RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781089|ref|YP_003065502.1| hypothetical protein
CLIBASIA_04955 [Candidatus Liberibacter asiaticus str. psy62]
(80 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 32.2 bits (73), Expect = 0.031
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 17/67 (25%)
Query: 20 EALALALSNDPVSVFLKSDVFDGISKNQYGFFTG--KIKVDA---Q----FILSE-KMDI 69
+ + ++L N ++ V G ++ YG K K + Q F SE K+
Sbjct: 364 KQVEISLVNGAKNL-----VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF--SERKLKF 416
Query: 70 PHVFLPM 76
+ FLP+
Sbjct: 417 SNRFLPV 423
Score = 26.8 bits (59), Expect = 1.3
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 3 LSESGKTTLLEAIFLFGEAL-ALALSNDPVSVFLKSDVFDGISKNQ---YGFFTGKIKVD 58
L + TTL++ L + A ++ P S +F + + F G+ D
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 59 AQFILSEKMDIPHVFLPMV 77
F E D+ + +V
Sbjct: 168 DYF--EELRDLYQTYHVLV 184
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 29.7 bits (65), Expect = 0.15
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SGKTTLLEAIFLFG 19
+GKT LLEA +L
Sbjct: 37 AGKTNLLEAAYLAL 50
>2f4p_A Hypothetical protein TM1010; structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative, PSI; HET: UNL; 1.90A {Thermotoga maritima
MSB8} SCOP: b.82.1.9
Length = 147
Score = 29.2 bits (65), Expect = 0.25
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 37 SDVFDGISKNQYGFFTGKIKVDAQFILSEKMDIPHVFLPMVHFP 80
D+F+ SK FFTG + V +++++ + + + V F
Sbjct: 15 DDIFERGSKGSSDFFTGNVWVKM--LVTDENGVFNTQVYDVVFE 56
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 28.6 bits (62), Expect = 0.33
Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 2 GLSESGKTTLLEAI-FLFGE 20
G + SGK+ +++AI ++FGE
Sbjct: 31 GPNGSGKSNIIDAIKWVFGE 50
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 27.8 bits (60), Expect = 0.66
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 1 MGLSESGKTTLLEAI 15
+G S+SGKTTL+ +
Sbjct: 8 VGTSDSGKTTLITRM 22
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
ketoacid dehydrogenase, branched-chain, multi- enzyme
complex, acylation; HET: TDP; 1.39A {Homo sapiens}
SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B*
1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B*
1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B*
2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 27.6 bits (60), Expect = 0.73
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 4 SESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDG 42
++ K L +++ AL +L+ DP +V DV G
Sbjct: 16 GQTQKMNLFQSV---TSALDNSLAKDPTAVIFGEDVAFG 51
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural genomics, PSI, protein structure initiative,
MCSG; 2.10A {Geobacillus stearothermophilus} SCOP:
c.37.1.10
Length = 169
Score = 27.2 bits (59), Expect = 0.95
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G SGKTTL+E
Sbjct: 10 VGYKHSGKTTLMEKW 24
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A
Length = 529
Score = 27.2 bits (59), Expect = 0.99
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALA 25
+ ++GKTT+ E + LFG+A+ A
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTA 43
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 26.8 bits (58), Expect = 1.1
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 11/51 (21%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFF 51
G K+T+ L+ L +K F+ F
Sbjct: 7 EGPDCCFKSTV-------AAKLSKELKYP----IIKGSSFELAKSGNEKLF 46
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta;
pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B*
3exf_B* 3exg_B 3exh_B* 3exi_B
Length = 341
Score = 26.8 bits (58), Expect = 1.2
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 8 KTTLLEAIFLFGEALALALSNDPVSVFLKSDV--FDGISKNQYGFF 51
+ T+ +AI + + L D L +V +DG K G +
Sbjct: 14 QVTVRDAI---NQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLW 56
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, non-SMC subunit, ABC-type
ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi}
PDB: 3euk_A*
Length = 483
Score = 26.8 bits (58), Expect = 1.2
Identities = 4/20 (20%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 2 GLSESGKTTLLEAI-FLFGE 20
G + +GK+T +
Sbjct: 36 GGNGAGKSTTMAGFVTALIP 55
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.40A {Bacillus halodurans c-125}
SCOP: c.37.1.25
Length = 189
Score = 26.5 bits (57), Expect = 1.3
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQ 60
G + GK+T + LA L S +++ D+ + + Y ++ A
Sbjct: 8 TGPAGVGKSTT-------CKRLAAQL---DNSAYIEGDIINHMVVGGYRPPWESDELLAL 57
Query: 61 FI 62
Sbjct: 58 TW 59
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 26.2 bits (56), Expect = 1.7
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 2 GLSESGKTTLLEAI-FLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQ 60
G + +GK+T + A L L + S D + +D
Sbjct: 34 GGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTI 93
Query: 61 FILSEKMDI 69
+++ +
Sbjct: 94 NSRHQRVVV 102
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase
1; transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 26.0 bits (57), Expect = 2.0
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 2 GLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDG 42
GLS +GKTT+ AL L + DG
Sbjct: 59 GLSGAGKTTV-------SMALEEYLV----CHGIPCYTLDG 88
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 26.0 bits (57), Expect = 2.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G S GKTTLL +
Sbjct: 36 IGASGCGKTTLLRCL 50
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleotide
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 26.2 bits (56), Expect = 2.1
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 9/73 (12%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQ 60
G S +GK+ + L + D + G I+ DA
Sbjct: 9 NGGSSAGKSGI---------VRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDAD 59
Query: 61 FILSEKMDIPHVF 73
+S + +
Sbjct: 60 GGVSIGPEFRALE 72
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 26.1 bits (57), Expect = 2.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
GL+ +GKTTLL +
Sbjct: 53 YGLNGAGKTTLLNIL 67
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 26.0 bits (57), Expect = 2.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+GL +GKTT+L +
Sbjct: 171 VGLDAAGKTTILYKL 185
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 25.8 bits (55), Expect = 2.2
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSV 33
G SGK+T+ EALA V
Sbjct: 15 SGHPGSGKSTI-------AEALANLPGVPKVHF 40
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP:
c.37.1.12
Length = 240
Score = 25.8 bits (56), Expect = 2.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G + +GK+ LE I
Sbjct: 30 LGPTGAGKSVFLELI 44
>2it1_A 362AA long hypothetical maltose/maltodextrin transport
ATP-binding protein; structural genomics, NPPSFA; 1.94A
{Pyrococcus horikoshii}
Length = 362
Score = 26.0 bits (57), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G S SGK+TLL I
Sbjct: 35 LGPSGSGKSTLLYTI 49
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 26.0 bits (56), Expect = 2.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G SGKT+LL +
Sbjct: 18 AGPQNSGKTSLLTLL 32
>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding
cassette, transport protein; HET: ADP; 2.30A
{Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB:
1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
Length = 381
Score = 26.0 bits (57), Expect = 2.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G S GK+TLL I
Sbjct: 35 VGPSGCGKSTLLRMI 49
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 25.7 bits (55), Expect = 2.4
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 1 MGLSESGKTTLLEAIF 16
+G + GK+TL++ +F
Sbjct: 48 VGETGLGKSTLMDTLF 63
>2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase
maturation factor, metal binding protein; 2.30A
{Archaeoglobus fulgidus}
Length = 221
Score = 25.7 bits (55), Expect = 2.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
MG SGKT L+E
Sbjct: 36 MGAIGSGKTLLIERT 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi}
Length = 607
Score = 25.8 bits (56), Expect = 2.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 1 MGLSESGKTTLLEAIF 16
+G + GKTT ++ +
Sbjct: 388 VGPNGIGKTTFVKMLA 403
Score = 24.6 bits (53), Expect = 5.4
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G + +GKTT ++ +
Sbjct: 123 VGPNGTGKTTAVKIL 137
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 2.10A {Aeropyrum
pernix K1}
Length = 186
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQ 60
GL SGKTT+ LA L + + +V DG + +
Sbjct: 19 TGLPGSGKTTI-------ATRLADLLQKE----GYRVEVLDGDWARTTVSEGAGFTREER 67
Query: 61 FILSEKMDIPHVFLP 75
+++ L
Sbjct: 68 LRHLKRIAWIARLLA 82
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, ABC ATPase, dimer, kleisin, mitosis, cell
cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 25.5 bits (54), Expect = 2.7
Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 6 SGKTTLLEAI-FLFGE 20
SGK+ +++AI F+ G
Sbjct: 37 SGKSNMMDAISFVLGV 52
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 25.5 bits (56), Expect = 2.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G S SGKTT+L I
Sbjct: 47 LGPSGSGKTTILRLI 61
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 25.5 bits (56), Expect = 2.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G S +GKTT + I
Sbjct: 37 LGPSGAGKTTFMRII 51
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 25.7 bits (55), Expect = 2.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+GL +SGKT L +
Sbjct: 13 VGLCDSGKTLLFVRL 27
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 25.4 bits (54), Expect = 2.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+GL SGKTT++ +
Sbjct: 27 LGLDNSGKTTIINKL 41
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7
c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 25.5 bits (55), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 8 KTTLLEAIFLFGEALALALSNDPVSVFLKSDV 39
+ T+++AI +AL + L NDP + DV
Sbjct: 2 QMTMVQAI---TDALRIELKNDPNVLIFGEDV 30
