Query gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 71 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:21:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781090.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ycd_A Hypothetical 27.3 kDa 40.4 31 0.00092 17.5 3.4 28 27-54 14-56 (58) 2 >1j2z_A Acyl-[acyl-carrier-pro 18.5 89 0.0026 15.0 3.1 33 22-54 15-47 (67) 3 >3hsq_A Acyl-[acyl-carrier-pro 16.4 1E+02 0.003 14.7 3.0 33 22-54 16-48 (57) 4 >1rbl_M Ribulose 1,5 bisphosph 16.1 38 0.0011 17.0 0.2 54 7-62 33-88 (109) 5 >2ql3_A Probable transcription 13.1 47 0.0014 16.5 -0.1 25 45-69 21-45 (110) 6 >3hot_A Transposable element m 12.2 91 0.0027 14.9 1.2 46 18-63 15-61 (65) 7 >1yvl_A Signal transducer and 12.0 46 0.0014 16.6 -0.4 16 42-57 59-74 (104) 8 >2dl6_A Chromodomain-helicase- 11.2 62 0.0018 15.8 0.1 26 38-63 32-57 (83) 9 >2aqx_A Predicted: inositol 1, 10.0 1.5E+02 0.0043 13.8 1.6 20 24-43 12-31 (55) 10 >3c68_A Uncharacterized protei 9.9 1.4E+02 0.0042 13.9 1.5 14 27-40 23-36 (42) No 1 >>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} (A:44-101) Probab=40.39 E-value=31 Score=17.50 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=22.0 Q ss_pred CCHHHHHHHHHHC---------------CHHHHHHHHHHHHHH Q ss_conf 4378899898620---------------116679999999631 Q gi|254781090|r 27 TSKDKYQKIVKIG---------------DHAESIKTLADFIKD 54 (71) Q Consensus 27 tskdkyqkivkig---------------dhaesiktladfikd 54 (71) -++.|.|.+|.-| +-+|+++++.|.||+ T Consensus 14 ~~dekW~~tvda~~Nr~Wf~H~d~s~~lgl~eai~yv~dhIk~ 56 (58) T 1ycd_A 14 MDDEKWQATLDADVNRAWFYHSEISHELDISEGLKSVVDHIKA 56 (58) T ss_dssp CCHHHHHHHHHTTCCEESSCCCSSGGGCCCHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 5776664334777541110366531065499999999998501 No 2 >>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA; HET: SOG TLA; 2.10A {Helicobacter pylori} (A:204-270) Probab=18.46 E-value=89 Score=14.99 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=26.8 Q ss_pred HHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 233864378899898620116679999999631 Q gi|254781090|r 22 YRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD 54 (71) Q Consensus 22 yrsgktskdkyqkivkigdhaesiktladfikd 54 (71) ||+|.+-.+--+.+-..-....-+..+.+||.. T Consensus 15 fr~gl~~~eal~~i~~~~~~~pev~~~~~Fi~~ 47 (67) T 1j2z_A 15 FRPIPSLRESAKLELEEHANNPFVKEICSFILE 47 (67) T ss_dssp TCSSSCHHHHHHHHHHHTSSCHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 856876999999998773799899999999971 No 3 >>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* (A:203-259) Probab=16.44 E-value=1e+02 Score=14.71 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=25.9 Q ss_pred HHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 233864378899898620116679999999631 Q gi|254781090|r 22 YRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD 54 (71) Q Consensus 22 yrsgktskdkyqkivkigdhaesiktladfikd 54 (71) ||+|.+-.+--..+-.--.....++.+.+||+. T Consensus 16 y~~gl~~~eal~~l~~~~~~~pev~~~i~Fi~~ 48 (57) T 3hsq_A 16 YHSGISTRKALDELEASGNLIEQVKYIIKFFRD 48 (57) T ss_dssp HSSSSCHHHHHHHHHTTCCCCHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHC T ss_conf 707998999999998514688999999999972 No 4 >>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase (small chain); lyase(carbon-carbon); HET: CAP; 2.20A {Synechococcus elongatus pcc 6301} (M:) Probab=16.10 E-value=38 Score=17.01 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=35.9 Q ss_pred HHHCCCCEEEEEEEHHHCCCCCHHHHHH--HHHHCCHHHHHHHHHHHHHHCCCCCEEH Q ss_conf 1113460121123112338643788998--9862011667999999963188874007 Q gi|254781090|r 7 LLNGWGVNFRFLLDGYRSGKTSKDKYQK--IVKIGDHAESIKTLADFIKDYPDCDLEL 62 (71) Q Consensus 7 llngwgvnfrflldgyrsgktskdkyqk--ivkigdhaesiktladfikdypdcdlel 62 (71) |-+||.+...|--+++-.+..-.- -| .....|.++-+..|....+.||++-..