Query gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 71 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:17:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781090.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2ckca1 d.76.2.1 (A:2563-2622) 11.0 42 0.0031 14.6 1.2 25 37-61 18-42 (60) 2 d2ckaa1 d.76.2.1 (A:2028-2085) 10.1 48 0.0035 14.3 1.2 26 37-62 20-45 (58) 3 d1xria_ c.45.1.1 (A:) Putative 9.9 65 0.0047 13.6 2.0 27 13-39 6-33 (151) 4 d1f20a1 b.43.4.1 (A:963-1232) 9.2 64 0.0047 13.6 1.6 21 47-67 183-203 (270) 5 d1vcta1 a.7.12.1 (A:9-107) Hyp 8.7 61 0.0044 13.7 1.3 15 34-48 79-93 (99) 6 d1ixca2 c.94.1.1 (A:90-294) Ly 8.5 34 0.0025 15.1 -0.1 22 46-67 19-40 (205) 7 d1p9ya_ d.241.2.1 (A:) Trigger 8.3 76 0.0055 13.2 2.9 32 17-48 39-70 (117) 8 d2v0fa1 d.76.2.1 (A:2629-2715) 7.8 36 0.0026 15.0 -0.2 26 38-63 31-56 (87) 9 d2p0ta1 a.290.1.1 (A:22-169) U 6.3 95 0.0069 12.7 1.7 23 44-66 95-118 (148) 10 d1bf5a3 d.93.1.1 (A:569-710) S 6.3 43 0.0031 14.6 -0.5 12 44-55 72-83 (142) No 1 >d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]} Probab=11.01 E-value=42 Score=14.61 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.3 Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCEE Q ss_conf 6201166799999996318887400 Q gi|254781090|r 37 KIGDHAESIKTLADFIKDYPDCDLE 61 (71) Q Consensus 37 kigdhaesiktladfikdypdcdle 61 (71) --|++|-+.+.|.++.+..|+-... T Consensus 18 L~G~~AP~~~~L~~WL~~hP~y~Vd 42 (60) T d2ckca1 18 LVGEDAPKNKDLVEWLKLHPTYTVD 42 (60) T ss_dssp ECTTSSCBHHHHHHHHHHCTTEEES T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 0476786777999999989891863 No 2 >d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]} Probab=10.10 E-value=48 Score=14.32 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=22.0 Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCEEH Q ss_conf 62011667999999963188874007 Q gi|254781090|r 37 KIGDHAESIKTLADFIKDYPDCDLEL 62 (71) Q Consensus 37 kigdhaesiktladfikdypdcdlel 62 (71) -.|++|-+.+.|.++.+..|+-...- T Consensus 20 L~G~~AP~~~~L~~WL~~nP~y~V~P 45 (58) T d2ckaa1 20 LVGEDAPRRAELEMWLQGHPEFAVDP 45 (58) T ss_dssp ECTTSSCBHHHHHHHHHHCTTEEECH T ss_pred CCCCCCCCHHHHHHHHHHCCCCEECH T ss_conf 35567967779999999888978884 No 3 >d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=9.85 E-value=65 Score=13.58 Aligned_cols=27 Identities=26% Similarity=0.616 Sum_probs=18.6 Q ss_pred CEEEEEEEH-HHCCCCCHHHHHHHHHHC Q ss_conf 012112311-233864378899898620 Q gi|254781090|r 13 VNFRFLLDG-YRSGKTSKDKYQKIVKIG 39 (71) Q Consensus 13 vnfrflldg-yrsgktskdkyqkivkig 39 (71) .||+..-+| ||||.-+...++.+.+.| T Consensus 6 ~nF~~V~~~lyRs~~~t~~~~~~L~~lg 33 (151) T d1xria_ 6 LNFSMVDNGIFRSGFPDSANFSFLQTLG 33 (151) T ss_dssp TTCEEEETTEEEESCCCHHHHHHHHHHT T ss_pred CCCCEECCCCEECCCCCHHHHHHHHHCC T ss_conf 1124335895665998987799999879 No 4 >d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=9.24 E-value=64 Score=13.60 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=17.9 Q ss_pred HHHHHHHHCCCCCEEHHHHHH Q ss_conf 999996318887400775433 Q gi|254781090|r 47 TLADFIKDYPDCDLELENLVT 67 (71) Q Consensus 47 tladfikdypdcdlelenlvt 67 (71) ++.|++.+||.|.+.++.