-.
T Consensus 5 iGh~d~GKTTL~~~Ll~~ 22 (189)
T cd00881 5 AGHVDHGKTTLTERLLYV 22 (189)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 917998999999999976
No 193
>PRK02224 chromosome segregation protein; Provisional
Probab=34.84 E-value=25 Score=17.85 Aligned_cols=19 Identities=63% Similarity=1.078 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHHH--HHHH
Q ss_conf 745445026899998--7434
Q gi|254781089|r 2 GLSESGKTTLLEAIF--LFGE 20 (80)
Q Consensus 2 glsesgkttlleaif--lfge 20 (80)
|...|||+|+++||. |||.
T Consensus 30 G~NGsGKSsIldAI~~aL~g~ 50 (880)
T PRK02224 30 GLNGSGKSSLLEACFFALYGS 50 (880)
T ss_pred CCCCCCHHHHHHHHHHHHHCC
T ss_conf 999998899999999998088
No 194
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=34.82 E-value=19 Score=18.49 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-+|||||+..|--
T Consensus 34 lG~NGaGKSTLl~~i~G 50 (220)
T cd03263 34 LGHNGAGKTTTLKMLTG 50 (220)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 98999739999999966
No 195
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=34.78 E-value=20 Score=18.28 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+-||||||+..|.=+
T Consensus 37 iG~NGaGKSTLl~~i~G~ 54 (237)
T PRK11614 37 IGANGAGKTTLLGTLCGD 54 (237)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 879997599999999679
No 196
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=34.52 E-value=21 Score=18.21 Aligned_cols=17 Identities=53% Similarity=0.696 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|.-.||||||+..+.-
T Consensus 6 tGFLGsGKTTll~~ll~ 22 (174)
T pfam02492 6 TGFLGSGKTTLLEHLLR 22 (174)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 34887889999999998
No 197
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=34.35 E-value=19 Score=18.41 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
+|-|-||||||+..|.-+-
T Consensus 36 vG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 36 IGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred ECCCCCHHHHHHHHHHCCC
T ss_conf 9999985999999996725
No 198
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=34.26 E-value=18 Score=18.55 Aligned_cols=18 Identities=50% Similarity=0.606 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||||||..|--+
T Consensus 49 lGpSGsGKSTLlr~iaGl 66 (378)
T PRK09452 49 LGPSGCGKTTVLRLIAGF 66 (378)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 989997699999999769
No 199
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=34.25 E-value=26 Score=17.76 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHHH
Q ss_conf 74544502689999-874343210
Q gi|254781089|r 2 GLSESGKTTLLEAI-FLFGEALAL 24 (80)
Q Consensus 2 glsesgkttlleai-flfgealal 24 (80)
|-.-|||+++++|| |.+|+.-+-
T Consensus 29 G~nGsGKSni~~ai~~~~g~~~~~ 52 (178)
T cd03239 29 GPNGSGKSNIVDAICFVLGGKAAK 52 (178)
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 999887789999999998664276
No 200
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=34.18 E-value=19 Score=18.44 Aligned_cols=18 Identities=44% Similarity=0.552 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||+||+..+.-+
T Consensus 34 vG~sGsGKSTLl~ll~gl 51 (173)
T cd03246 34 IGPSGSGKSTLARLILGL 51 (173)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998099999999666
No 201
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.04 E-value=21 Score=18.26 Aligned_cols=18 Identities=50% Similarity=0.595 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+-+|||||+.+|.-.
T Consensus 31 ~G~nGaGKSTLl~~l~gl 48 (157)
T cd00267 31 VGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 878899989999999588
No 202
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.62 E-value=22 Score=18.09 Aligned_cols=19 Identities=47% Similarity=0.524 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
.|-|-||||||+..+.-+-
T Consensus 34 vG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 34 VGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred ECCCCCHHHHHHHHHHCCC
T ss_conf 9899982999999996676
No 203
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.35 E-value=20 Score=18.32 Aligned_cols=17 Identities=35% Similarity=0.347 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-||||||+..|.-
T Consensus 34 iG~nGsGKSTL~~~l~G 50 (274)
T PRK13644 34 IGKNGSGKSTLALHLNG 50 (274)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99999809999999970
No 204
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.32 E-value=20 Score=18.30 Aligned_cols=17 Identities=41% Similarity=0.431 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-|||+||+.++.=
T Consensus 58 IG~nGsGKSTL~~~l~G 74 (320)
T PRK13631 58 IGNSGSGKSTLVTHFNG 74 (320)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 94999849999999975
No 205
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=33.14 E-value=22 Score=18.09 Aligned_cols=18 Identities=44% Similarity=0.720 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||+||+..|.-+
T Consensus 36 vG~sGsGKSTLl~ll~gl 53 (221)
T cd03244 36 VGRTGSGKSSLLLALFRL 53 (221)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999999899999999679
No 206
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.05 E-value=23 Score=17.98 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
.|-|-|||+||+..+.-+-
T Consensus 35 vG~sGsGKSTLl~ll~gl~ 53 (229)
T cd03254 35 VGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred ECCCCCHHHHHHHHHHCCC
T ss_conf 9999980999999996686
No 207
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=33.01 E-value=30 Score=17.39 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHHEECCC
Q ss_conf 745445026899998-7434321012388
Q gi|254781089|r 2 GLSESGKTTLLEAIF-LFGEALALALSND 29 (80)
Q Consensus 2 glsesgkttlleaif-lfgealalalsnd 29 (80)
|-|-|||||+..+|- .||+.....++-|
T Consensus 6 G~SGSGKTTv~~~i~~ifg~~~v~vI~~D 34 (273)
T cd02026 6 GDSGCGKSTFLRRLTSLFGSDLVTVICLD 34 (273)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 88878699999999998584876999657
No 208
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=32.98 E-value=20 Score=18.34 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-|||+||+..+.=
T Consensus 34 vG~sGsGKSTLl~~l~G 50 (178)
T cd03247 34 LGRSGSGKSTLLQLLTG 50 (178)
T ss_pred ECCCCCHHHHHHHHHHH
T ss_conf 99998759999999986
No 209
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.90 E-value=20 Score=18.36 Aligned_cols=18 Identities=44% Similarity=0.517 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||||++..|--+
T Consensus 33 lGpSG~GKSTllr~i~gl 50 (242)
T cd03295 33 IGPSGSGKTTTMKMINRL 50 (242)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999995699999999759
No 210
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=32.85 E-value=22 Score=18.10 Aligned_cols=18 Identities=44% Similarity=0.490 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+-+|||||+..|.-+
T Consensus 33 ~G~NGaGKSTLlkli~Gl 50 (200)
T PRK13540 33 KGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 889998799999999778
No 211
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=32.63 E-value=19 Score=18.48 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+-+|||||+.+|.=+
T Consensus 39 iGpNGaGKSTLlk~i~Gl 56 (265)
T PRK10253 39 IGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999883999999999749
No 212
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=32.44 E-value=21 Score=18.21 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-||||||+..|-=
T Consensus 54 lG~NGaGKSTLl~~i~G 70 (224)
T cd03220 54 IGRNGAGKSTLLRLLAG 70 (224)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 97999819999999975
No 213
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=32.09 E-value=21 Score=18.27 Aligned_cols=18 Identities=44% Similarity=0.523 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-+||||||..|--+