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 25.7 bits (56), Expect = 3.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 2 GLSESGKTTLLEAI 15
S +GKTTLL+ +
Sbjct: 13 AWSGTGKTTLLKKL 26
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 25.5 bits (55), Expect = 3.1
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+ + GK+TL +++
Sbjct: 25 IAHVDHGKSTLTDSL 39
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP,
hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP:
c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A*
2oxr_A*
Length = 262
Score = 25.3 bits (54), Expect = 3.2
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 1 MGLSESGKTTLLEAI--FLFGEALALALSNDPVSVFLKSDV 39
+G + SGKTTL +L ++ D L +
Sbjct: 20 VGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEP 60
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 25.3 bits (54), Expect = 3.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 7/26 (26%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALAL 26
MG+S SGK+ + +A L
Sbjct: 14 MGVSGSGKSAV-------ASEVAHQL 32
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 25.5 bits (55), Expect = 3.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 1 MGLSESGKTTLLEAIF 16
MGL SGK+++ + +F
Sbjct: 26 MGLRRSGKSSIQKVVF 41
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 25.3 bits (54), Expect = 3.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G GKTTL++ I
Sbjct: 6 TGEPGVGKTTLVKKI 20
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 25.2 bits (55), Expect = 3.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G S SGK+T L I
Sbjct: 38 IGSSGSGKSTFLRCI 52
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 25.1 bits (55), Expect = 3.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G + +GKTT L AI
Sbjct: 38 IGANGAGKTTTLSAI 52
>2qn6_A Translation initiation factor 2 gamma subunit; initiation of
translation, GTP-binding, nucleotide-binding, protein
biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus
P2} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2aho_A
2qmu_A* 2plf_A* 2pmd_A* 3cw2_A
Length = 414
Score = 25.4 bits (54), Expect = 3.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 6 SGKTTLLEAI 15
GKTTL++AI
Sbjct: 19 HGKTTLVQAI 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 25.2 bits (55), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G S SGK+TL + I F
Sbjct: 41 VGRSGSGKSTLTKLIQRF 58
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 25.2 bits (55), Expect = 3.6
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G + SGK+T+ +
Sbjct: 51 VGPNGSGKSTVAALLQNL 68
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 25.3 bits (55), Expect = 3.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G + SGK+TL+ I
Sbjct: 39 IGPNGSGKSTLINVI 53
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport,
alpha and beta proteins (A/B) class, TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Length = 359
Score = 25.3 bits (55), Expect = 3.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G S GKTT L +
Sbjct: 35 LGPSGCGKTTTLLML 49
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 25.2 bits (55), Expect = 3.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G GK++LL A+
Sbjct: 37 VGQVGCGKSSLLSALLAE 54
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 25.2 bits (54), Expect = 3.8
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 1 MGLSESGKTTLLEAIF 16
+G SGK+T
Sbjct: 8 IGCPGSGKSTWAREFI 23
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in
complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo
sapiens} PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 25.1 bits (53), Expect = 3.9
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFL 35
GLS +GKTT+ AL L + +
Sbjct: 11 TGLSGAGKTTV-------SMALEEYLVCHGIPCYT 38
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 25.2 bits (55), Expect = 4.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G S GKTT L I
Sbjct: 43 LGPSGCGKTTTLRMI 57
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter,
methionine uptake transporter, membrane protein,
amino-acid transport; 3.70A {Escherichia coli K12}
SCOP: c.37.1.12 d.58.18.13
Length = 343
Score = 25.2 bits (55), Expect = 4.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G S +GK+TL+ +
Sbjct: 37 IGASGAGKSTLIRCV 51
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC
transporters, ATPase, walker-A, NBD, transport protein;
HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP:
c.37.1.12 PDB: 1f3o_A*
Length = 235
Score = 25.2 bits (55), Expect = 4.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
MG S SGK+T+L I
Sbjct: 37 MGPSGSGKSTMLNII 51
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 24.8 bits (54), Expect = 4.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G S GKTT L I
Sbjct: 35 LGPSGCGKTTTLRMI 49
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 24.9 bits (53), Expect = 4.3
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 1 MGLSESGKTTLLEAIFLFGEALALALSNDPVSVFLKS 37
+G S GK+TL+ + LF L P K+
