BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62] (71 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62] gi|254040767|gb|ACT57563.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62] Length = 71 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 71/71 (100%), Positives = 71/71 (100%) Query: 1 MKPIIHLLNGWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKDYPDCDL 60 MKPIIHLLNGWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKDYPDCDL Sbjct: 1 MKPIIHLLNGWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKDYPDCDL 60 Query: 61 ELENLVTDDIL 71 ELENLVTDDIL Sbjct: 61 ELENLVTDDIL 71 >gi|325071179|gb|ADY75699.1| replication initiator protein [Tomato leaf curl New Delhi virus] Length = 361 Score = 34.6 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 10/62 (16%) Query: 11 WGVNFRFLLDGY--RSG-KTSKDKYQKIVKIGDHAESIKTLADFI-KDYPDCDLELENLV 66 WGV F +DG R G KT+ D Y + + G+ E++K L +F KDY L+ NL+ Sbjct: 113 WGV---FQIDGRSARGGQKTANDAYAQAINTGNKDEALKVLKEFAPKDYV---LQFHNLI 166 Query: 67 TD 68 T+ Sbjct: 167 TN 168 >gi|210134425|ref|YP_002300864.1| peptide methionine sulfoxide reductase [Helicobacter pylori P12] gi|210132393|gb|ACJ07384.1| peptide methionine sulfoxide reductase [Helicobacter pylori P12] Length = 359 Score = 34.2 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%) Query: 21 GYRSGKTSKDKYQKIVKIGDHAESIKTLAD 50 GY +GKTS Y+K+ K DHAES+K + D Sbjct: 64 GYANGKTSSTNYEKLHK-SDHAESVKVIYD 92 >gi|331010200|gb|EGH90256.1| hypothetical protein PSYTB_10983 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 642 Score = 34.2 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 3 PIIHLLNGWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKDYPDCDLE 61 P+I LL G G F LLD + G+ ++D+Y+K + D + T AD +++ LE Sbjct: 510 PLISLLMGRGETFVVLLDDDKEGRKARDRYRKEWILSDQV--VITYADIDQEFSGKALE 566 >gi|257486731|ref|ZP_05640772.1| hypothetical protein PsyrptA_25885 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 642 Score = 34.2 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 3 PIIHLLNGWGVNFRFLLDGYRSGKTSKDKYQKIVKIGDHAESIKTLADFIKDYPDCDLE 61 P+I LL G G F LLD + G+ ++D+Y+K + D + T AD +++ LE Sbjct: 510 PLISLLMGRGETFVVLLDDDKEGRKARDRYRKEWILSDQV--VITYADIDQEFSGKALE 566 >gi|227500467|ref|ZP_03930529.1| peptide-methionine (R)-S-oxide reductase [Anaerococcus tetradius ATCC 35098] gi|227217530|gb|EEI82849.1| peptide-methionine (R)-S-oxide reductase [Anaerococcus tetradius ATCC 35098] Length = 161 Score = 34.2 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 11/60 (18%) Query: 1 MKPIIHLLNG--WGVNFRF-----LLD---GYRSGKTSKDKYQKIVKIGDHAESIKTLAD 50 MK II+L G WGV+ F +L+ Y +GKT K Y+ + K DHAE++K D Sbjct: 1 MKKIIYLAGGCFWGVDAYFSSIKGVLETETAYANGKTKKTYYENL-KTTDHAETVKITYD 59 >gi|293390351|ref|ZP_06634685.1| peptide methionine sulfoxide reductase MsrA/msrB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950885|gb|EFE01004.1| peptide methionine sulfoxide reductase MsrA/msrB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 356 Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Query: 19 LDGYRSGKTSKDKYQKIVKIGDHAESIKTLAD 50 + GY +GK+ K YQKI I DHAE++K D Sbjct: 72 ISGYANGKSDKTNYQKI-GITDHAETVKVTYD 102 >gi|261867936|ref|YP_003255858.1| peptide methionine sulfoxide reductase MsrA/msrB [Aggregatibacter actinomycetemcomitans D11S-1] gi|20455137|sp|Q9AL99|MSRAB_AGGAC RecName: Full=Peptide methionine sulfoxide reductase MsrA/MsrB; Includes: RecName: Full=Peptide methionine sulfoxide reductase MsrA; Short=Protein-methionine-S-oxide reductase; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; Includes: RecName: Full=Peptide methionine sulfoxide reductase MsrB; AltName: Full=Peptide-methionine (R)-S-oxide reductase gi|12963881|gb|AAK07680.1| methionine sulfoxide reductase [Aggregatibacter actinomycetemcomitans] gi|261413268|gb|ACX82639.1| peptide methionine sulfoxide reductase MsrA/msrB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 356 Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Query: 19 LDGYRSGKTSKDKYQKIVKIGDHAESIKTLAD 50 + GY +GK+ K YQKI I DHAE++K D Sbjct: 72 ISGYANGKSDKTNYQKI-GITDHAETVKVTYD 102 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.321 0.144 0.434 Lambda K H 0.267 0.0472 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 830,400,841 Number of Sequences: 14124377 Number of extensions: 30685680 Number of successful extensions: 82738 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 82736 Number of HSP's gapped (non-prelim): 9 length of query: 71 length of database: 4,842,793,630 effective HSP length: 43 effective length of query: 28 effective length of database: 4,235,445,419 effective search space: 118592471732 effective search space used: 118592471732 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 76 (33.7 bits)