T Consensus 35 lGpsG~GKSTllr~i~Gl 52 (369)
T PRK11000 35 VGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999973699999999779
No 214
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.04 E-value=22 Score=18.11 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-+|||||+.+|.=
T Consensus 33 iGpNGaGKSTLlk~l~G 49 (271)
T PRK13638 33 VGANGCGKSTLFMNLSG 49 (271)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 99999809999999966
No 215
>KOG0090 consensus
Probab=32.00 E-value=10 Score=19.90 Aligned_cols=13 Identities=62% Similarity=0.999 Sum_probs=9.9
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 9745445026899
Q gi|254781089|r 1 MGLSESGKTTLLE 13 (80)
Q Consensus 1 mglsesgkttlle 13 (80)
.|+|+||||+|+-
T Consensus 44 ~Gl~dSGKT~LF~ 56 (238)
T KOG0090 44 VGLSDSGKTSLFT 56 (238)
T ss_pred EECCCCCCEEEEE
T ss_conf 9327898335542
No 216
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.80 E-value=23 Score=18.01 Aligned_cols=19 Identities=47% Similarity=0.511 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
.|.+-+|||||+..|.-+-
T Consensus 32 iGpnGaGKSTl~~~i~Gl~ 50 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred ECCCCCHHHHHHHHHHCCC
T ss_conf 9999973999999997599
No 217
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=31.80 E-value=24 Score=17.94 Aligned_cols=34 Identities=38% Similarity=0.464 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHHHH----------HHHHHHEECCCCEEEEE
Q ss_conf 74544502689999874----------34321012388124676
Q gi|254781089|r 2 GLSESGKTTLLEAIFLF----------GEALALALSNDPVSVFL 35 (80)
Q Consensus 2 glsesgkttlleaiflf----------gealalalsndpvsvfl 35 (80)
|=.-|||||++.|+.-+ -++.-+.+++.|-.|-|
T Consensus 165 GGTgSGKTTf~kal~~~IP~~ER~iTIED~~E~~~~hhpN~V~L 208 (328)
T TIGR02788 165 GGTGSGKTTFLKALVKEIPKDERLITIEDTRELFLPHHPNKVHL 208 (328)
T ss_pred ECCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEE
T ss_conf 06897189999999732762252788852011478889864565
No 218
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=31.77 E-value=50 Score=16.21 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEE
Q ss_conf 74544502689999874343210123881246761
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALSNDPVSVFLK 36 (80)
Q Consensus 2 glsesgkttlleaiflfgealalalsndpvsvflk 36 (80)
|.+.||||+++..+.+ .+++..|.+.+.+++-
T Consensus 45 G~tGsGKS~~l~~li~---sl~~~~~p~~v~l~li 76 (202)
T pfam01580 45 GATGSGKSTFLNTLIL---SLAARHSPEEVRLYLI 76 (202)
T ss_pred CCCCCCCCHHHHHHHH---HHHHHCCCCEEEEEEE
T ss_conf 5899980099999999---9987379620699997
No 219
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=31.68 E-value=21 Score=18.27 Aligned_cols=18 Identities=44% Similarity=0.635 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-||||||+..|--+
T Consensus 51 lGpsGsGKSTllr~i~Gl 68 (377)
T PRK11607 51 LGASGCGKSTLLRMLAGF 68 (377)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999984899999999769
No 220
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.61 E-value=21 Score=18.24 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-|||+||+..|-
T Consensus 39 iG~sGsGKSTL~~~l~ 54 (277)
T PRK13642 39 IGQNGSGKSTTARLID 54 (277)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999968999999996
No 221
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=31.52 E-value=21 Score=18.17 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-+|||||+..|.
T Consensus 31 iGpNGaGKSTLlk~l~ 46 (246)
T cd03237 31 LGPNGIGKTTFIKMLA 46 (246)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9799976999999997
No 222
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.50 E-value=22 Score=18.13 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-||||||+..+.=
T Consensus 39 vG~nGsGKSTL~k~l~G 55 (279)
T PRK13635 39 VGHNGSGKSTLAKLLNG 55 (279)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99999659999999972
No 223
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=31.44 E-value=23 Score=17.96 Aligned_cols=15 Identities=47% Similarity=0.826 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+|.+.+|||+++..+
T Consensus 20 lG~~~vGKTsll~~~ 34 (174)
T pfam00025 20 LGLDNAGKTTILYKL 34 (174)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 999999889999999
No 224
>pfam00503 G-alpha G-protein alpha subunit. G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase.
Probab=31.43 E-value=24 Score=17.86 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=6.0
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 7454450268999
Q gi|254781089|r 2 GLSESGKTTLLEA 14 (80)
Q Consensus 2 glsesgkttllea 14 (80)
|-+||||+|++.-
T Consensus 35 G~geSGKSTi~KQ 47 (350)
T pfam00503 35 GAGESGKSTILKQ 47 (350)
T ss_pred CCCCCCHHHHHHH
T ss_conf 8998759999999
No 225
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=31.33 E-value=25 Score=17.78 Aligned_cols=17 Identities=47% Similarity=0.491 Sum_probs=12.7
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 74544502689999874
Q gi|254781089|r 2 GLSESGKTTLLEAIFLF 18 (80)
Q Consensus 2 glsesgkttlleaiflf 18 (80)
|-..|||||++.|+.-+
T Consensus 151 GgTGSGKTTllnaL~~~ 167 (323)
T PRK13833 151 GGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 17777568999999986
No 226
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=31.31 E-value=22 Score=18.08 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-||||||+..+-
T Consensus 43 iG~nGsGKSTL~r~l~ 58 (281)
T PRK13633 43 LGHNGSGKSTIAKHMN 58 (281)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999984999999997
No 227
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=31.30 E-value=24 Score=17.91 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||+||..++--+
T Consensus 39 vGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 39 VGESGSGKSTLARLLAGL 56 (252)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 848989888999999565
No 228
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=31.17 E-value=24 Score=17.92 Aligned_cols=15 Identities=47% Similarity=0.789 Sum_probs=13.0
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
.|++.+|||+|+..+
T Consensus 5 lG~~~vGKTsll~~l 19 (158)
T cd00878 5 LGLDGAGKTTILYKL 19 (158)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 999999889999999
No 229
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=31.01 E-value=32 Score=17.26 Aligned_cols=49 Identities=35% Similarity=0.310 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHHHHHH--HHHEECCCCEEEEEEHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 74544502689999874343--210123881246761022023113430257667875
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEA--LALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKV 57 (80)
Q Consensus 2 glsesgkttlleaiflfgea--lalalsndpvsvflksdvfdgisknqygfftgkikv 57 (80)
|-.-|||||++.|+.-+=.. -....-.||+-..+. .+||.-..+.+..+
T Consensus 146 G~TGSGKTT~l~all~~i~~~~~riitiED~~El~l~-------~~~~v~l~~~~~~~ 196 (283)
T pfam00437 146 GGTGSGKTTLLYALLNEINTDDERIVTIEDPVEIQLE-------GPNQVQLNTRLAGV 196 (283)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEECCC-------CCCEEEEEECCCCC
T ss_conf 8999988999999998408777627873378523179-------88789998558876
No 230
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=30.98 E-value=22 Score=18.14 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9745445026899998743
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 1 mglsesgkttlleaiflfg 19 (80)
.|-+-+|||||+..|.-.-
T Consensus 32 iG~nGaGKSTll~~l~G~~ 50 (182)
T cd03215 32 AGLVGNGQTELAEALFGLR 50 (182)
T ss_pred ECCCCCCCCHHHHHHCCCC
T ss_conf 8889999263778766986
No 231
>PTZ00301 uridine kinase; Provisional
Probab=30.72 E-value=27 Score=17.61 Aligned_cols=15 Identities=47% Similarity=0.609 Sum_probs=12.1
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-|-|||||+-..|.
