HHsearch alignment for GI: 254781091 and conserved domain: COG0112
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism].
Probab=99.84 E-value=5.8e-20 Score=140.65 Aligned_cols=330 Identities=17% Similarity=0.193 Sum_probs=209.5
Q ss_pred CCCCHHHHHHHHHHHH-HC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 8989899999999996-42--885236589999999999-9999999972989778988668538764455654421022
Q gi|254781091|r 13 APLLEVVRQSFVKSLD-FY--GNPSSVHKEGQKTRLYIE-ESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSH 88 (383)
Q Consensus 13 tp~~~~v~~a~~~~~~-~~--~n~~s~h~~~~~~~~~~e-~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~ 88 (383)
T Consensus 36 N~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPh-SGs~AN~av~~All~p--- 111 (413)
T COG0112 36 NFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPH-SGSQANQAVYLALLQP--- 111 (413)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHHCCC---
T ss_conf 547899999974577530115899763567872179999999999999848875045888-7568999999997389---
Q ss_pred CCCCCEEEECCCCCCCC---CCCCCCCC--CCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 45664587333212211---12222222--222222222-2221110234553244311356532654034344433321
Q gi|254781091|r 89 KISIDSLYISAIEHPAV---YAGGHFPS--HKIHKIPVL-SKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP 162 (383)
Q Consensus 89 ~~~~~~ii~s~~eH~s~---~~~~~~~~--~~v~~v~~~-~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~p 162 (383)
T Consensus 112 ---GD~imgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~k----PKlii~-G~Sa-Y~r~id 182 (413)
T COG0112 112 ---GDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVK----PKLIIA-GGSA-YSRPID 182 (413)
T ss_pred ---CCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHC----CCEEEE-CCCC-CCCCCC
T ss_conf ---8857505678787655799877664057767624063347517999999999849----978997-7603-554467
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCCCCEEEEECCCC-CCCCCCCHHHHCCC-CCCCC-CCCCCCCCC
Q ss_conf 1235652034465334443233655-----4444433431068730543-32234320110145-74201-221224774
Q gi|254781091|r 163 IKEIAQIVKEYQGILVVDAVQAAGR-----IPLSIEEIKADFLIISSHK-LGAPVGAGALVFRE-DILLP-SPLLRGGDQ 234 (383)
Q Consensus 163 i~~I~~~~~~~g~~~~vD~aqa~g~-----~~id~~~~~~D~~~~S~hK-~~GP~G~G~L~~r~-~~~~~-~p~~~Gg~~ 234 (383)
T Consensus 183 ~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~--AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVFPg~- 258 (413)
T COG0112 183 FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH--ADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVFPGL- 258 (413)
T ss_pred HHHHHHHHHHHCCEEEEHHHHHHHHHHCCCCCCCCCC--CCEEECCCCCCCCCCCC-EEEEECCHHHHHHHHHHCCCCC-
T ss_conf 8999999987193677217788888745667999875--52675775347789984-1798362999987640007766-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE--CCCCHH
Q ss_conf 21222222211222100122110010-024565321012333344444321000122322110365228985--799999
Q gi|254781091|r 235 EKGQRAGTENYAVIGGFAVAAQQMVK-DIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSI--PFLKAE 311 (383)
Q Consensus 235 e~~~~~GT~~~~~i~~~~~al~~~~~-~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~--~~~~~~ 311 (383)
T Consensus 259 -----qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~--G~~vvsGgTdn--Hl~lVDl~~~~~~Gk 329 (413)
T COG0112 259 -----QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER--GFKVVSGGTDN--HLVLVDLRSKGLTGK 329 (413)
T ss_pred -----CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC--CCEEECCCCCC--EEEEEECCCCCCCHH
T ss_conf -----788278889999999999728138999999999999999999976--98671588644--489997246798778
Q ss_pred HHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCC----HHHHHHHHHHHHHHHHH
Q ss_conf 999998758969987113388643310146762888747659999078889----99999999999999986
Q gi|254781091|r 312 VLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTT----QEDIDIFLNALQKIIRT 379 (383)
Q Consensus 312 ~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT----~~dId~l~~~L~~iv~~ 379 (383)
T Consensus 330 ~ae~~L~~~~It~N-------KN~iP~D~---~~-p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 330 KAEAALERAGITVN-------KNAIPFDP---ES-PFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred HHHHHHHHCCEEEC-------CCCCCCCC---CC-CCCCCCCEECCHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999997097652-------68899999---88-8787663406688863579889999999999999955