RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62] (71 letters) >d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]} Length = 237 Score = 28.0 bits (61), Expect = 0.22 Identities = 6/24 (25%), Positives = 9/24 (37%) Query: 48 LADFIKDYPDCDLELENLVTDDIL 71 + FI+ YP L + I Sbjct: 25 IKGFIERYPRVSLHMHQGSPTQIA 48 >d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]} Length = 220 Score = 25.9 bits (55), Expect = 0.95 Identities = 6/24 (25%), Positives = 11/24 (45%) Query: 48 LADFIKDYPDCDLELENLVTDDIL 71 + F + +P+ LEL +I Sbjct: 25 IKAFRELFPEVRLELIQGTPQEIA 48 >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262 Score = 24.4 bits (52), Expect = 2.4 Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 22 YRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD 54 YRSGKT + +I ++ + +K DF Sbjct: 223 YRSGKTLDEVKPEIAELAETYPEVKAFTDFFAR 255 >d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]} Length = 205 Score = 24.4 bits (51), Expect = 2.7 Identities = 5/21 (23%), Positives = 9/21 (42%) Query: 48 LADFIKDYPDCDLELENLVTD 68 L F+ P + L ++ D Sbjct: 21 LRAFLTSTPTATVSLTHMTKD 41 >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 Score = 23.5 bits (49), Expect = 5.4 Identities = 4/33 (12%), Positives = 15/33 (45%) Query: 22 YRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD 54 +R + ++ + ++ + +K + FI + Sbjct: 217 FRPIPSLRESAKLELEEHANNPFVKEICSFILE 249 >d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Score = 22.8 bits (49), Expect = 8.8 Identities = 4/19 (21%), Positives = 10/19 (52%) Query: 39 GDHAESIKTLADFIKDYPD 57 G+ A L +++ +P+ Sbjct: 22 GEDAPRRAELEMWLQGHPE 40 >d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Score = 22.4 bits (48), Expect = 9.9 Identities = 6/19 (31%), Positives = 11/19 (57%) Query: 39 GDHAESIKTLADFIKDYPD 57 G+ A K L +++K +P Sbjct: 20 GEDAPKNKDLVEWLKLHPT 38 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.144 0.434 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 285,921 Number of extensions: 10781 Number of successful extensions: 55 Number of sequences better than 10.0: 1 Number of HSP's gapped: 55 Number of HSP's successfully gapped: 12 Length of query: 71 Length of database: 2,407,596 Length adjustment: 39 Effective length of query: 32 Effective length of database: 1,872,126 Effective search space: 59908032 Effective search space used: 59908032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.4 bits)