T Consensus 10 GgSgSGKTT~a~~i~ 24 (210)
T PTZ00301 10 GASGSGKSSLSTNIV 24 (210)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 887678999999999
No 232
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.48 E-value=25 Score=17.83 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-|-|||+||+..|--
T Consensus 41 iG~sGsGKSTLl~ll~G 57 (269)
T PRK13648 41 VGHNGSGKSTIAKLMIG 57 (269)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 99999979999999964
No 233
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=30.40 E-value=25 Score=17.84 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|-|-||||||..+|.-
T Consensus 48 vGeSGsGKSTl~~~i~g 64 (330)
T PRK09473 48 VGESGSGKSQTAFALMG 64 (330)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 86898779999999976
No 234
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=30.37 E-value=29 Score=17.44 Aligned_cols=15 Identities=53% Similarity=0.731 Sum_probs=12.1
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
||.|-|||+|.-+++
T Consensus 1 MGVsG~GKStvg~~l 15 (161)
T COG3265 1 MGVSGSGKSTVGSAL 15 (161)
T ss_pred CCCCCCCHHHHHHHH
T ss_conf 987765777999999
No 235
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=30.20 E-value=24 Score=17.92 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||+||+..|.-+
T Consensus 46 vG~sGsGKSTL~~ll~gl 63 (226)
T cd03248 46 VGPSGSGKSTVVALLENF 63 (226)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998499999999645
No 236
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=30.07 E-value=29 Score=17.49 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||+||+..+.-+
T Consensus 35 vG~sGsGKSTLl~ll~gl 52 (238)
T cd03249 35 VGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ECCCCCCHHHHHHHHHHC
T ss_conf 999999899999998238
No 237
>PRK01156 chromosome segregation protein; Provisional
Probab=30.06 E-value=33 Score=17.17 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHH--HHHHH
Q ss_conf 745445026899998--74343
Q gi|254781089|r 2 GLSESGKTTLLEAIF--LFGEA 21 (80)
Q Consensus 2 glsesgkttlleaif--lfgea 21 (80)
|-..|||+|+++||. |||+.
T Consensus 30 G~NGaGKStIldAI~~aL~g~~ 51 (895)
T PRK01156 30 GKNGAGKSSIVDAIRFALFTDK 51 (895)
T ss_pred CCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9999987899999999977897
No 238
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=30.05 E-value=23 Score=18.02 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-+|||||+..|.-+
T Consensus 44 iG~nGaGKSTLlr~i~Gl 61 (257)
T PRK11247 44 VGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 989988899999999658
No 239
>PRK06696 uridine kinase; Validated
Probab=30.01 E-value=29 Score=17.47 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=12.5
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|.+.||||||-..+.
T Consensus 33 G~~gSGKTTlA~~La 47 (227)
T PRK06696 33 GITASGKTTFANELA 47 (227)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 899878799999999
No 240
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=29.76 E-value=31 Score=17.34 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|.+-+|||||+.+|.=
T Consensus 34 iGpNGaGKSTLl~~i~G 50 (242)
T TIGR03411 34 IGPNGAGKTTMMDVITG 50 (242)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 98999759999999967
No 241
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=29.72 E-value=22 Score=18.14 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-||||||+.+|..+
T Consensus 47 VGeSGsGKSTL~~~l~gl 64 (327)
T PRK11308 47 VGESGCGKSTLARLLTMI 64 (327)
T ss_pred ECCCCHHHHHHHHHHHCC
T ss_conf 999831999999999569
No 242
>pfam01293 PEPCK_ATP Phosphoenolpyruvate carboxykinase.
Probab=29.68 E-value=28 Score=17.53 Aligned_cols=11 Identities=73% Similarity=1.026 Sum_probs=9.2
Q ss_pred CCCCCCCHHHH
Q ss_conf 97454450268
Q gi|254781089|r 1 MGLSESGKTTL 11 (80)
Q Consensus 1 mglsesgkttl 11 (80)
.|||-+|||||
T Consensus 216 FGLSGTGKTTL 226 (451)
T pfam01293 216 FGLSGTGKTTL 226 (451)
T ss_pred EECCCCCCEEE
T ss_conf 82167773345
No 243
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=29.61 E-value=28 Score=17.59 Aligned_cols=18 Identities=44% Similarity=0.691 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||+||+.++.-+
T Consensus 36 vG~sGsGKSTLl~lL~gl 53 (275)
T cd03289 36 LGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 999999799999999603
No 244
>PRK06217 hypothetical protein; Validated
Probab=29.59 E-value=28 Score=17.57 Aligned_cols=22 Identities=55% Similarity=0.598 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHE
Q ss_conf 9745445026899998743432101
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALA 25 (80)
Q Consensus 1 mglsesgkttlleaiflfgealala 25 (80)
+|.|-|||+||-.++ ++.+.+.
T Consensus 7 ~G~sGsGkSTla~~L---a~~l~~~ 28 (185)
T PRK06217 7 TGASGSGTTTLGAAL---AEALDLP 28 (185)
T ss_pred ECCCCCCHHHHHHHH---HHHHCCC
T ss_conf 789988789999999---9975989
No 245
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=29.38 E-value=27 Score=17.62 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+..|-
T Consensus 39 iG~nGsGKSTL~k~l~ 54 (304)
T PRK13651 39 IGQTGSGKTTFIEHLN 54 (304)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 8799985999999996
No 246
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=29.31 E-value=37 Score=16.88 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=25.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECC-CCEEEEEEHHHHCCCC
Q ss_conf 9745445026899998743432101238-8124676102202311
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSN-DPVSVFLKSDVFDGIS 44 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsn-dpvsvflksdvfdgis 44 (80)
.|...||||.+|+|+- +.+++ ++.-.|..+|-.-+++
T Consensus 29 IGeN~~GKsslLdAL~-------l~l~~~~~~~~f~~~d~~~~~~ 66 (581)
T COG3593 29 IGENNSGKSSLLDALR-------LLLDPESDLYSFTLDDFHFPIS 66 (581)
T ss_pred ECCCCCCHHHHHHHHH-------HHCCCCCCCCCEEECCCCCCHH
T ss_conf 7678755278999999-------9708765556166146755704
No 247
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=29.25 E-value=26 Score=17.76 Aligned_cols=16 Identities=44% Similarity=0.582 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+..|-
T Consensus 56 lG~NGaGKSTLlk~I~ 71 (264)
T PRK13546 56 VGINGSGKSTLSNIIG 71 (264)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9899861999999996
No 248
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=29.24 E-value=31 Score=17.34 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=12.5
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
||---||||+|+|...
