RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781090|ref|YP_003065503.1| hypothetical protein
CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type
          protein CysB {Klebsiella aerogenes [TaxId: 28451]}
          Length = 237

 Score = 28.0 bits (61), Expect = 0.22
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 48 LADFIKDYPDCDLELENLVTDDIL 71
          +  FI+ YP   L +       I 
Sbjct: 25 IKGFIERYPRVSLHMHQGSPTQIA 48


>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl
          {Escherichia coli [TaxId: 562]}
          Length = 220

 Score = 25.9 bits (55), Expect = 0.95
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 48 LADFIKDYPDCDLELENLVTDDIL 71
          +  F + +P+  LEL      +I 
Sbjct: 25 IKAFRELFPEVRLELIQGTPQEIA 48


>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
           {Escherichia coli, gene lpxA [TaxId: 562]}
          Length = 262

 Score = 24.4 bits (52), Expect = 2.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 22  YRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD 54
           YRSGKT  +   +I ++ +    +K   DF   
Sbjct: 223 YRSGKTLDEVKPEIAELAETYPEVKAFTDFFAR 255


>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR
          {Ralstonia eutropha [TaxId: 106590]}
          Length = 205

 Score = 24.4 bits (51), Expect = 2.7
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 48 LADFIKDYPDCDLELENLVTD 68
          L  F+   P   + L ++  D
Sbjct: 21 LRAFLTSTPTATVSLTHMTKD 41


>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase
           {Helicobacter pylori [TaxId: 210]}
          Length = 259

 Score = 23.5 bits (49), Expect = 5.4
 Identities = 4/33 (12%), Positives = 15/33 (45%)

Query: 22  YRSGKTSKDKYQKIVKIGDHAESIKTLADFIKD 54
           +R   + ++  +  ++   +   +K +  FI +
Sbjct: 217 FRPIPSLRESAKLELEEHANNPFVKEICSFILE 249


>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding
          protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 22.8 bits (49), Expect = 8.8
 Identities = 4/19 (21%), Positives = 10/19 (52%)

Query: 39 GDHAESIKTLADFIKDYPD 57
          G+ A     L  +++ +P+
Sbjct: 22 GEDAPRRAELEMWLQGHPE 40


>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding
          protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 60

 Score = 22.4 bits (48), Expect = 9.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 39 GDHAESIKTLADFIKDYPD 57
          G+ A   K L +++K +P 
Sbjct: 20 GEDAPKNKDLVEWLKLHPT 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.144    0.434 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 285,921
Number of extensions: 10781
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 12
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)