Query         gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:17:17 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781090.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2ckca1 d.76.2.1 (A:2563-2622)  11.0      42  0.0031   14.6   1.2   25   37-61     18-42  (60)
  2 d2ckaa1 d.76.2.1 (A:2028-2085)  10.1      48  0.0035   14.3   1.2   26   37-62     20-45  (58)
  3 d1xria_ c.45.1.1 (A:) Putative   9.9      65  0.0047   13.6   2.0   27   13-39      6-33  (151)
  4 d1f20a1 b.43.4.1 (A:963-1232)    9.2      64  0.0047   13.6   1.6   21   47-67    183-203 (270)
  5 d1vcta1 a.7.12.1 (A:9-107) Hyp   8.7      61  0.0044   13.7   1.3   15   34-48     79-93  (99)
  6 d1ixca2 c.94.1.1 (A:90-294) Ly   8.5      34  0.0025   15.1  -0.1   22   46-67     19-40  (205)
  7 d1p9ya_ d.241.2.1 (A:) Trigger   8.3      76  0.0055   13.2   2.9   32   17-48     39-70  (117)
  8 d2v0fa1 d.76.2.1 (A:2629-2715)   7.8      36  0.0026   15.0  -0.2   26   38-63     31-56  (87)
  9 d2p0ta1 a.290.1.1 (A:22-169) U   6.3      95  0.0069   12.7   1.7   23   44-66     95-118 (148)
 10 d1bf5a3 d.93.1.1 (A:569-710) S   6.3      43  0.0031   14.6  -0.5   12   44-55     72-83  (142)

No 1  
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.01  E-value=42  Score=14.61  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             6201166799999996318887400
Q gi|254781090|r   37 KIGDHAESIKTLADFIKDYPDCDLE   61 (71)
Q Consensus        37 kigdhaesiktladfikdypdcdle   61 (71)
                      --|++|-+.+.|.++.+..|+-...
T Consensus        18 L~G~~AP~~~~L~~WL~~hP~y~Vd   42 (60)
T d2ckca1          18 LVGEDAPKNKDLVEWLKLHPTYTVD   42 (60)
T ss_dssp             ECTTSSCBHHHHHHHHHHCTTEEES
T ss_pred             ECCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             0476786777999999989891863


No 2  
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.10  E-value=48  Score=14.32  Aligned_cols=26  Identities=15%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCCEEH
Q ss_conf             62011667999999963188874007
Q gi|254781090|r   37 KIGDHAESIKTLADFIKDYPDCDLEL   62 (71)
Q Consensus        37 kigdhaesiktladfikdypdcdlel   62 (71)
                      -.|++|-+.+.|.++.+..|+-...-
T Consensus        20 L~G~~AP~~~~L~~WL~~nP~y~V~P   45 (58)
T d2ckaa1          20 LVGEDAPRRAELEMWLQGHPEFAVDP   45 (58)
T ss_dssp             ECTTSSCBHHHHHHHHHHCTTEEECH
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCEECH
T ss_conf             35567967779999999888978884


No 3  
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.85  E-value=65  Score=13.58  Aligned_cols=27  Identities=26%  Similarity=0.616  Sum_probs=18.6

Q ss_pred             CEEEEEEEH-HHCCCCCHHHHHHHHHHC
Q ss_conf             012112311-233864378899898620
Q gi|254781090|r   13 VNFRFLLDG-YRSGKTSKDKYQKIVKIG   39 (71)
Q Consensus        13 vnfrflldg-yrsgktskdkyqkivkig   39 (71)
                      .||+..-+| ||||.-+...++.+.+.|
T Consensus         6 ~nF~~V~~~lyRs~~~t~~~~~~L~~lg   33 (151)
T d1xria_           6 LNFSMVDNGIFRSGFPDSANFSFLQTLG   33 (151)
T ss_dssp             TTCEEEETTEEEESCCCHHHHHHHHHHT
T ss_pred             CCCCEECCCCEECCCCCHHHHHHHHHCC
T ss_conf             1124335895665998987799999879


No 4  
>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.24  E-value=64  Score=13.60  Aligned_cols=21  Identities=19%  Similarity=0.544  Sum_probs=17.9

Q ss_pred             HHHHHHHHCCCCCEEHHHHHH
Q ss_conf             999996318887400775433
Q gi|254781090|r   47 TLADFIKDYPDCDLELENLVT   67 (71)
Q Consensus        47 tladfikdypdcdlelenlvt   67 (71)
                      ++.|++.+||.|.+.++.++.
T Consensus       183 tlldvL~~fps~~~pl~~ll~  203 (270)
T d1f20a1         183 TMVEVLEEFPSIQMPATLLLT  203 (270)
T ss_dssp             CHHHHHHHSTTBCBCHHHHHH
T ss_pred             CHHHHHHHCCCCCCCHHHHHH
T ss_conf             699999862435899999997