T Consensus 19 ~Gp~GSGKTaLie~~~ 34 (202)
T COG0378 19 GGPPGSGKTALIEKTL 34 (202)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 1799867899999999
No 249
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=28.98 E-value=31 Score=17.30 Aligned_cols=18 Identities=44% Similarity=0.429 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||+||+..|.-+
T Consensus 69 VG~sGSGKSTLl~lL~gl 86 (282)
T cd03291 69 TGSTGSGKTSLLMLILGE 86 (282)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998199999999578
No 250
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.85 E-value=26 Score=17.74 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=13.6
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-||||||+..+--
T Consensus 37 iG~NGsGKSTLl~~l~G 53 (273)
T PRK13647 37 LGPNGAGKSTLLLHLNG 53 (273)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99999759999999966
No 251
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=28.83 E-value=29 Score=17.49 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=9.0
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+|-.||||+|++.-+
T Consensus 27 LG~geSGKSTi~KQm 41 (342)
T smart00275 27 LGAGESGKSTILKQM 41 (342)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 779987599999999
No 252
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=28.77 E-value=27 Score=17.64 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-+-+|||||+..|.-+
T Consensus 32 lGpNGAGKSTll~~i~Gl 49 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999996199999999779
No 253
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=28.46 E-value=32 Score=17.25 Aligned_cols=34 Identities=35% Similarity=0.435 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHHHHH----------HHHHHHEECCCCEEEEE
Q ss_conf 74544502689999874----------34321012388124676
Q gi|254781089|r 2 GLSESGKTTLLEAIFLF----------GEALALALSNDPVSVFL 35 (80)
Q Consensus 2 glsesgkttlleaiflf----------gealalalsndpvsvfl 35 (80)
|-.-|||||++.|+.-+ -+...|.|.+.|-.|.+
T Consensus 167 G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL~l~~~pn~v~l 210 (332)
T PRK13900 167 GGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSSHPNRVHL 210 (332)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCEEEE
T ss_conf 88898899999999835895353566314066356668888999
No 254
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=28.42 E-value=28 Score=17.53 Aligned_cols=15 Identities=53% Similarity=0.691 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-+-|||||+|.+|-
T Consensus 28 GpN~sGKSt~Lr~i~ 42 (162)
T cd03227 28 GPNGSGKSTILDAIG 42 (162)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 998775799999999
No 255
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.22 E-value=26 Score=17.71 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-||||||+..+-
T Consensus 43 iG~nGsGKSTL~~~l~ 58 (289)
T PRK13645 43 IGTTGSGKSTMIQLTN 58 (289)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999957999999996
No 256
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=28.22 E-value=29 Score=17.50 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|.+-+|||||+..|.=
T Consensus 32 vG~nGaGKSTl~~~i~G 48 (163)
T cd03216 32 LGENGAGKSTLMKILSG 48 (163)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 98899899999999957
No 257
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=28.15 E-value=32 Score=17.21 Aligned_cols=16 Identities=44% Similarity=0.546 Sum_probs=13.0
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7454450268999987
Q gi|254781089|r 2 GLSESGKTTLLEAIFL 17 (80)
Q Consensus 2 glsesgkttlleaifl 17 (80)
|-.-|||||||.++.-
T Consensus 35 GpNG~GKSTLLk~l~~ 50 (258)
T COG1120 35 GPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCCCCCHHHHHHHHHC
T ss_conf 9988899999999865
No 258
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=28.04 E-value=28 Score=17.52 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-+|||||+..|.
T Consensus 32 ~G~NGsGKTTl~~~l~ 47 (144)
T cd03221 32 VGRNGAGKSTLLKLIA 47 (144)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 9899984999999984
No 259
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=27.95 E-value=29 Score=17.48 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHHHHHE
Q ss_conf 5026899998743432101
Q gi|254781089|r 7 GKTTLLEAIFLFGEALALA 25 (80)
Q Consensus 7 gkttlleaiflfgealala 25 (80)
|-..|||+|.|-.|.+.|.
T Consensus 266 GId~LLe~IlL~AE~leLk 284 (610)
T PRK12312 266 GIDELLDSILLLAEILNLK 284 (610)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999987652
No 260
>PRK10744 phosphate transporter subunit; Provisional
Probab=27.92 E-value=29 Score=17.50 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-+|||||+..|--+
T Consensus 42 iG~nGaGKSTLlk~i~gl 59 (257)
T PRK10744 42 IGPSGCGKSTLLRTFNKM 59 (257)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 999998199999999876
No 261
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=27.80 E-value=31 Score=17.34 Aligned_cols=14 Identities=43% Similarity=0.710 Sum_probs=6.7
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 74544502689999
Q gi|254781089|r 2 GLSESGKTTLLEAI 15 (80)
Q Consensus 2 glsesgkttlleai 15 (80)
|.+-+|||||+..|
T Consensus 357 G~NGsGKSTLlk~l 370 (556)
T PRK11819 357 GPNGAGKSTLFKMI 370 (556)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 89877588999998
No 262
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=27.69 E-value=32 Score=17.25 Aligned_cols=16 Identities=31% Similarity=0.746 Sum_probs=9.7
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|.+-||||||+.+|+
T Consensus 284 ~G~nGsGKsTL~~~l~ 299 (501)
T PRK10762 284 SGLMGAGRTELMKVLY 299 (501)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 6788876889999981
No 263
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=27.67 E-value=33 Score=17.15 Aligned_cols=15 Identities=53% Similarity=0.953 Sum_probs=12.9
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
.|++-+|||+++..+
T Consensus 5 lG~~~~GKTsll~~l 19 (167)
T cd04160 5 LGLDNAGKTTFLEQL 19 (167)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 999998888999988
No 264
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=27.59 E-value=34 Score=17.11 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-+||+|||..|-=+
T Consensus 35 lGpSGcGKSTLLriiAGL 52 (248)
T COG1116 35 LGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 899978899999999687
No 265
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=27.57 E-value=28 Score=17.53 Aligned_cols=17 Identities=47% Similarity=0.544 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-||||||+..|.-
T Consensus 34 IGPNGAGKSTLLk~I~G 50 (409)
T PRK09536 34 VGPNGAGKTTLLRAMNG 50 (409)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99987279999999966
No 266
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=27.47 E-value=25 Score=17.80 Aligned_cols=19 Identities=47% Similarity=0.557 Sum_probs=13.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHEECC
Q ss_conf 45445026899998743432101238
Q gi|254781089|r 3 LSESGKTTLLEAIFLFGEALALALSN 28 (80)
Q Consensus 3 lsesgkttlleaiflfgealalalsn 28 (80)
-..+||||||--| |-.+||
T Consensus 131 PPq~GKTTlLRDl-------aR~~St 149 (282)
T TIGR02858 131 PPQCGKTTLLRDL-------ARILST 149 (282)
T ss_pred CCCCCCCCHHHHH-------HHHHHC
T ss_conf 8898851048889-------888607
No 267
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=27.38 E-value=36 Score=16.98 Aligned_cols=35 Identities=37% Similarity=0.364 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHHH----------HHEECCCCEEEEEEHHH
Q ss_conf 5445026899998743432----------10123881246761022
Q gi|254781089|r 4 SESGKTTLLEAIFLFGEAL----------ALALSNDPVSVFLKSDV 39 (80)
Q Consensus 4 sesgkttlleaiflfgeal----------alalsndpvsvflksdv 39 (80)
.-|||||||.|.-.|-... -|. ...|--|.|.+.-
T Consensus 182 TGSGKTTlLNal~~~i~~~eRvItiEDtaELq-l~~ph~vrL~TR~ 226 (355)
T COG4962 182 TGSGKTTLLNALSGFIDSDERVITIEDTAELQ-LAHPHVVRLETRP 226 (355)
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEEEEEHHHHC-CCCCCEEEEEECC
T ss_conf 78879999999971579765089981236644-6998557886348
No 268
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=27.18 E-value=33 Score=17.19 Aligned_cols=18 Identities=50% Similarity=0.599 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||+||+..+.-+
T Consensus 34 vG~sGsGKSTll~ll~gl 51 (237)
T cd03252 34 VGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999998599999999677
No 269
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=27.09 E-value=35 Score=17.01 Aligned_cols=15 Identities=53% Similarity=0.685 Sum_probs=11.6
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|=.-||||||-.|+.