Sbjct: 37 VGESGLGKSTLINS--LFLTDLYSPEYPGPSHRIKKT 71
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 24.9 bits (53), Expect = 4.3
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G +SG+T+L +
Sbjct: 27 IGTEKSGRTSLAANL 41
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 24.8 bits (54), Expect = 4.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 1 MGLSESGKTTLLEAIFLF 18
G S GK+T+ + F
Sbjct: 34 AGPSGGGKSTIFSLLERF 51
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 25.0 bits (55), Expect = 4.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G S +GK+T+L +F F
Sbjct: 86 VGPSGAGKSTILRLLFRF 103
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 24.9 bits (54), Expect = 4.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 6 SGKTTLLEAIFLFG 19
+GKTT E I +
Sbjct: 21 AGKTTTTERILYYT 34
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 25.0 bits (53), Expect = 4.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+GL SGKTT + I
Sbjct: 28 VGLQYSGKTTFVNVI 42
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 24.7 bits (53), Expect = 4.5
Identities = 4/10 (40%), Positives = 8/10 (80%)
Query: 6 SGKTTLLEAI 15
+GK+TL+ +
Sbjct: 44 AGKSTLMGRL 53
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C*
Length = 249
Score = 24.9 bits (54), Expect = 4.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G + +GK+TLL +
Sbjct: 32 VGPNGAGKSTLLARM 46
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A
Length = 260
Score = 24.7 bits (53), Expect = 4.7
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 1 MGLSESGKTTLLEAI 15
GL GK+T + +
Sbjct: 10 TGLPGVGKSTFSKNL 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 24.9 bits (54), Expect = 4.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G + GK+TLL+ +
Sbjct: 37 LGQNGCGKSTLLDLL 51
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 24.8 bits (54), Expect = 4.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G + +GKT LE I
Sbjct: 32 LGPTGAGKTLFLELI 46
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 24.7 bits (53), Expect = 5.0
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 1 MGLSESGKTTLLEAIF 16
+G SGK+T
Sbjct: 8 IGCPGSGKSTWAREFI 23
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum 3D7}
Length = 228
Score = 24.7 bits (52), Expect = 5.0
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 1 MGLSESGKTTLLEAI 15
G GK++ + +
Sbjct: 35 SGAPNVGKSSFMNIV 49
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A
1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Length = 290
Score = 24.9 bits (54), Expect = 5.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MGLSESGKTTLLEAIFLF 18
G + +GKT+LL I
Sbjct: 70 AGSTGAGKTSLLMMIMGE 87
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate
metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP;
1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB:
1d6j_A* 1m7h_A* 3cr7_A*
Length = 211
Score = 24.7 bits (53), Expect = 5.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 2 GLSESGKTTLLEAIF 16
GLS SGK+TL +
Sbjct: 32 GLSASGKSTLAVELE 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 24.6 bits (53), Expect = 5.1
Identities = 4/15 (26%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+G + +GK+T ++ +
Sbjct: 53 VGPNGTGKSTAVKIL 67
Score = 23.9 bits (51), Expect = 7.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G + GKTT ++ +
Sbjct: 318 VGPNGIGKTTFVKML 332
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 24.8 bits (54), Expect = 5.3
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G + SGK+T+ + ++ F
Sbjct: 52 VGHTGSGKSTIAKLLYRF 69
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 24.5 bits (52), Expect = 5.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+GL +GKTT+L
Sbjct: 27 VGLDNAGKTTILYQF 41
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit;
GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus
jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 24.5 bits (52), Expect = 6.0
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 6 SGKTTLLEAI 15
GKT+L +A+
Sbjct: 19 HGKTSLTKAL 28
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 24.3 bits (53), Expect = 6.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1 MGLSESGKTTLLEAIFLF 18
+G + SGK+TLL A
Sbjct: 53 LGRTGSGKSTLLSAFLRL 70
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 24.4 bits (52), Expect = 6.0
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 8 KTTLLEAIFLFGEALALALSNDPVSVFLKSDV--FDGISKNQYGFF 51
T+++A+ AL ++ DP V L DV G+ G
Sbjct: 3 LMTMVQAL---NRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLL 45
>1sgw_A Putative ABC transporter; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Pyrococcus furiosus dsm
3638} SCOP: c.37.1.12
Length = 214
Score = 24.5 bits (53), Expect = 6.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
G + GKTTLL+ I
Sbjct: 41 HGPNGIGKTTLLKTI 55
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural
genomics, joint center for structural genomics, JCSG;
2.10A {Thermotoga maritima MSB8} SCOP: c.37.1.12
Length = 256