++. T Consensus 183 tlldvL~~fps~~~pl~~ll~ 203 (270) T d1f20a1 183 TMVEVLEEFPSIQMPATLLLT 203 (270) T ss_dssp CHHHHHHHSTTBCBCHHHHHH T ss_pred CHHHHHHHCCCCCCCHHHHHH T ss_conf 699999862435899999997 No 5 >d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Probab=8.74 E-value=61 Score=13.75 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=9.3 Q ss_pred HHHHHCCHHHHHHHH Q ss_conf 898620116679999 Q gi|254781090|r 34 KIVKIGDHAESIKTL 48 (71) Q Consensus 34 kivkigdhaesiktl 48 (71) -+-.|||||..|-.. T Consensus 79 ~lERIgDha~nIae~ 93 (99) T d1vcta1 79 AIEDISNAAGDLAKM 93 (99) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 6 >d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]} Probab=8.52 E-value=34 Score=15.12 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=16.2 Q ss_pred HHHHHHHHHCCCCCEEHHHHHH Q ss_conf 9999996318887400775433 Q gi|254781090|r 46 KTLADFIKDYPDCDLELENLVT 67 (71) Q Consensus 46 ktladfikdypdcdlelenlvt 67 (71) ..+++|.+.||+..+++....+ T Consensus 19 ~~l~~f~~~~P~v~l~i~~~~~ 40 (205) T d1ixca2 19 LLLRAFLTSTPTATVSLTHMTK 40 (205) T ss_dssp HHHHHHHHHCTTEEEEEEECCH T ss_pred HHHHHHHHHCCCCEEEEEECCC T ss_conf 9999999988796899998877 No 7 >d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]} Probab=8.28 E-value=76 Score=13.21 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=18.9 Q ss_pred EEEEHHHCCCCCHHHHHHHHHHCCHHHHHHHH Q ss_conf 12311233864378899898620116679999 Q gi|254781090|r 17 FLLDGYRSGKTSKDKYQKIVKIGDHAESIKTL 48 (71) Q Consensus 17 flldgyrsgktskdkyqkivkigdhaesiktl 48 (71) .-+.|+|-||....-..+...-.=++|.+..+ T Consensus 39 ~~ipGFRkGKvP~~vi~k~yg~~i~~e~~~~l 70 (117) T d1p9ya_ 39 VRIDGLRKGKVPMNIVAQRYGASVRQDVLGDL 70 (117) T ss_dssp CCCTTSCTTCSCHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 88888678876589999987488999999999 No 8 >d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]} Probab=7.79 E-value=36 Score=14.97 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.3 Q ss_pred HCCHHHHHHHHHHHHHHCCCCCEEHH Q ss_conf 20116679999999631888740077 Q gi|254781090|r 38 IGDHAESIKTLADFIKDYPDCDLELE 63 (71) Q Consensus 38 igdhaesiktladfikdypdcdlele 63 (71) -|++|-..+.|.++.+..|++...-+ T Consensus 31 ~G~~AP~~~~L~~WL~~nP~y~V~P~ 56 (87) T d2v0fa1 31 GGAMAPPMKDLPRWLEENPEFAVAPD 56 (87) T ss_dssp CSSSSCBGGGHHHHHHHCTTEEECHH T ss_pred CCCCCCCHHHHHHHHHHCCCCEECCC T ss_conf 45558227789999998889601732 No 9 >d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]} Probab=6.33 E-value=95 Score=12.67 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHCCCCCEE-HHHHH Q ss_conf 799999996318887400-77543 Q gi|254781090|r 44 SIKTLADFIKDYPDCDLE-LENLV 66 (71) Q Consensus 44 siktladfikdypdcdle-lenlv 66 (71) .-..+..|+..||+.|.. |-+|| T Consensus 95 ~~~al~e~~~~~P~~DrQ~LRqLi 118 (148) T d2p0ta1 95 DDADLEKFVIEYPDADRQQLRSLI 118 (148) T ss_dssp CHHHHHHHHHHSTTSCHHHHHHHH T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 879999999988646799999999 No 10 >d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=6.29 E-value=43 Score=14.59 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHC Q ss_conf 799999996318 Q gi|254781090|r 44 SIKTLADFIKDY 55 (71) Q Consensus 44 siktladfikdy 55 (71) ++.+|||+|.|| T Consensus 72 ~~~sLad~Ird~ 83 (142) T d1bf5a3 72 SAVTFPDIIRNY 83 (142) T ss_dssp HSSCHHHHHHTC T ss_pred CCCCHHHHHHHH T ss_conf 208899998777 Done!