T Consensus 146 GGTGSGKTTLaNAll 160 (315)
T TIGR02782 146 GGTGSGKTTLANALL 160 (315)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 145885799999999
No 270
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.05 E-value=28 Score=17.51 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-||||||+..+-
T Consensus 40 iG~nGsGKSTL~~~l~ 55 (283)
T PRK13640 40 IGHNGSGKSTISKLIN 55 (283)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999987999999996
No 271
>PRK04004 translation initiation factor IF-2; Validated
Probab=27.01 E-value=31 Score=17.31 Aligned_cols=16 Identities=50% Similarity=0.727 Sum_probs=8.8
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
||--..||||||.+|-
T Consensus 11 mGHVDhGKTsLLD~iR 26 (592)
T PRK04004 11 LGHVDHGKTTLLDKIR 26 (592)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 7873777636899986
No 272
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.68 E-value=30 Score=17.40 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+..|-
T Consensus 34 iG~nGsGKSTLl~~l~ 49 (275)
T PRK13639 34 LGPNGAGKSTLFLHFN 49 (275)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999964999999997
No 273
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.49 E-value=29 Score=17.45 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-||||||+..|.-
T Consensus 36 iG~NGaGKSTLl~~i~G 52 (277)
T PRK13652 36 IGPNGAGKSTLFKHFNG 52 (277)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99999479999999966
No 274
>CHL00189 infB translation initiation factor 2; Provisional
Probab=26.35 E-value=31 Score=17.29 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHHHHHHE
Q ss_conf 45026899998743432101
Q gi|254781089|r 6 SGKTTLLEAIFLFGEALALA 25 (80)
Q Consensus 6 sgkttlleaiflfgealala 25 (80)
.|-..|||+|.|-.|.+-|-
T Consensus 424 ~gId~LLE~IlL~AEvlELk 443 (770)
T CHL00189 424 TNIDKLLEMILLLAEIENLQ 443 (770)
T ss_pred CCHHHHHHHHHHHHHHHHCC
T ss_conf 88799999999998787523
No 275
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=26.35 E-value=33 Score=17.18 Aligned_cols=17 Identities=41% Similarity=0.708 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|-..+|||||++++..
T Consensus 9 vG~~n~GKSTL~n~Ll~ 25 (185)
T pfam00009 9 IGHVDHGKTTLTDALLY 25 (185)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 93899449999999971
No 276
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=26.18 E-value=30 Score=17.37 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=18.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEE
Q ss_conf 97454450268999987434321012388124676
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFL 35 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndpvsvfl 35 (80)
||-|-|||-|||.. ....|..+|--.|-
T Consensus 7 vGPSGaGKDtLl~~-------AR~~l~~~~r~~F~ 34 (183)
T TIGR02322 7 VGPSGAGKDTLLDY-------ARARLAGDPRVHFV 34 (183)
T ss_pred EECCCCCHHHHHHH-------HHHHHCCCCCEEEE
T ss_conf 70778867789999-------99970489965883
No 277
>PRK06761 hypothetical protein; Provisional
Probab=26.08 E-value=58 Score=15.86 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHH
Q ss_conf 74544502689999874343210123881246761022
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDV 39 (80)
Q Consensus 2 glsesgkttlleaiflfgealalalsndpvsvflksdv 39 (80)
|++-|||+|..+-+. +. |.-.+.+|..|+..|.
T Consensus 9 GlPGsGKSTta~~l~---d~--L~~~g~~v~~~~Egd~ 41 (281)
T PRK06761 9 GLPGFGKSTTAHLLN---DK--LSQLKIEVELFVEGDL 41 (281)
T ss_pred CCCCCCHHHHHHHHH---HH--HHHCCCCEEEEEECCC
T ss_conf 689998014999999---99--9866985389950789
No 278
>COG3911 Predicted ATPase [General function prediction only]
Probab=26.05 E-value=38 Score=16.84 Aligned_cols=21 Identities=48% Similarity=0.444 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 745445026899998743432
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEAL 22 (80)
Q Consensus 2 glsesgkttlleaiflfgeal 22 (80)
|-+-+||||||.|.---|+|.
T Consensus 16 GgpGaGKTtLL~aLa~~Gfat 36 (183)
T COG3911 16 GGPGAGKTTLLAALARAGFAT 36 (183)
T ss_pred CCCCCCHHHHHHHHHHCCCEE
T ss_conf 799976899999999758635
No 279
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.02 E-value=29 Score=17.49 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=12.9
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+..|-
T Consensus 39 iG~nGsGKSTLl~~l~ 54 (286)
T PRK13641 39 IGHTGSGKSTLMQHFN 54 (286)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999839999999996
No 280
>pfam10089 consensus
Probab=25.97 E-value=65 Score=15.61 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=19.6
Q ss_pred CCCEEEEEEEEEEEEEEE--ECCCCCCCEEEEEEE
Q ss_conf 343025766787511123--200148740110001
Q gi|254781089|r 45 KNQYGFFTGKIKVDAQFI--LSEKMDIPHVFLPMV 77 (80)
Q Consensus 45 knqygfftgkikvdaqfi--lsekmdiphvflpmv 77 (80)
.|+-|.-.=+|.+..-.- -+.-.|-|||||-|-
T Consensus 10 ~Nd~G~~~I~Ig~keFmCiGA~pP~DHPHvflDmG 44 (47)
T pfam10089 10 QNDAGVDIIEIGVKEFMCVGANPPFDHPHVFLDMG 44 (47)
T ss_pred ECCCCCEEEEECCEEEEECCCCCCCCCCEEEEECC
T ss_conf 36899415997437898857789999987816125
No 281
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=25.87 E-value=41 Score=16.68 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=12.6
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 74544502689999874
Q gi|254781089|r 2 GLSESGKTTLLEAIFLF 18 (80)
Q Consensus 2 glsesgkttlleaiflf 18 (80)
|-.-|||||++.|+.-+
T Consensus 169 GgTGSGKTTllnALl~~ 185 (343)
T PRK13851 169 GPTGSGKTTMSKTLISA 185 (343)
T ss_pred CCCCCCHHHHHHHHHHC
T ss_conf 88986199999999962
No 282
>PRK07560 elongation factor EF-2; Reviewed
Probab=25.71 E-value=38 Score=16.85 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=10.1
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 745445026899998743
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFG 19 (80)
Q Consensus 2 glsesgkttlleaiflfg 19 (80)
|-..+|||||.|++....
T Consensus 27 aHvdaGKTTLtE~lL~~s 44 (730)
T PRK07560 27 AHIDHGKTTLSDNLLAGA 44 (730)
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 379989899999999964
No 283
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=25.26 E-value=37 Score=16.90 Aligned_cols=15 Identities=53% Similarity=0.793 Sum_probs=12.0
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|.-.|||||++..+.
T Consensus 7 GFLGaGKTTll~~lL 21 (158)
T cd03112 7 GFLGAGKTTLLNHIL 21 (158)
T ss_pred ECCCCCHHHHHHHHH
T ss_conf 488899999999998
No 284
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.22 E-value=34 Score=17.11 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-||||||+..|.-
T Consensus 38 iG~NGaGKSTLl~~i~G 54 (285)
T PRK13636 38 LGGNGAGKSTLFQNLNG 54 (285)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99999809999999965
No 285
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=25.13 E-value=34 Score=17.12 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-+-+|||||+..|.=+
T Consensus 32 iGpNGaGKSTL~~~i~Gl 49 (230)
T TIGR03410 32 LGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999994099999999779
No 286
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=25.08 E-value=36 Score=16.96 Aligned_cols=17 Identities=41% Similarity=0.333 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|-|-|||||++.+|.-
T Consensus 39 vGeSGsGKSTl~~~ilg 55 (327)
T PRK11022 39 VGESGSGKSVSSLAIMG 55 (327)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99998789999999974
No 287
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=25.06 E-value=40 Score=16.75 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHH
Q ss_conf 74544502689999874343210123881246761022
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDV 39 (80)
Q Consensus 2 glsesgkttlleaiflfgealalalsndpvsvflksdv 39 (80)
|-+.||||||.+.+.- .++. .+-.+.+++..|+
T Consensus 7 G~~~sGKttl~~~L~~--~~~~---~g~~~~~~~~~d~ 39 (122)
T pfam03205 7 GPKDSGKTTLIRKLLN--YLKR---RGYRVAVVKHLDH 39 (122)
T ss_pred CCCCCCHHHHHHHHHH--HHHH---CCCCEEEEEECCC
T ss_conf 4899989999999999--9998---7994489998999
No 288
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=24.97 E-value=37 Score=16.91 Aligned_cols=17 Identities=41% Similarity=0.698 Sum_probs=11.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|.+-|||+||+.+|.-
T Consensus 295 ~G~nGsGKsTL~~~l~G 311 (510)
T PRK09700 295 AGLVGSGRTELMNCLFG 311 (510)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 76888628899999819
No 289
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=24.86 E-value=38 Score=16.87 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 974544502689999874343
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEA 21 (80)
Q Consensus 1 mglsesgkttlleaiflfgea 21 (80)
.|-|-+||+|||+.+-=|.+.