Score = 24.5 bits (53), Expect = 6.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
+G + +GKTT L I
Sbjct: 47 IGPNGAGKTTTLRII 61
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
cell membrane, cobalt transport, hydrolase, ION
transport; 2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 24.4 bits (53), Expect = 6.5
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
+G + GK+TL +
Sbjct: 40 LGGNGVGKSTLFQNF 54
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt
transport, hydrolase, inner membrane, membrane,
nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
Length = 266
Score = 24.4 bits (53), Expect = 6.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
G + SGK+TLL+ +
Sbjct: 39 AGNTGSGKSTLLQIV 53
>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 24.4 bits (53), Expect = 7.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MGLSESGKTTLLEAIFLF 18
G + +GKT+LL I
Sbjct: 40 AGSTGAGKTSLLMMIMGE 57
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 24.0 bits (52), Expect = 7.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 1 MGLSESGKTTLLEAI 15
+G + SGKTTLL AI
Sbjct: 36 LGPNGSGKTTLLRAI 50
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
GH35, glycoprotein; HET: NAG BMA MAN; 1.90A {Penicillium
SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5
c.1.8.14 PDB: 1xc6_A*
Length = 971
Score = 24.1 bits (52), Expect = 7.6
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 17 LFGEALALALSNDPVSVFLKSDVFDGISKNQYGFFTGKIKVDAQFILSEKMDIP 70
L+ E P + S F G++K F++ +D L DIP
Sbjct: 821 LYAERQGFHQPQPPTQKWDSSSPFTGLTKPGIRFYSTSFDLD----LPSGYDIP 870
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli}
Length = 704
Score = 24.2 bits (52), Expect = 7.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 1 MGLSESGKTTLLEAIFLFG 19
++GKTT E I +
Sbjct: 16 SAHIDAGKTTTTERILFYT 34
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 24.3 bits (52), Expect = 7.9
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1 MGLSESGKTTLLEAI 15
+GL +GKT++L +
Sbjct: 28 LGLDNAGKTSILYRL 42
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 24.1 bits (52), Expect = 8.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MGLSESGKTTLLEAI 15
MG + SGK+TL +
Sbjct: 52 MGPNGSGKSTLSATL 66
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus HB8}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A
1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2j7k_A* 2efg_A* 1jqm_B
1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 1zn0_B
1jqs_C 2bcw_C 1jqs_B
Length = 691
Score = 23.9 bits (51), Expect = 8.5
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 1 MGLSESGKTTLLEAIFLFGEAL 22
++GKTT E I + +
Sbjct: 18 AAHIDAGKTTTTERILYYTGRI 39
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.70A {Thermus thermophilus HB8}
PDB: 2d2f_A*
Length = 250
Score = 23.7 bits (51), Expect = 8.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1 MGLSESGKTTLLEAIFLF 18
MG + +GK+TL + +
Sbjct: 35 MGPNGAGKSTLGKILAGD 52
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae
PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 24.0 bits (51), Expect = 8.9
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 6 SGKTTLLEAI 15
GK+TL+ +
Sbjct: 35 DGKSTLIGRL 44
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 24.0 bits (51), Expect = 9.1
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 6 SGKTTLLEAI 15
SGK+T+L I
Sbjct: 188 SGKSTMLGRI 197
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein
LOLD; structural genomics, NPPSFA; 1.70A {Aquifex
aeolicus VF5} PDB: 2pcl_A
Length = 224
Score = 23.9 bits (51), Expect = 9.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 1 MGLSESGKTTLL 12
+G S SGK+TLL
Sbjct: 36 IGASGSGKSTLL 47
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 23.6 bits (50), Expect = 9.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MGLSESGKTTLLEAI 15
G + GKTTL + +
Sbjct: 25 FGHIDHGKTTLSKVL 39
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome
condensation, condensin, non-SMC subunit, kleisin,
calcium, cell cycle, cell division; 2.90A {Escherichia
coli}
Length = 440
Score = 23.6 bits (51), Expect = 9.6
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 30 PVSVFLKSDVFDGISKNQYGFFTGKIKVDAQFILSEKMDI 69
SV +++FD I Q +D Q K DI
Sbjct: 161 KYSV---AEIFDSIDLTQRL-------MDEQQ-QQVKDDI 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A*
Length = 341
Score = 23.7 bits (50), Expect = 9.9
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 6 SGKTTLLEAIF 16
+GK+++LE
Sbjct: 37 AGKSSVLENFV 47
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.142 0.407
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 658,668
Number of extensions: 24477
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 117
Length of query: 80
Length of database: 5,693,230
Length adjustment: 49
Effective length of query: 31
Effective length of database: 4,505,274
Effective search space: 139663494
Effective search space used: 139663494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.6 bits)