| T Consensus 33 l~qG~~i~iE~ad~r~~~~~~W~~--w~lP~f~~~d~~~Vl~ele~c~~~~p~~YVRl 88 (109) T 1rbl_M 33 IEQGFHPLIEFNEHSNPEEFYWTM--WKLPLFACAAPQQVLDEVRECRSEYGDCYIRV 88 (109) T ss_dssp HHHTCEEEEEEESCCCTTCCCCEE--CSSCCTTCCCHHHHHHHHHHHHHHCTTSEEEE T ss_pred HHCCCEEEEEEEECCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 847880148870068734315023--25685236767899999999999799766989 No 5 >>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP} (A:1-78,A:178-209) Probab=13.09 E-value=47 Score=16.53 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=19.8 Q ss_pred HHHHHHHHHHCCCCCEEHHHHHHHH Q ss_conf 9999999631888740077543320 Q gi|254781090|r 45 IKTLADFIKDYPDCDLELENLVTDD 69 (71) Q Consensus 45 iktladfikdypdcdlelenlvtdd 69 (71) .+.+++|.+.||+..++++...+++ T Consensus 21 p~~L~~F~~~~P~I~i~i~~~~s~~ 45 (110) T 2ql3_A 21 PSXLYAFTAEYPRASVEFREDTQNR 45 (110) T ss_dssp HHHHHHHHHHCTTEEEEEEECCHHH T ss_pred HHHHHHHHHHCCCCEEEEEECCCHH T ss_conf 9999999998889789999764677 No 6 >>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:1-65) Probab=12.17 E-value=91 Score=14.93 Aligned_cols=46 Identities=17% Similarity=0.433 Sum_probs=37.2 Q ss_pred EEEHHHCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCCEEHH Q ss_conf 23112338643788998986-20116679999999631888740077 Q gi|254781090|r 18 LLDGYRSGKTSKDKYQKIVK-IGDHAESIKTLADFIKDYPDCDLELE 63 (71) Q Consensus 18 lldgyrsgktskdkyqkivk-igdhaesiktladfikdypdcdlele 63 (71) +|-.++.|++..+-|..+.+ +|+++-+-.+..-+.+.+-.-+.+|+ T Consensus 15 ilyef~~g~~~~ea~~~~c~~~G~~~~~~~~~~~Wf~rF~~G~~dl~ 61 (65) T 3hot_A 15 LIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVD 61 (65) T ss_dssp HHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCS T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 99999859989999999999846688878899999999864886667 No 7 >>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} (A:580-683) Probab=11.95 E-value=46 Score=16.57 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 6679999999631888 Q gi|254781090|r 42 AESIKTLADFIKDYPD 57 (71) Q Consensus 42 aesiktladfikdypd 57 (71) .-++++|||+|.|||- T Consensus 59 dl~~~sL~d~I~~~~~ 74 (104) T 1yvl_A 59 ELSAVTFPDIIRNYKV 74 (104) T ss_dssp HHTTSCHHHHHHHCCE T ss_pred HHHHCCHHHHHHHHHH T ss_conf 5532788899987788 No 8 >>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=11.19 E-value=62 Score=15.84 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=22.9 Q ss_pred HCCHHHHHHHHHHHHHHCCCCCEEHH Q ss_conf 20116679999999631888740077 Q gi|254781090|r 38 IGDHAESIKTLADFIKDYPDCDLELE 63 (71) Q Consensus 38 igdhaesiktladfikdypdcdlele 63 (71) -|+.|-+.+.|.++.+..|++.+.-. T Consensus 32 ~G~~AP~~k~L~~WL~~hP~y~v~p~ 57 (83) T 2dl6_A 32 VGEDAPRRAELEMWLQGHPEFAVDPR 57 (83) T ss_dssp CGGGSCBSTTHHHHHHHCTTSCBCHH T ss_pred CCCCCCCHHHHHHHHHHCCCCEECCC T ss_conf 46668677799999998859577854 No 9 >>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase B; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodulin binding, transferase; HET: ATP; 2.50A {Mus musculus} (A:98-152) Probab=9.97 E-value=1.5e+02 Score=13.78 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=15.1 Q ss_pred CCCCCHHHHHHHHHHCCHHH Q ss_conf 38643788998986201166 Q gi|254781090|r 24 SGKTSKDKYQKIVKIGDHAE 43 (71) Q Consensus 24 sgktskdkyqkivkigdhae 43 (71) +-+--+|-|||.|.+.-.|- T Consensus 12 ~p~lR~DlY~KMi~vDp~aP 31 (55) T 2aqx_A 12 KPSLRKDMYQKMVEVDPEAP 31 (55) T ss_dssp SCCCBHHHHHHHHHHCTTCS T ss_pred HHHCCCCHHHHHHCCCCCCC T ss_conf 33102110100002465543 No 10 >>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A (A:448-489) Probab=9.91 E-value=1.4e+02 Score=13.86 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHCC Q ss_conf 43788998986201 Q gi|254781090|r 27 TSKDKYQKIVKIGD 40 (71) Q Consensus 27 tskdkyqkivkigd 40 (71) +..++|+++|+-|+ T Consensus 23 ~Gl~~y~~Vv~~G~ 36 (42) T 3c68_A 23 SGLNNYARVVEKGQ 36 (42) T ss_dssp ECHHHHHHHHHHTC T ss_pred CHHHHHHHHHHHHH T ss_conf 11225667654320 Done!