T Consensus 384 ~G~SGaGKSTLL~lLLGf~~P 404 (570)
T TIGR02857 384 VGPSGAGKSTLLNLLLGFVEP 404 (570)
T ss_pred EECCCCCHHHHHHHHHCCCCC
T ss_conf 627999788999999715764
No 290
>KOG0525 consensus
Probab=24.78 E-value=43 Score=16.54 Aligned_cols=40 Identities=33% Similarity=0.536 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHH-HCCC
Q ss_conf 544502689999874343210123881246761022-0231
Q gi|254781089|r 4 SESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDV-FDGI 43 (80)
Q Consensus 4 sesgkttlleaiflfgealalalsndpvsvflksdv-fdgi 43 (80)
+|+|.++-+.-.--..+||..||..||-+|..-.|| |.|.
T Consensus 33 ~e~ge~~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggv 73 (362)
T KOG0525 33 LEAGEKKKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGV 73 (362)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEE
T ss_conf 65555556029999999998775149832783245422407
No 291
>PRK13542 consensus
Probab=24.74 E-value=36 Score=16.94 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-+-+|||||+..|--+
T Consensus 50 iGpNGaGKTTLlk~l~Gl 67 (224)
T PRK13542 50 MGPNGSGKTSLLRVLSGL 67 (224)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999579
No 292
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=24.64 E-value=34 Score=17.08 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=13.0
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+|-..+||+||+.++
T Consensus 6 vG~~n~GKSTL~n~L 20 (164)
T cd04171 6 AGHIDHGKTTLIKAL 20 (164)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 926887299999998
No 293
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=24.58 E-value=35 Score=17.04 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-+||||++..|.=
T Consensus 53 lGpNGaGKSTllk~l~G 69 (236)
T cd03267 53 IGPNGAGKTTTLKILSG 69 (236)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99998309999999964
No 294
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=24.56 E-value=37 Score=16.92 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 974544502689999874343
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEA 21 (80)
Q Consensus 1 mglsesgkttlleaiflfgea 21 (80)
.|++.+|||+++..+ ..++-
T Consensus 5 lG~~~~GKTsil~r~-~~~~~ 24 (160)
T cd04156 5 LGLDSAGKSTLLYKL-KHAEL 24 (160)
T ss_pred ECCCCCCHHHHHHHH-HCCCC
T ss_conf 999999999999999-56987
No 295
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=24.52 E-value=38 Score=16.83 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-+|||||+..+.=
T Consensus 37 lG~NGAGKTTllk~l~G 53 (293)
T COG1131 37 LGPNGAGKTTLLKILAG 53 (293)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 89999989999999967
No 296
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=24.41 E-value=37 Score=16.91 Aligned_cols=17 Identities=47% Similarity=0.669 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-+-|||||++..|.-
T Consensus 31 iGpNGaGKSTllk~i~G 47 (213)
T cd03235 31 VGPNGAGKSTLLKAILG 47 (213)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 99999869999999976
No 297
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=24.32 E-value=27 Score=17.64 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=12.1
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 97454450268999
Q gi|254781089|r 1 MGLSESGKTTLLEA 14 (80)
Q Consensus 1 mglsesgkttllea 14 (80)
||-+..|||||..+
T Consensus 6 ~G~~gCGKTTL~q~ 19 (144)
T TIGR02528 6 IGSVGCGKTTLTQA 19 (144)
T ss_pred EECCCCCHHHHHHH
T ss_conf 71588874435431
No 298
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.06 E-value=35 Score=17.06 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-||||||+..|-
T Consensus 38 iG~nGsGKSTLl~~l~ 53 (288)
T PRK13643 38 IGHTGSGKSTLLQHLN 53 (288)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9999947999999997
No 299
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=23.70 E-value=39 Score=16.76 Aligned_cols=20 Identities=50% Similarity=0.630 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHHHHHHE
Q ss_conf 45026899998743432101
Q gi|254781089|r 6 SGKTTLLEAIFLFGEALALA 25 (80)
Q Consensus 6 sgkttlleaiflfgealala 25 (80)
.|-..|||+|.|..|.|-|-
T Consensus 490 ~~~~~l~e~i~l~ae~~~l~ 509 (839)
T PRK05306 490 EGIDELLEAILLQAEVLELK 509 (839)
T ss_pred CCHHHHHHHHHHHHHHHCCC
T ss_conf 87899999999876652044
No 300
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=23.69 E-value=41 Score=16.65 Aligned_cols=16 Identities=50% Similarity=0.642 Sum_probs=12.8
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
.|-|.+|||+|+.||-
T Consensus 425 ~G~SG~GKTsLlRaia 440 (604)
T COG4178 425 TGESGAGKTSLLRALA 440 (604)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 7899987889999996
No 301
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=23.51 E-value=44 Score=16.52 Aligned_cols=15 Identities=60% Similarity=0.756 Sum_probs=11.8
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-.-|||||++.|+.
T Consensus 156 G~TgsGKTTll~all 170 (320)
T PRK13894 156 GGTGSGKTTLVNAII 170 (320)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 588865689999998
No 302
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=23.41 E-value=43 Score=16.58 Aligned_cols=15 Identities=47% Similarity=0.514 Sum_probs=8.2
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|.|-|||+|+..+|.
T Consensus 357 G~sGsGKSTl~r~l~ 371 (623)
T PRK10261 357 GESGSGKSTTGRALL 371 (623)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 678766899999985
No 303
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.41 E-value=35 Score=17.02 Aligned_cols=11 Identities=55% Similarity=0.703 Sum_probs=9.3
Q ss_pred CCCCEEEEEEE
Q ss_conf 48740110001
Q gi|254781089|r 67 MDIPHVFLPMV 77 (80)
Q Consensus 67 mdiphvflpmv 77 (80)
.|-|||||+|-
T Consensus 34 ~~HPrV~L~mg 44 (62)
T COG4391 34 NDHPRVFLDMG 44 (62)
T ss_pred CCCCEEEEECC
T ss_conf 99988988727
No 304
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.15 E-value=42 Score=16.64 Aligned_cols=18 Identities=56% Similarity=0.656 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-+||||||.-+-=|
T Consensus 37 lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 37 LGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 768886578899998627
No 305
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=22.98 E-value=41 Score=16.69 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|.+-+||||++..|.=+
T Consensus 37 lG~NGaGKSTllk~i~Gl 54 (218)
T cd03266 37 LGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999998499999999779
No 306
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK; InterPro: IPR012700 Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this complex rather than part of a transporter per se ..
Probab=22.91 E-value=41 Score=16.65 Aligned_cols=17 Identities=53% Similarity=0.661 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|-|-|||+|||.++--
T Consensus 34 vGesGsGk~tll~~~~~ 50 (251)
T TIGR02323 34 VGESGSGKSTLLKALAA 50 (251)
T ss_pred EECCCCCHHHHHHHHHH
T ss_conf 61588747899999986
No 307
>pfam01893 UPF0058 Uncharacterized protein family UPF0058. This archaebacterial protein has no known function.
