RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781090|ref|YP_003065503.1| hypothetical protein
CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>gnl|CDD|178387 PLN02790, PLN02790, transketolase.
          Length = 654

 Score = 28.4 bits (64), Expect = 0.40
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 29  KDKYQKIVKIGDHAES--IKTLADFIKDYPDCDLELENLVTDDI 70
           K  + K  K G   E+      A++ K YP+   EL++L++ ++
Sbjct: 283 KSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGEL 326


>gnl|CDD|182990 PRK11139, PRK11139, DNA-binding transcriptional activator GcvA;
           Provisional.
          Length = 297

 Score = 27.9 bits (63), Expect = 0.63
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 6/29 (20%)

Query: 48  LADFIKDYPDCDLEL------ENLVTDDI 70
           L+ F + +PD D+ L      E+ + DD+
Sbjct: 113 LSSFNEAHPDIDVRLKAVDRLEDFLRDDV 141


>gnl|CDD|131842 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF.  Members of
          this protein family are the product of one of seven
          genes regularly clustered in operons to encode the
          proteins of the tol-pal system, which is critical for
          maintaining the integrity of the bacterial outer
          membrane. The gene for this periplasmic protein has
          been designated orf2 and ybgF. All members of the seed
          alignment were from unique tol-pal gene regions from
          completed bacterial genomes. The architecture of this
          protein is a signal sequence, a low-complexity region
          usually rich in Asn and Gln, a well-conserved region
          with tandem repeats that resemble the tetratricopeptide
          (TPR) repeat, involved in protein-protein interaction.
          Length = 119

 Score = 26.9 bits (60), Expect = 1.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 35 IVKIGDHAESIKTLADFIKDYPD 57
          ++K GD+A++I+    F+K YP 
Sbjct: 12 VLKAGDYADAIQAFQAFLKKYPK 34



 Score = 26.5 bits (59), Expect = 1.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 36  VKIGDHAESIKTLADFIKDYPD 57
            ++GD  ++  TL   IK YP 
Sbjct: 87  QELGDKEKAKATLQQVIKRYPG 108


>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide
           reductase A/B protein; Provisional.
          Length = 521

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 5   IHLLNG--WGVNFRF--------LLDGYRSGKTSKDKYQKIVKIGDHAESIKTLAD 50
           I+L  G  WG+   F         + GY +G T    Y+ + +   HAE++K   D
Sbjct: 201 IYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYD 256


>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase;
           Provisional.
          Length = 255

 Score = 25.4 bits (56), Expect = 3.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 22  YRSGKTSKDKYQKIVKIGDHAESIKTLADFIK 53
           YRSG + +    ++      +  ++ L DFIK
Sbjct: 216 YRSGLSVQQAVAELELQQFESPEVEELIDFIK 247


>gnl|CDD|183500 PRK12397, PRK12397, propionate kinase; Reviewed.
          Length = 404

 Score = 25.6 bits (56), Expect = 3.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 26 KTSKDKYQKIVKIGDHAESIKTLADFIKDY 55
          KT   K+Q+ V + DH +++  L + +  Y
Sbjct: 46 KTHSQKWQETVPVADHRDAVTLLLEKLLGY 75


>gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional.
          Length = 275

 Score = 25.0 bits (55), Expect = 4.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 42 AESIKTLADFIKDYPDCDLELENLVTDD 69
          A    TLAD  + Y D  L L   VTD 
Sbjct: 34 ARDTATLADLAEKYGDRLLPLALDVTDR 61


>gnl|CDD|161740 TIGR00169, leuB, 3-isopropylmalate dehydrogenase.  This model will
           not find all isopropylmalate dehydrogenases; the enzyme
           from Sulfolobus sp. strain 7 is more similar to
           mitochondrial NAD-dependent isocitrate dehydrogenases
           than to other known isopropylmalate dehydrogenases and
           was omitted to improve the specificity of the model. It
           scores below the cutoff and below some enzymes known not
           to be isopropylmalate dehydrogenase.
          Length = 349

 Score = 24.7 bits (54), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 46  KTLADFIKDYPDCDLELENLVTD 68
           KT+ +  K+YP  D+ELE+   D
Sbjct: 200 KTVEEIAKEYP--DVELEHQYID 220


>gnl|CDD|178447 PLN02856, PLN02856, fumarylacetoacetase.
          Length = 424

 Score = 24.3 bits (53), Expect = 8.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 48 LADFIKDYPDCDLELENL 65
          L  FI   PD D  ++NL
Sbjct: 5  LKSFIDVAPDSDFPIQNL 22


>gnl|CDD|179506 PRK02939, PRK02939, lipoprotein; Reviewed.
          Length = 236

 Score = 23.9 bits (52), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 13  VNFRFLLDGYRSGKTSKDK 31
           V +R+  +GY  GKT+K  
Sbjct: 143 VEYRYDDEGYPLGKTTKSN 161


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.144    0.434 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,153,262
Number of extensions: 56053
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 21
Length of query: 71
Length of database: 5,994,473
Length adjustment: 42
Effective length of query: 29
Effective length of database: 5,086,937
Effective search space: 147521173
Effective search space used: 147521173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)