No 5  
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.74  E-value=61  Score=13.75  Aligned_cols=15  Identities=20%  Similarity=0.344  Sum_probs=9.3

Q ss_pred             HHHHHCCHHHHHHHH
Q ss_conf             898620116679999
Q gi|254781090|r   34 KIVKIGDHAESIKTL   48 (71)
Q Consensus        34 kivkigdhaesiktl   48 (71)
                      -+-.|||||..|-..
T Consensus        79 ~lERIgDha~nIae~   93 (99)
T d1vcta1          79 AIEDISNAAGDLAKM   93 (99)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 6  
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=8.52  E-value=34  Score=15.12  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=16.2

Q ss_pred             HHHHHHHHHCCCCCEEHHHHHH
Q ss_conf             9999996318887400775433
Q gi|254781090|r   46 KTLADFIKDYPDCDLELENLVT   67 (71)
Q Consensus        46 ktladfikdypdcdlelenlvt   67 (71)
                      ..+++|.+.||+..+++....+
T Consensus        19 ~~l~~f~~~~P~v~l~i~~~~~   40 (205)
T d1ixca2          19 LLLRAFLTSTPTATVSLTHMTK   40 (205)
T ss_dssp             HHHHHHHHHCTTEEEEEEECCH
T ss_pred             HHHHHHHHHCCCCEEEEEECCC
T ss_conf             9999999988796899998877


No 7  
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=8.28  E-value=76  Score=13.21  Aligned_cols=32  Identities=19%  Similarity=0.270  Sum_probs=18.9

Q ss_pred             EEEEHHHCCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             12311233864378899898620116679999
Q gi|254781090|r   17 FLLDGYRSGKTSKDKYQKIVKIGDHAESIKTL   48 (71)
Q Consensus        17 flldgyrsgktskdkyqkivkigdhaesiktl   48 (71)
                      .-+.|+|-||....-..+...-.=++|.+..+
T Consensus        39 ~~ipGFRkGKvP~~vi~k~yg~~i~~e~~~~l   70 (117)
T d1p9ya_          39 VRIDGLRKGKVPMNIVAQRYGASVRQDVLGDL   70 (117)
T ss_dssp             CCCTTSCTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             88888678876589999987488999999999


No 8  
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.79  E-value=36  Score=14.97  Aligned_cols=26  Identities=19%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCCEEHH
Q ss_conf             20116679999999631888740077
Q gi|254781090|r   38 IGDHAESIKTLADFIKDYPDCDLELE   63 (71)
Q Consensus        38 igdhaesiktladfikdypdcdlele   63 (71)
                      -|++|-..+.|.++.+..|++...-+
T Consensus        31 ~G~~AP~~~~L~~WL~~nP~y~V~P~   56 (87)
T d2v0fa1          31 GGAMAPPMKDLPRWLEENPEFAVAPD   56 (87)
T ss_dssp             CSSSSCBGGGHHHHHHHCTTEEECHH
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEECCC
T ss_conf             45558227789999998889601732


No 9  
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=6.33  E-value=95  Score=12.67  Aligned_cols=23  Identities=35%  Similarity=0.706  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHCCCCCEE-HHHHH
Q ss_conf             799999996318887400-77543
Q gi|254781090|r   44 SIKTLADFIKDYPDCDLE-LENLV   66 (71)
Q Consensus        44 siktladfikdypdcdle-lenlv   66 (71)
                      .-..+..|+..||+.|.. |-+||
T Consensus        95 ~~~al~e~~~~~P~~DrQ~LRqLi  118 (148)
T d2p0ta1          95 DDADLEKFVIEYPDADRQQLRSLI  118 (148)
T ss_dssp             CHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             879999999988646799999999


No 10 
>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.29  E-value=43  Score=14.59  Aligned_cols=12  Identities=42%  Similarity=0.747  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             799999996318
Q gi|254781090|r   44 SIKTLADFIKDY   55 (71)
Q Consensus        44 siktladfikdy   55 (71)
                      ++.+|||+|.||
T Consensus        72 ~~~sLad~Ird~   83 (142)
T d1bf5a3          72 SAVTFPDIIRNY   83 (142)
T ss_dssp             HSSCHHHHHHTC
T ss_pred             CCCCHHHHHHHH
T ss_conf             208899998777


Done!