Probab=22.91 E-value=37 Score=16.90 Aligned_cols=25 Identities=44% Similarity=0.529 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHEECCCCE
Q ss_conf 5026899998743432101238812
Q gi|254781089|r 7 GKTTLLEAIFLFGEALALALSNDPV 31 (80)
Q Consensus 7 gkttlleaiflfgealalalsndpv 31 (80)
.|+---.|||+.|.++|-++|.+--
T Consensus 45 sK~eHk~AIF~L~~~Ia~~mse~e~ 69 (88)
T pfam01893 45 SKSEHKYAIFLLGNAIAEAMSEDED 69 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6899999999999999999876126
No 308
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=22.88 E-value=41 Score=16.66 Aligned_cols=15 Identities=60% Similarity=0.913 Sum_probs=12.8
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+|++.+|||+++...
T Consensus 5 lG~~~~GKTsll~~~ 19 (159)
T cd04159 5 VGLQNSGKTTLVNVI 19 (159)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 999998699999999
No 309
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=22.71 E-value=39 Score=16.81 Aligned_cols=15 Identities=60% Similarity=0.880 Sum_probs=12.8
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+|-...|||||++++
T Consensus 6 vG~~n~GKSTL~n~L 20 (168)
T cd01887 6 MGHVDHGKTTLLDKI 20 (168)
T ss_pred EECCCCCHHHHHHHH
T ss_conf 948998598999998
No 310
>PRK06547 hypothetical protein; Provisional
Probab=22.61 E-value=48 Score=16.31 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHCCC
Q ss_conf 745445026899998743432101238812467610220231
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGI 43 (80)
Q Consensus 2 glsesgkttlleaiflfgealalalsndpvsvflksdvfdgi 43 (80)
|-|-||||||-..+-- .+. .+.|+---|.|+|-
T Consensus 22 G~sGaGKTTLA~~La~-------~~~--~~~vvHmDD~Y~GW 54 (184)
T PRK06547 22 GRSGSGKTTLAGELAA-------CWE--GSQLVHLDDLYPGW 54 (184)
T ss_pred CCCCCCHHHHHHHHHH-------HCC--CCCEEEECCCCCCC
T ss_conf 8998888999999997-------457--98289705777776
No 311
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.57 E-value=39 Score=16.80 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-|-||||||+..|-
T Consensus 39 iG~nGsGKSTLl~~l~ 54 (280)
T PRK13649 39 IGHTGSGKSTIMQLLN 54 (280)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 9599986999999996
No 312
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.41 E-value=42 Score=16.60 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|..-+|||||+..|.=
T Consensus 32 lG~NGaGKTTll~~i~G 48 (210)
T cd03269 32 LGPNGAGKTTTIRMILG 48 (210)
T ss_pred ECCCCCCHHHHHHHHHC
T ss_conf 98999849999999960
No 313
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=22.39 E-value=45 Score=16.46 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-..+|||||.+++..-
T Consensus 5 iGHvD~GKSTL~g~lL~~ 22 (219)
T cd01883 5 IGHVDAGKSTTTGHLLYL 22 (219)
T ss_pred EECCCCCHHHHHHHHHHH
T ss_conf 966899899999999998
No 314
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP); InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria . Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding . With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels . PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another , . Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site . PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis.
Probab=22.35 E-value=27 Score=17.60 Aligned_cols=10 Identities=80% Similarity=1.076 Sum_probs=7.6
Q ss_pred CCCCCCHHHH
Q ss_conf 7454450268
Q gi|254781089|r 2 GLSESGKTTL 11 (80)
Q Consensus 2 glsesgkttl 11 (80)
|||-.|||||
T Consensus 250 GLSGTGKTTL 259 (549)
T TIGR00224 250 GLSGTGKTTL 259 (549)
T ss_pred CCCCCCCCCC
T ss_conf 6778884345
No 315
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=22.33 E-value=48 Score=16.31 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|-|-|||+||+..+.-+
T Consensus 53 vG~sGsGKSTL~~ll~gl 70 (257)
T cd03288 53 CGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred ECCCCCCHHHHHHHHHHC
T ss_conf 999998199999999605
No 316
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=22.13 E-value=47 Score=16.33 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
+|-..+|||||.+++.-
T Consensus 6 igHvdhGKTTL~D~Ll~ 22 (222)
T cd01885 6 IAHVDHGKTTLSDSLLA 22 (222)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 86688779999999999
No 317
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=22.05 E-value=52 Score=16.10 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
.|..-+|||||+..|.=+
T Consensus 32 lG~NGaGKSTLl~~i~Gl 49 (208)
T cd03268 32 LGPNGAGKTTTMKIILGL 49 (208)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999578
No 318
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=21.61 E-value=52 Score=16.12 Aligned_cols=15 Identities=53% Similarity=0.643 Sum_probs=13.1
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 745445026899998
Q gi|254781089|r 2 GLSESGKTTLLEAIF 16 (80)
Q Consensus 2 glsesgkttlleaif 16 (80)
|-+.||||.|+.|+-
T Consensus 45 G~~GsGKTHLl~a~~ 59 (226)
T TIGR03420 45 GESGSGKSHLLQAAC 59 (226)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 999998899999999
No 319
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=21.59 E-value=55 Score=15.99 Aligned_cols=17 Identities=47% Similarity=0.479 Sum_probs=13.9
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 74544502689999874
Q gi|254781089|r 2 GLSESGKTTLLEAIFLF 18 (80)
Q Consensus 2 glsesgkttlleaiflf 18 (80)
|-|-+||+||+.++..-
T Consensus 9 gPSGaGK~Tli~~l~~~ 25 (184)
T PRK10078 9 GPSGSGKDSLLAALRQR 25 (184)
T ss_pred CCCCCCHHHHHHHHHHC
T ss_conf 99869999999999844
No 320
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=21.50 E-value=57 Score=15.91 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 97454450268999987434
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGE 20 (80)
Q Consensus 1 mglsesgkttlleaiflfge 20 (80)
.|-|-|||+||+..+.-|-+
T Consensus 347 VG~SGsGKSTLl~LL~g~y~ 366 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred ECCCCCCHHHHHHHHHHHHH
T ss_conf 79999987999999997764
No 321
>pfam09818 ABC_ATPase Predicted ATPase of the ABC class. Members of this family include various bacterial predicted ABC class ATPases.
Probab=21.44 E-value=43 Score=16.55 Aligned_cols=13 Identities=54% Similarity=0.554 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 4450268999987
Q gi|254781089|r 5 ESGKTTLLEAIFL 17 (80)
Q Consensus 5 esgkttlleaifl 17 (80)
-.||+|||+||-.
T Consensus 253 yHGKSTLL~Ale~ 265 (447)
T pfam09818 253 YHGKSTLLEALER 265 (447)
T ss_pred CCCHHHHHHHHHH
T ss_conf 7767889999982
No 322
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=21.40 E-value=42 Score=16.64 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 974544502689999874
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLF 18 (80)
Q Consensus 1 mglsesgkttlleaiflf 18 (80)
+|-|-|||+|++.++.-.
T Consensus 35 iG~SGsGKStl~k~llgl 52 (254)
T PRK10418 35 VGGSGSGKSLTCAAALGI 52 (254)
T ss_pred ECCCCCHHHHHHHHHHCC
T ss_conf 999987899999999579
No 323
>pfam09853 DUF2080 Putative transposon-encoded protein (DUF2080). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=21.34 E-value=58 Score=15.88 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=20.6
Q ss_pred CCCCEEEEEEEEEEEEEEEECCCCCCCEEE
Q ss_conf 134302576678751112320014874011
Q gi|254781089|r 44 SKNQYGFFTGKIKVDAQFILSEKMDIPHVF 73 (80)
Q Consensus 44 sknqygfftgkikvdaqfilsekmdiphvf 73 (80)
++|-|++|-|++|-- =-|.++|+|.-+
T Consensus 11 ~r~~~p~f~g~vk~~---GnSa~vd~Pkey 37 (51)
T pfam09853 11 PRNILPSFKGVVKAH---GNSATVDLPKEY 37 (51)
T ss_pred HHHHCCEEEEEEEEC---CCCEEEECCHHH
T ss_conf 033040478999733---752356199799
No 324
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=21.28 E-value=61 Score=15.74 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 97454450268999987434
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGE 20 (80)
Q Consensus 1 mglsesgkttlleaiflfge 20 (80)
.|-|-|||+||+..+.-|=+
T Consensus 374 VG~SGsGKSTL~~LL~gly~ 393 (581)
T PRK11176 374 VGRSGSGKSTIANLLTRFYD 393 (581)
T ss_pred CCCCCCCHHHHHHHHHHHCC
T ss_conf 28999867899999985366
No 325
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=21.19 E-value=52 Score=16.11 Aligned_cols=42 Identities=36% Similarity=0.509 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHHHHHHH------------HHHHEECCCCEEE-EEEHHHHCC
Q ss_conf 97454450268999987434------------3210123881246-761022023
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGE------------ALALALSNDPVSV-FLKSDVFDG 42 (80)
Q Consensus 1 mglsesgkttlleaiflfge------------alalalsndpvsv-flksdvfdg 42 (80)
||-|-+||.|||.-|-=|-. -.+.+-+..|||. |-....|.-
T Consensus 31 ~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaH 85 (231)
T COG3840 31 LGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAH 85 (231)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCHHHHHHCCCCCHH
T ss_conf 7788865788999987424778745898572147689544873111100564211
No 326
>KOG1145 consensus
Probab=21.10 E-value=43 Score=16.56 Aligned_cols=15 Identities=60% Similarity=0.915 Sum_probs=10.7
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
||--..||||||.++
T Consensus 159 MGHVDHGKTTLLD~l 173 (683)
T KOG1145 159 MGHVDHGKTTLLDAL 173 (683)
T ss_pred EECCCCCHHHHHHHH
T ss_conf 601357700199887
No 327
>PRK07261 topology modulation protein; Provisional
Probab=20.69 E-value=50 Score=16.19 Aligned_cols=15 Identities=47% Similarity=0.671 Sum_probs=12.3
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 974544502689999
Q gi|254781089|r 1 MGLSESGKTTLLEAI 15 (80)
Q Consensus 1 mglsesgkttlleai 15 (80)
+|-|-|||+||-..+
T Consensus 6 iG~sGsGKSTlAr~L 20 (171)
T PRK07261 6 IGYSGSGKSTLARFL 20 (171)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 889998689999999
No 328
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=20.60 E-value=54 Score=16.04 Aligned_cols=16 Identities=56% Similarity=0.627 Sum_probs=12.1
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7454450268999987
Q gi|254781089|r 2 GLSESGKTTLLEAIFL 17 (80)
Q Consensus 2 glsesgkttlleaifl 17 (80)
|-..|||||+|+||-.
T Consensus 31 gpNGsGKTtvLdair~ 46 (440)
T COG3950 31 GPNGSGKTTVLDAIRN 46 (440)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 7899870159999999
No 329
>pfam03983 SHD1 SLA1 homology domain 1, SHD1. NPFXD peptides specifically interact with the SHD1 domain. NPFXD is a clathrin-facilitated endocytic targeting signal. NPFXD was originally discovered in the cytoplasmic domain of the furin-like protease Kex2p. Sla1 is thought to function as an endocytic adaptor.
Probab=20.40 E-value=45 Score=16.45 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=11.3
Q ss_pred EEEEEEEEEEEEEC
Q ss_conf 76678751112320
Q gi|254781089|r 51 FTGKIKVDAQFILS 64 (80)
Q Consensus 51 ftgkikvdaqfils 64 (80)
-||+.+|+||||--
T Consensus 18 rtG~F~VEA~flg~ 31 (70)
T pfam03983 18 RSGTFKVEAEFLGL 31 (70)
T ss_pred CCCCEEEEEEEEEE
T ss_conf 79973899999987
No 330
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.34 E-value=47 Score=16.35 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97454450268999987
Q gi|254781089|r 1 MGLSESGKTTLLEAIFL 17 (80)
Q Consensus 1 mglsesgkttlleaifl 17 (80)
.|-+-+|||||+..|--
T Consensus 31 lGpNGAGKSTll~~i~G 47 (211)
T cd03264 31 LGPNGAGKTTLMRILAT 47 (211)
T ss_pred ECCCCCHHHHHHHHHHC
T ss_conf 99998239999999975
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=20.33 E-value=49 Score=16.25 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=7.3
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 74544502689999
Q gi|254781089|r 2 GLSESGKTTLLEAI 15 (80)
Q Consensus 2 glsesgkttlleai 15 (80)
|-+-||||||+..|
T Consensus 36 G~NGsGKSTLl~iL 49 (632)
T PRK11147 36 GRNGAGKSTLMKIL 49 (632)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 99998799999998
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=20.23 E-value=53 Score=16.09 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9745445026899998
Q gi|254781089|r 1 MGLSESGKTTLLEAIF 16 (80)
Q Consensus 1 mglsesgkttlleaif 16 (80)
+|-+-+|||||+..|-
T Consensus 31 lGpNGaGKSTllk~i~ 46 (177)
T cd03222 31 VGPNGTGKTTAVKILA 46 (177)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 8999999999999996
No 333
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.12 E-value=64 Score=15.62 Aligned_cols=19 Identities=53% Similarity=0.611 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 7454450268999987434
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGE 20 (80)
Q Consensus 2 glsesgkttlleaiflfge 20 (80)
|-.-|||||+|.|+..|=-
T Consensus 150 G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 150 GGTASGKTTLLNALLDFIP 168 (312)
T ss_pred CCCCCCHHHHHHHHHHHCC
T ss_conf 8888864959999986378
No 334
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=20.11 E-value=62 Score=15.73 Aligned_cols=27 Identities=37% Similarity=0.759 Sum_probs=18.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEECCCC
Q ss_conf 974544502689999874343210123881
Q gi|254781089|r 1 MGLSESGKTTLLEAIFLFGEALALALSNDP 30 (80)
Q Consensus 1 mglsesgkttlleaiflfgealalalsndp 30 (80)
+|.+.+||+||+.++. |+..+. .|+.|
T Consensus 2 vG~~N~GKStL~N~L~--~~~~~~-vs~~~ 28 (163)
T cd00880 2 FGRTNAGKSSLLNALL--GQEVAI-VSPVP 28 (163)
T ss_pred CCCCCCCHHHHHHHHH--CCCCCE-ECCCC
T ss_conf 1979989999999995--899610-16989
No 335
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=20.10 E-value=38 Score=16.81 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 74544502689999874343210123881246761022023113430257667875
Q gi|254781089|r 2 GLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKV 57 (80)
Q Consensus 2 glsesgkttlleaiflfgealalalsndpvsvflksdvfdgisknqygfftgkikv 57 (80)
|||-+|||||---- -..-...|- .-. + .||+..-.+|+|.--|..
T Consensus 224 GlSGTGKTTLS~d~------~r~LIGDDe-hgw--~--~~GvfN~EgGcyak~~~l 268 (515)
T cd01919 224 GLSGTGKTTLSMDP------KRELIGDDE-HWW--K--DDGVFNPEGGCYAKAIGL 268 (515)
T ss_pred ECCCCCHHHHHHCC------CCEEECCCE-EEE--E--CCCEECCCCEEEEEECCC
T ss_conf 06666743387687------855874625-578--4--385563365068873488
Done!